Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS03310

Experiment: Experiment:TE2, Cucumber 9 Petiole 1 (TE2-S-C9-P1)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntLU632_RS03305 and LU632_RS03310 overlap by 1 nucleotidesLU632_RS03310 and LU632_RS03315 are separated by 172 nucleotidesLU632_RS03315 and LU632_RS03320 are separated by 181 nucleotides LU632_RS03305: LU632_RS03305 - sucrose-specific PTS transporter subunit IIBC, at 677,591 to 678,961 _RS03305 LU632_RS03310: LU632_RS03310 - sucrose-6-phosphate hydrolase, at 678,961 to 680,370 _RS03310 LU632_RS03315: LU632_RS03315 - MbeD family mobilization/exclusion protein, at 680,543 to 680,757 _RS03315 LU632_RS03320: LU632_RS03320 - hypothetical protein, at 680,939 to 681,630 _RS03320 Position (kb) 678 679 680 681Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 678.026 kb on + strand, within LU632_RS03305at 678.026 kb on + strand, within LU632_RS03305at 678.027 kb on - strand, within LU632_RS03305at 678.029 kb on - strand, within LU632_RS03305at 678.359 kb on - strand, within LU632_RS03305at 678.418 kb on + strand, within LU632_RS03305at 678.418 kb on + strand, within LU632_RS03305at 678.419 kb on - strand, within LU632_RS03305at 678.489 kb on - strand, within LU632_RS03305at 678.514 kb on - strand, within LU632_RS03305at 678.533 kb on - strand, within LU632_RS03305at 678.729 kb on + strand, within LU632_RS03305at 678.730 kb on - strand, within LU632_RS03305at 678.812 kb on + strand, within LU632_RS03305at 678.813 kb on - strand, within LU632_RS03305at 678.877 kb on + strandat 678.877 kb on + strandat 678.878 kb on - strandat 678.881 kb on + strandat 678.881 kb on + strandat 678.881 kb on + strandat 678.882 kb on - strandat 678.882 kb on - strandat 678.882 kb on - strandat 678.882 kb on - strandat 678.929 kb on + strandat 678.929 kb on + strandat 678.937 kb on + strandat 678.938 kb on - strandat 678.938 kb on - strandat 679.303 kb on + strand, within LU632_RS03310at 679.303 kb on + strand, within LU632_RS03310at 679.304 kb on - strand, within LU632_RS03310at 679.304 kb on - strand, within LU632_RS03310at 679.355 kb on + strand, within LU632_RS03310at 679.383 kb on + strand, within LU632_RS03310at 679.433 kb on + strand, within LU632_RS03310at 679.433 kb on + strand, within LU632_RS03310at 679.433 kb on + strand, within LU632_RS03310at 679.433 kb on + strand, within LU632_RS03310at 679.434 kb on - strand, within LU632_RS03310at 679.434 kb on - strand, within LU632_RS03310at 679.434 kb on - strand, within LU632_RS03310at 679.474 kb on - strand, within LU632_RS03310at 679.479 kb on - strand, within LU632_RS03310at 679.603 kb on + strand, within LU632_RS03310at 679.648 kb on + strand, within LU632_RS03310at 679.746 kb on + strand, within LU632_RS03310at 679.746 kb on + strand, within LU632_RS03310at 679.746 kb on + strand, within LU632_RS03310at 679.747 kb on - strand, within LU632_RS03310at 679.747 kb on - strand, within LU632_RS03310at 679.749 kb on + strand, within LU632_RS03310at 679.749 kb on + strand, within LU632_RS03310at 679.749 kb on + strand, within LU632_RS03310at 679.750 kb on - strand, within LU632_RS03310at 679.750 kb on - strand, within LU632_RS03310at 679.750 kb on - strand, within LU632_RS03310at 679.750 kb on - strand, within LU632_RS03310at 679.753 kb on + strand, within LU632_RS03310at 679.755 kb on + strand, within LU632_RS03310at 679.799 kb on - strand, within LU632_RS03310at 679.957 kb on + strand, within LU632_RS03310at 679.958 kb on - strand, within LU632_RS03310at 680.010 kb on + strand, within LU632_RS03310at 680.061 kb on - strand, within LU632_RS03310at 680.086 kb on - strand, within LU632_RS03310at 680.091 kb on + strand, within LU632_RS03310at 680.092 kb on - strand, within LU632_RS03310at 680.348 kb on + strandat 680.349 kb on - strandat 680.368 kb on + strandat 680.411 kb on + strandat 680.411 kb on + strandat 680.537 kb on + strandat 680.538 kb on - strandat 680.565 kb on + strand, within LU632_RS03315at 680.565 kb on + strand, within LU632_RS03315at 680.566 kb on - strand, within LU632_RS03315at 680.566 kb on - strand, within LU632_RS03315at 680.592 kb on - strand, within LU632_RS03315at 680.597 kb on + strand, within LU632_RS03315at 680.598 kb on - strand, within LU632_RS03315at 680.598 kb on - strand, within LU632_RS03315at 680.601 kb on + strand, within LU632_RS03315at 680.602 kb on - strand, within LU632_RS03315at 680.602 kb on - strand, within LU632_RS03315at 680.668 kb on + strand, within LU632_RS03315at 680.845 kb on - strandat 680.845 kb on - strandat 680.845 kb on - strandat 680.845 kb on - strandat 680.944 kb on + strandat 681.012 kb on + strand, within LU632_RS03320at 681.108 kb on - strand, within LU632_RS03320at 681.108 kb on - strand, within LU632_RS03320at 681.119 kb on + strand, within LU632_RS03320at 681.283 kb on + strand, within LU632_RS03320at 681.283 kb on + strand, within LU632_RS03320at 681.333 kb on - strand, within LU632_RS03320at 681.333 kb on - strand, within LU632_RS03320

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Experiment:TE2, Cucumber 9 Petiole 1 (TE2-S-C9-P1)
remove
678,026 + LU632_RS03305 0.32 -1.8
678,026 + LU632_RS03305 0.32 -0.2
678,027 - LU632_RS03305 0.32 -0.5
678,029 - LU632_RS03305 0.32 -0.7
678,359 - LU632_RS03305 0.56 -0.8
678,418 + LU632_RS03305 0.60 -0.5
678,418 + LU632_RS03305 0.60 +0.1
678,419 - LU632_RS03305 0.60 -1.9
678,489 - LU632_RS03305 0.65 +0.7
678,514 - LU632_RS03305 0.67 -1.9
678,533 - LU632_RS03305 0.69 -0.4
678,729 + LU632_RS03305 0.83 +0.1
678,730 - LU632_RS03305 0.83 -0.1
678,812 + LU632_RS03305 0.89 -2.4
678,813 - LU632_RS03305 0.89 -3.0
678,877 + -0.4
678,877 + -1.5
678,878 - -2.1
678,881 + -0.3
678,881 + +1.3
678,881 + -2.3
678,882 - -0.8
678,882 - -2.8
678,882 - -0.1
678,882 - -1.8
678,929 + +1.0
678,929 + -0.6
678,937 + -0.6
678,938 - -1.3
678,938 - -0.5
679,303 + LU632_RS03310 0.24 -2.7
679,303 + LU632_RS03310 0.24 -0.9
679,304 - LU632_RS03310 0.24 -0.7
679,304 - LU632_RS03310 0.24 -0.3
679,355 + LU632_RS03310 0.28 -2.8
679,383 + LU632_RS03310 0.30 -1.8
679,433 + LU632_RS03310 0.33 -1.4
679,433 + LU632_RS03310 0.33 -3.2
679,433 + LU632_RS03310 0.33 -0.2
679,433 + LU632_RS03310 0.33 -2.5
679,434 - LU632_RS03310 0.34 -0.2
679,434 - LU632_RS03310 0.34 -1.3
679,434 - LU632_RS03310 0.34 +1.7
679,474 - LU632_RS03310 0.36 -4.2
679,479 - LU632_RS03310 0.37 -1.3
679,603 + LU632_RS03310 0.46 -1.3
679,648 + LU632_RS03310 0.49 -0.9
679,746 + LU632_RS03310 0.56 -1.9
679,746 + LU632_RS03310 0.56 -2.9
679,746 + LU632_RS03310 0.56 -3.0
679,747 - LU632_RS03310 0.56 -0.9
679,747 - LU632_RS03310 0.56 -1.3
679,749 + LU632_RS03310 0.56 -1.5
679,749 + LU632_RS03310 0.56 -1.7
679,749 + LU632_RS03310 0.56 -2.0
679,750 - LU632_RS03310 0.56 -1.4
679,750 - LU632_RS03310 0.56 -0.6
679,750 - LU632_RS03310 0.56 -2.1
679,750 - LU632_RS03310 0.56 -0.9
679,753 + LU632_RS03310 0.56 -0.0
679,755 + LU632_RS03310 0.56 -2.0
679,799 - LU632_RS03310 0.59 -0.5
679,957 + LU632_RS03310 0.71 -3.9
679,958 - LU632_RS03310 0.71 -3.4
680,010 + LU632_RS03310 0.74 -2.1
680,061 - LU632_RS03310 0.78 -1.8
680,086 - LU632_RS03310 0.80 -3.0
680,091 + LU632_RS03310 0.80 -1.9
680,092 - LU632_RS03310 0.80 +0.7
680,348 + +0.2
680,349 - +1.7
680,368 + -0.6
680,411 + -0.6
680,411 + -0.6
680,537 + -0.6
680,538 - -1.3
680,565 + LU632_RS03315 0.10 -2.0
680,565 + LU632_RS03315 0.10 +3.3
680,566 - LU632_RS03315 0.11 -1.1
680,566 - LU632_RS03315 0.11 +4.1
680,592 - LU632_RS03315 0.23 +1.3
680,597 + LU632_RS03315 0.25 -0.8
680,598 - LU632_RS03315 0.26 -0.6
680,598 - LU632_RS03315 0.26 -4.2
680,601 + LU632_RS03315 0.27 +0.1
680,602 - LU632_RS03315 0.27 -1.7
680,602 - LU632_RS03315 0.27 -1.9
680,668 + LU632_RS03315 0.58 -1.3
680,845 - -1.7
680,845 - +0.8
680,845 - +2.3
680,845 - -1.8
680,944 + -1.8
681,012 + LU632_RS03320 0.11 +1.7
681,108 - LU632_RS03320 0.24 +2.3
681,108 - LU632_RS03320 0.24 +1.0
681,119 + LU632_RS03320 0.26 -0.3
681,283 + LU632_RS03320 0.50 -0.0
681,283 + LU632_RS03320 0.50 -1.7
681,333 - LU632_RS03320 0.57 -2.5
681,333 - LU632_RS03320 0.57 +2.5

Or see this region's nucleotide sequence