Experiment: Experiment:TE2, Cucumber 9 Petiole 1 (TE2-S-C9-P1)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt leuC and leuB are separated by 2 nucleotides leuB and leuA are separated by 2 nucleotides
LU632_RS02870: leuC - 3-isopropylmalate dehydratase large subunit, at 583,140 to 584,549
leuC
LU632_RS02875: leuB - 3-isopropylmalate dehydrogenase, at 584,552 to 585,640
leuB
LU632_RS02880: leuA - 2-isopropylmalate synthase, at 585,643 to 587,211
leuA
Position (kb) 584
585
586 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 583.577 kb on + strand, within leuC at 583.577 kb on + strand, within leuC at 583.578 kb on - strand, within leuC at 583.579 kb on + strand, within leuC at 583.612 kb on - strand, within leuC at 583.643 kb on + strand, within leuC at 583.643 kb on + strand, within leuC at 583.644 kb on - strand, within leuC at 583.689 kb on + strand, within leuC at 583.892 kb on + strand, within leuC at 583.892 kb on + strand, within leuC at 583.892 kb on + strand, within leuC at 583.892 kb on + strand, within leuC at 583.892 kb on + strand, within leuC at 583.893 kb on - strand, within leuC at 583.893 kb on - strand, within leuC at 583.893 kb on - strand, within leuC at 583.896 kb on + strand, within leuC at 583.897 kb on - strand, within leuC at 583.953 kb on + strand, within leuC at 583.953 kb on + strand, within leuC at 583.953 kb on + strand, within leuC at 583.954 kb on - strand, within leuC at 583.954 kb on - strand, within leuC at 583.954 kb on - strand, within leuC at 584.007 kb on - strand, within leuC at 584.042 kb on + strand, within leuC at 584.118 kb on - strand, within leuC at 584.162 kb on + strand, within leuC at 584.163 kb on - strand, within leuC at 584.242 kb on + strand, within leuC at 584.253 kb on - strand, within leuC at 584.283 kb on - strand, within leuC at 584.476 kb on + strand at 584.506 kb on + strand at 584.507 kb on - strand at 584.522 kb on + strand at 584.536 kb on + strand at 584.538 kb on + strand at 584.549 kb on + strand at 584.707 kb on + strand, within leuB at 584.720 kb on + strand, within leuB at 584.721 kb on - strand, within leuB at 584.965 kb on + strand, within leuB at 584.967 kb on + strand, within leuB at 584.967 kb on + strand, within leuB at 584.967 kb on + strand, within leuB at 584.967 kb on + strand, within leuB at 584.967 kb on + strand, within leuB at 584.967 kb on + strand, within leuB at 584.967 kb on + strand, within leuB at 584.967 kb on + strand, within leuB at 584.967 kb on + strand, within leuB at 584.967 kb on + strand, within leuB at 584.967 kb on + strand, within leuB at 584.967 kb on + strand, within leuB at 584.967 kb on + strand, within leuB at 584.967 kb on + strand, within leuB at 584.968 kb on - strand, within leuB at 584.968 kb on - strand, within leuB at 584.968 kb on - strand, within leuB at 584.968 kb on - strand, within leuB at 584.968 kb on - strand, within leuB at 584.968 kb on - strand, within leuB at 584.968 kb on - strand, within leuB at 584.968 kb on - strand, within leuB at 584.968 kb on - strand, within leuB at 584.968 kb on - strand, within leuB at 584.968 kb on - strand, within leuB at 584.968 kb on - strand, within leuB at 584.968 kb on - strand, within leuB at 584.968 kb on - strand, within leuB at 585.119 kb on - strand, within leuB at 585.207 kb on + strand, within leuB at 585.208 kb on - strand, within leuB at 585.208 kb on - strand, within leuB at 585.460 kb on + strand, within leuB at 585.622 kb on + strand at 585.622 kb on + strand at 585.623 kb on - strand at 585.623 kb on - strand at 585.623 kb on - strand at 585.627 kb on + strand at 585.627 kb on + strand at 585.627 kb on + strand at 585.628 kb on - strand at 585.649 kb on + strand at 585.650 kb on - strand at 585.761 kb on - strand at 585.761 kb on - strand at 585.763 kb on - strand at 585.803 kb on + strand, within leuA at 585.803 kb on + strand, within leuA at 585.804 kb on - strand, within leuA at 585.820 kb on + strand, within leuA at 585.867 kb on - strand, within leuA at 585.882 kb on + strand, within leuA at 586.001 kb on - strand, within leuA at 586.103 kb on - strand, within leuA at 586.142 kb on + strand, within leuA at 586.142 kb on + strand, within leuA at 586.160 kb on + strand, within leuA at 586.160 kb on + strand, within leuA at 586.173 kb on + strand, within leuA at 586.173 kb on + strand, within leuA at 586.173 kb on + strand, within leuA at 586.173 kb on + strand, within leuA at 586.175 kb on + strand, within leuA at 586.191 kb on + strand, within leuA at 586.301 kb on - strand, within leuA at 586.371 kb on + strand, within leuA at 586.462 kb on + strand, within leuA at 586.462 kb on + strand, within leuA at 586.463 kb on - strand, within leuA at 586.531 kb on - strand, within leuA at 586.592 kb on - strand, within leuA at 586.605 kb on + strand, within leuA
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE2, Cucumber 9 Petiole 1 (TE2-S-C9-P1) remove 583,577 + leuC LU632_RS02870 0.31 +1.0 583,577 + leuC LU632_RS02870 0.31 -1.0 583,578 - leuC LU632_RS02870 0.31 -1.0 583,579 + leuC LU632_RS02870 0.31 -1.7 583,612 - leuC LU632_RS02870 0.33 -2.0 583,643 + leuC LU632_RS02870 0.36 -2.4 583,643 + leuC LU632_RS02870 0.36 +0.1 583,644 - leuC LU632_RS02870 0.36 -1.4 583,689 + leuC LU632_RS02870 0.39 +0.4 583,892 + leuC LU632_RS02870 0.53 -1.5 583,892 + leuC LU632_RS02870 0.53 -1.3 583,892 + leuC LU632_RS02870 0.53 -0.8 583,892 + leuC LU632_RS02870 0.53 +0.2 583,892 + leuC LU632_RS02870 0.53 -2.5 583,893 - leuC LU632_RS02870 0.53 -1.0 583,893 - leuC LU632_RS02870 0.53 +0.3 583,893 - leuC LU632_RS02870 0.53 -0.8 583,896 + leuC LU632_RS02870 0.54 +1.0 583,897 - leuC LU632_RS02870 0.54 -2.8 583,953 + leuC LU632_RS02870 0.58 -2.8 583,953 + leuC LU632_RS02870 0.58 -0.2 583,953 + leuC LU632_RS02870 0.58 -2.2 583,954 - leuC LU632_RS02870 0.58 -2.0 583,954 - leuC LU632_RS02870 0.58 +0.1 583,954 - leuC LU632_RS02870 0.58 +1.8 584,007 - leuC LU632_RS02870 0.61 -1.5 584,042 + leuC LU632_RS02870 0.64 -1.5 584,118 - leuC LU632_RS02870 0.69 -0.7 584,162 + leuC LU632_RS02870 0.72 -0.8 584,163 - leuC LU632_RS02870 0.73 -1.8 584,242 + leuC LU632_RS02870 0.78 -0.8 584,253 - leuC LU632_RS02870 0.79 -0.9 584,283 - leuC LU632_RS02870 0.81 -1.0 584,476 + -2.0 584,506 + +1.1 584,507 - -1.7 584,522 + -0.2 584,536 + -2.8 584,538 + -1.2 584,549 + +0.8 584,707 + leuB LU632_RS02875 0.14 -3.2 584,720 + leuB LU632_RS02875 0.15 -1.5 584,721 - leuB LU632_RS02875 0.16 -3.1 584,965 + leuB LU632_RS02875 0.38 -1.7 584,967 + leuB LU632_RS02875 0.38 -1.0 584,967 + leuB LU632_RS02875 0.38 -0.2 584,967 + leuB LU632_RS02875 0.38 -0.2 584,967 + leuB LU632_RS02875 0.38 -1.3 584,967 + leuB LU632_RS02875 0.38 -2.5 584,967 + leuB LU632_RS02875 0.38 -4.1 584,967 + leuB LU632_RS02875 0.38 -0.2 584,967 + leuB LU632_RS02875 0.38 +0.8 584,967 + leuB LU632_RS02875 0.38 -0.9 584,967 + leuB LU632_RS02875 0.38 -2.9 584,967 + leuB LU632_RS02875 0.38 +0.1 584,967 + leuB LU632_RS02875 0.38 -0.5 584,967 + leuB LU632_RS02875 0.38 -0.4 584,967 + leuB LU632_RS02875 0.38 -1.5 584,968 - leuB LU632_RS02875 0.38 -0.8 584,968 - leuB LU632_RS02875 0.38 -1.2 584,968 - leuB LU632_RS02875 0.38 -2.7 584,968 - leuB LU632_RS02875 0.38 +1.3 584,968 - leuB LU632_RS02875 0.38 -2.4 584,968 - leuB LU632_RS02875 0.38 -1.5 584,968 - leuB LU632_RS02875 0.38 -0.4 584,968 - leuB LU632_RS02875 0.38 +0.8 584,968 - leuB LU632_RS02875 0.38 -1.7 584,968 - leuB LU632_RS02875 0.38 -0.3 584,968 - leuB LU632_RS02875 0.38 -2.2 584,968 - leuB LU632_RS02875 0.38 +0.8 584,968 - leuB LU632_RS02875 0.38 -1.4 584,968 - leuB LU632_RS02875 0.38 -0.8 585,119 - leuB LU632_RS02875 0.52 -1.8 585,207 + leuB LU632_RS02875 0.60 -1.7 585,208 - leuB LU632_RS02875 0.60 -1.2 585,208 - leuB LU632_RS02875 0.60 +1.1 585,460 + leuB LU632_RS02875 0.83 -1.5 585,622 + -1.0 585,622 + -1.2 585,623 - +0.1 585,623 - -1.4 585,623 - -0.5 585,627 + -1.0 585,627 + -0.8 585,627 + -3.0 585,628 - -0.1 585,649 + -1.2 585,650 - -2.9 585,761 - -1.0 585,761 - -2.4 585,763 - -1.6 585,803 + leuA LU632_RS02880 0.10 -1.8 585,803 + leuA LU632_RS02880 0.10 -1.1 585,804 - leuA LU632_RS02880 0.10 -1.2 585,820 + leuA LU632_RS02880 0.11 -0.8 585,867 - leuA LU632_RS02880 0.14 -2.2 585,882 + leuA LU632_RS02880 0.15 -1.7 586,001 - leuA LU632_RS02880 0.23 -0.8 586,103 - leuA LU632_RS02880 0.29 -1.0 586,142 + leuA LU632_RS02880 0.32 -0.1 586,142 + leuA LU632_RS02880 0.32 -1.2 586,160 + leuA LU632_RS02880 0.33 +1.0 586,160 + leuA LU632_RS02880 0.33 -0.4 586,173 + leuA LU632_RS02880 0.34 -0.2 586,173 + leuA LU632_RS02880 0.34 -0.4 586,173 + leuA LU632_RS02880 0.34 +0.2 586,173 + leuA LU632_RS02880 0.34 -1.0 586,175 + leuA LU632_RS02880 0.34 -1.3 586,191 + leuA LU632_RS02880 0.35 -0.2 586,301 - leuA LU632_RS02880 0.42 -2.1 586,371 + leuA LU632_RS02880 0.46 -0.7 586,462 + leuA LU632_RS02880 0.52 -2.5 586,462 + leuA LU632_RS02880 0.52 -0.2 586,463 - leuA LU632_RS02880 0.52 -1.3 586,531 - leuA LU632_RS02880 0.57 -1.2 586,592 - leuA LU632_RS02880 0.60 -1.6 586,605 + leuA LU632_RS02880 0.61 -0.2
Or see this region's nucleotide sequence