Experiment: Experiment:TE2, Cucumber 9 Petiole 1 (TE2-S-C9-P1)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS02855 and LU632_RS02860 are separated by 319 nucleotides LU632_RS02860 and leuD are separated by 44 nucleotides leuD and leuC are separated by 9 nucleotides
LU632_RS02855: LU632_RS02855 - hypothetical protein, at 581,631 to 581,990
_RS02855
LU632_RS02860: LU632_RS02860 - hypothetical protein, at 582,310 to 582,480
_RS02860
LU632_RS02865: leuD - 3-isopropylmalate dehydratase small subunit, at 582,525 to 583,130
leuD
LU632_RS02870: leuC - 3-isopropylmalate dehydratase large subunit, at 583,140 to 584,549
leuC
Position (kb) 582
583
584 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 581.530 kb on - strand at 581.530 kb on - strand at 581.583 kb on + strand at 581.583 kb on + strand at 581.584 kb on - strand at 581.584 kb on - strand at 581.584 kb on - strand at 581.584 kb on - strand at 581.822 kb on + strand, within LU632_RS02855 at 581.822 kb on + strand, within LU632_RS02855 at 581.822 kb on + strand, within LU632_RS02855 at 581.822 kb on + strand, within LU632_RS02855 at 581.906 kb on + strand, within LU632_RS02855 at 581.907 kb on - strand, within LU632_RS02855 at 581.912 kb on + strand, within LU632_RS02855 at 581.913 kb on - strand, within LU632_RS02855 at 581.913 kb on - strand, within LU632_RS02855 at 582.018 kb on + strand at 582.018 kb on + strand at 582.018 kb on + strand at 582.018 kb on + strand at 582.019 kb on - strand at 582.024 kb on + strand at 582.024 kb on + strand at 582.025 kb on - strand at 582.197 kb on + strand at 582.224 kb on + strand at 582.261 kb on + strand at 582.261 kb on + strand at 582.261 kb on + strand at 582.261 kb on + strand at 582.262 kb on - strand at 582.262 kb on - strand at 582.262 kb on - strand at 582.262 kb on - strand at 582.314 kb on + strand at 582.397 kb on + strand, within LU632_RS02860 at 582.397 kb on + strand, within LU632_RS02860 at 582.397 kb on + strand, within LU632_RS02860 at 582.397 kb on + strand, within LU632_RS02860 at 582.408 kb on - strand, within LU632_RS02860 at 582.427 kb on - strand, within LU632_RS02860 at 582.479 kb on - strand at 582.520 kb on + strand at 582.596 kb on + strand, within leuD at 582.596 kb on + strand, within leuD at 582.675 kb on - strand, within leuD at 582.675 kb on - strand, within leuD at 582.759 kb on + strand, within leuD at 582.760 kb on - strand, within leuD at 582.795 kb on - strand, within leuD at 582.912 kb on - strand, within leuD at 582.941 kb on + strand, within leuD at 582.941 kb on + strand, within leuD at 582.942 kb on - strand, within leuD at 582.997 kb on + strand, within leuD at 582.998 kb on - strand, within leuD at 583.056 kb on - strand, within leuD at 583.141 kb on + strand at 583.141 kb on + strand at 583.310 kb on + strand, within leuC at 583.466 kb on + strand, within leuC at 583.499 kb on + strand, within leuC at 583.500 kb on - strand, within leuC at 583.511 kb on + strand, within leuC at 583.524 kb on - strand, within leuC at 583.577 kb on + strand, within leuC at 583.577 kb on + strand, within leuC at 583.578 kb on - strand, within leuC at 583.579 kb on + strand, within leuC at 583.612 kb on - strand, within leuC at 583.643 kb on + strand, within leuC at 583.643 kb on + strand, within leuC at 583.644 kb on - strand, within leuC at 583.689 kb on + strand, within leuC at 583.892 kb on + strand, within leuC at 583.892 kb on + strand, within leuC at 583.892 kb on + strand, within leuC at 583.892 kb on + strand, within leuC at 583.892 kb on + strand, within leuC at 583.893 kb on - strand, within leuC at 583.893 kb on - strand, within leuC at 583.893 kb on - strand, within leuC at 583.896 kb on + strand, within leuC at 583.897 kb on - strand, within leuC at 583.953 kb on + strand, within leuC at 583.953 kb on + strand, within leuC at 583.953 kb on + strand, within leuC at 583.954 kb on - strand, within leuC at 583.954 kb on - strand, within leuC at 583.954 kb on - strand, within leuC at 584.007 kb on - strand, within leuC at 584.042 kb on + strand, within leuC at 584.118 kb on - strand, within leuC
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE2, Cucumber 9 Petiole 1 (TE2-S-C9-P1) remove 581,530 - -0.3 581,530 - +2.1 581,583 + +0.9 581,583 + +0.5 581,584 - -1.2 581,584 - -0.3 581,584 - -0.9 581,584 - +0.2 581,822 + LU632_RS02855 0.53 -0.8 581,822 + LU632_RS02855 0.53 +1.1 581,822 + LU632_RS02855 0.53 -0.8 581,822 + LU632_RS02855 0.53 +0.4 581,906 + LU632_RS02855 0.76 +0.8 581,907 - LU632_RS02855 0.77 -0.3 581,912 + LU632_RS02855 0.78 +2.1 581,913 - LU632_RS02855 0.78 +0.2 581,913 - LU632_RS02855 0.78 -0.0 582,018 + +0.1 582,018 + +0.8 582,018 + -0.5 582,018 + -0.0 582,019 - -0.1 582,024 + -0.9 582,024 + -0.9 582,025 - -0.1 582,197 + +0.8 582,224 + +0.8 582,261 + +0.3 582,261 + -0.9 582,261 + -0.5 582,261 + -2.7 582,262 - +3.7 582,262 - +0.4 582,262 - -0.0 582,262 - -2.0 582,314 + -1.0 582,397 + LU632_RS02860 0.51 -0.2 582,397 + LU632_RS02860 0.51 +1.8 582,397 + LU632_RS02860 0.51 -0.2 582,397 + LU632_RS02860 0.51 +0.2 582,408 - LU632_RS02860 0.57 +1.5 582,427 - LU632_RS02860 0.68 +1.4 582,479 - +1.1 582,520 + -0.5 582,596 + leuD LU632_RS02865 0.12 -1.7 582,596 + leuD LU632_RS02865 0.12 -3.1 582,675 - leuD LU632_RS02865 0.25 -1.2 582,675 - leuD LU632_RS02865 0.25 -1.8 582,759 + leuD LU632_RS02865 0.39 -1.4 582,760 - leuD LU632_RS02865 0.39 -3.5 582,795 - leuD LU632_RS02865 0.45 +0.9 582,912 - leuD LU632_RS02865 0.64 -2.8 582,941 + leuD LU632_RS02865 0.69 -2.2 582,941 + leuD LU632_RS02865 0.69 -3.2 582,942 - leuD LU632_RS02865 0.69 -3.0 582,997 + leuD LU632_RS02865 0.78 -2.1 582,998 - leuD LU632_RS02865 0.78 -0.8 583,056 - leuD LU632_RS02865 0.88 -0.6 583,141 + -1.2 583,141 + -2.8 583,310 + leuC LU632_RS02870 0.12 -0.5 583,466 + leuC LU632_RS02870 0.23 -1.5 583,499 + leuC LU632_RS02870 0.25 +0.8 583,500 - leuC LU632_RS02870 0.26 -3.7 583,511 + leuC LU632_RS02870 0.26 -2.0 583,524 - leuC LU632_RS02870 0.27 +0.1 583,577 + leuC LU632_RS02870 0.31 +1.0 583,577 + leuC LU632_RS02870 0.31 -1.0 583,578 - leuC LU632_RS02870 0.31 -1.0 583,579 + leuC LU632_RS02870 0.31 -1.7 583,612 - leuC LU632_RS02870 0.33 -2.0 583,643 + leuC LU632_RS02870 0.36 -2.4 583,643 + leuC LU632_RS02870 0.36 +0.1 583,644 - leuC LU632_RS02870 0.36 -1.4 583,689 + leuC LU632_RS02870 0.39 +0.4 583,892 + leuC LU632_RS02870 0.53 -1.5 583,892 + leuC LU632_RS02870 0.53 -1.3 583,892 + leuC LU632_RS02870 0.53 -0.8 583,892 + leuC LU632_RS02870 0.53 +0.2 583,892 + leuC LU632_RS02870 0.53 -2.5 583,893 - leuC LU632_RS02870 0.53 -1.0 583,893 - leuC LU632_RS02870 0.53 +0.3 583,893 - leuC LU632_RS02870 0.53 -0.8 583,896 + leuC LU632_RS02870 0.54 +1.0 583,897 - leuC LU632_RS02870 0.54 -2.8 583,953 + leuC LU632_RS02870 0.58 -2.8 583,953 + leuC LU632_RS02870 0.58 -0.2 583,953 + leuC LU632_RS02870 0.58 -2.2 583,954 - leuC LU632_RS02870 0.58 -2.0 583,954 - leuC LU632_RS02870 0.58 +0.1 583,954 - leuC LU632_RS02870 0.58 +1.8 584,007 - leuC LU632_RS02870 0.61 -1.5 584,042 + leuC LU632_RS02870 0.64 -1.5 584,118 - leuC LU632_RS02870 0.69 -0.7
Or see this region's nucleotide sequence