Experiment: Experiment:TE2, Cucumber 9 Petiole 1 (TE2-S-C9-P1)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt dapB and folC are separated by 661 nucleotides folC and LU632_RS02770 are separated by 791 nucleotides
LU632_RS02760: dapB - 4-hydroxy-tetrahydrodipicolinate reductase, at 558,299 to 559,120
dapB
LU632_RS02765: folC - bifunctional tetrahydrofolate synthase/dihydrofolate synthase, at 559,782 to 561,026
folC
LU632_RS02770: LU632_RS02770 - IS5 family transposase, at 561,818 to 562,643
_RS02770
Position (kb) 559
560
561
562 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5
6 at 559.133 kb on - strand at 559.187 kb on + strand at 559.212 kb on - strand at 559.212 kb on - strand at 559.247 kb on + strand at 559.247 kb on + strand at 559.275 kb on + strand at 559.356 kb on - strand at 559.356 kb on - strand at 559.405 kb on + strand at 559.405 kb on + strand at 559.406 kb on - strand at 559.453 kb on + strand at 559.454 kb on - strand at 559.547 kb on + strand at 559.547 kb on + strand at 559.547 kb on + strand at 559.548 kb on - strand at 559.601 kb on + strand at 559.616 kb on + strand at 559.655 kb on + strand at 559.691 kb on + strand at 559.722 kb on + strand at 559.774 kb on + strand at 559.800 kb on - strand at 559.810 kb on - strand at 559.896 kb on + strand at 559.914 kb on - strand, within folC at 559.926 kb on + strand, within folC at 559.930 kb on + strand, within folC at 559.931 kb on - strand, within folC at 559.995 kb on - strand, within folC at 560.040 kb on - strand, within folC at 560.079 kb on + strand, within folC at 560.111 kb on - strand, within folC at 560.159 kb on + strand, within folC at 560.159 kb on + strand, within folC at 560.163 kb on + strand, within folC at 560.163 kb on + strand, within folC at 560.271 kb on + strand, within folC at 560.271 kb on + strand, within folC at 560.272 kb on - strand, within folC at 560.272 kb on - strand, within folC at 560.301 kb on + strand, within folC at 560.397 kb on + strand, within folC at 560.410 kb on + strand, within folC at 560.411 kb on - strand, within folC at 560.484 kb on - strand, within folC at 560.484 kb on - strand, within folC at 560.571 kb on - strand, within folC at 560.574 kb on - strand, within folC at 560.574 kb on - strand, within folC at 560.574 kb on - strand, within folC at 560.616 kb on - strand, within folC at 560.616 kb on - strand, within folC at 560.687 kb on + strand, within folC at 560.780 kb on - strand, within folC at 560.780 kb on - strand, within folC at 560.783 kb on + strand, within folC at 560.784 kb on - strand, within folC at 560.850 kb on - strand, within folC at 560.910 kb on + strand at 560.914 kb on - strand at 560.914 kb on - strand at 560.916 kb on - strand at 560.987 kb on + strand at 560.988 kb on - strand at 560.988 kb on - strand at 560.988 kb on - strand at 560.989 kb on + strand at 561.082 kb on + strand at 561.082 kb on + strand at 561.102 kb on - strand at 561.200 kb on - strand at 561.200 kb on - strand at 561.201 kb on + strand at 561.201 kb on + strand at 561.201 kb on + strand at 561.201 kb on + strand at 561.202 kb on - strand at 561.229 kb on + strand at 561.355 kb on + strand at 561.356 kb on - strand at 561.361 kb on + strand at 561.361 kb on + strand at 561.361 kb on + strand at 561.361 kb on + strand at 561.362 kb on - strand at 561.362 kb on - strand at 561.362 kb on - strand at 561.552 kb on + strand at 561.569 kb on + strand at 561.691 kb on + strand at 561.692 kb on - strand at 561.692 kb on - strand at 561.785 kb on - strand at 561.785 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE2, Cucumber 9 Petiole 1 (TE2-S-C9-P1) remove 559,133 - -0.3 559,187 + -1.2 559,212 - +2.1 559,212 - +1.8 559,247 + -0.2 559,247 + -2.9 559,275 + +0.8 559,356 - +1.4 559,356 - +0.5 559,405 + +0.8 559,405 + +1.8 559,406 - +0.5 559,453 + -0.3 559,454 - -0.3 559,547 + +1.6 559,547 + -1.9 559,547 + +2.6 559,548 - +0.6 559,601 + -0.1 559,616 + +1.7 559,655 + -0.5 559,691 + -0.4 559,722 + -0.2 559,774 + -0.8 559,800 - +0.3 559,810 - -0.4 559,896 + -0.1 559,914 - folC LU632_RS02765 0.11 +1.5 559,926 + folC LU632_RS02765 0.12 -0.8 559,930 + folC LU632_RS02765 0.12 -0.7 559,931 - folC LU632_RS02765 0.12 -1.9 559,995 - folC LU632_RS02765 0.17 +0.4 560,040 - folC LU632_RS02765 0.21 +1.1 560,079 + folC LU632_RS02765 0.24 -0.6 560,111 - folC LU632_RS02765 0.26 -2.1 560,159 + folC LU632_RS02765 0.30 -1.2 560,159 + folC LU632_RS02765 0.30 -1.5 560,163 + folC LU632_RS02765 0.31 +0.8 560,163 + folC LU632_RS02765 0.31 +0.0 560,271 + folC LU632_RS02765 0.39 -1.0 560,271 + folC LU632_RS02765 0.39 -0.7 560,272 - folC LU632_RS02765 0.39 +4.8 560,272 - folC LU632_RS02765 0.39 -1.1 560,301 + folC LU632_RS02765 0.42 -1.8 560,397 + folC LU632_RS02765 0.49 -0.6 560,410 + folC LU632_RS02765 0.50 -1.8 560,411 - folC LU632_RS02765 0.51 +0.4 560,484 - folC LU632_RS02765 0.56 +0.8 560,484 - folC LU632_RS02765 0.56 +5.8 560,571 - folC LU632_RS02765 0.63 +1.0 560,574 - folC LU632_RS02765 0.64 -0.3 560,574 - folC LU632_RS02765 0.64 +5.2 560,574 - folC LU632_RS02765 0.64 +1.0 560,616 - folC LU632_RS02765 0.67 +3.1 560,616 - folC LU632_RS02765 0.67 +2.6 560,687 + folC LU632_RS02765 0.73 +0.4 560,780 - folC LU632_RS02765 0.80 +0.8 560,780 - folC LU632_RS02765 0.80 -1.3 560,783 + folC LU632_RS02765 0.80 +1.7 560,784 - folC LU632_RS02765 0.80 +1.4 560,850 - folC LU632_RS02765 0.86 +2.5 560,910 + +1.7 560,914 - +0.2 560,914 - +3.6 560,916 - +2.8 560,987 + -0.3 560,988 - +3.5 560,988 - -0.1 560,988 - +1.8 560,989 + -0.1 561,082 + -0.4 561,082 + -0.1 561,102 - -0.3 561,200 - -2.7 561,200 - +0.4 561,201 + +2.1 561,201 + -1.4 561,201 + +0.5 561,201 + +0.8 561,202 - -4.2 561,229 + +0.2 561,355 + +2.6 561,356 - +1.9 561,361 + -0.8 561,361 + +3.0 561,361 + -1.7 561,361 + -1.8 561,362 - -1.2 561,362 - +0.5 561,362 - +2.1 561,552 + -2.2 561,569 + -0.6 561,691 + -0.0 561,692 - -1.6 561,692 - +0.9 561,785 - +2.0 561,785 - +1.6
Or see this region's nucleotide sequence