Experiment: Experiment:TE2, Cucumber 9 Petiole 1 (TE2-S-C9-P1)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt carB and carA are separated by 14 nucleotides carA and dapB are separated by 445 nucleotides
LU632_RS02750: carB - carbamoyl-phosphate synthase large subunit, at 553,469 to 556,693
carB
LU632_RS02755: carA - glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit, at 556,708 to 557,853
carA
LU632_RS02760: dapB - 4-hydroxy-tetrahydrodipicolinate reductase, at 558,299 to 559,120
dapB
Position (kb) 556
557
558 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 555.913 kb on - strand, within carB at 555.950 kb on - strand, within carB at 556.146 kb on + strand, within carB at 556.147 kb on - strand, within carB at 556.147 kb on - strand, within carB at 556.355 kb on + strand, within carB at 556.355 kb on + strand, within carB at 556.355 kb on + strand, within carB at 556.356 kb on - strand, within carB at 556.468 kb on + strand at 556.499 kb on - strand at 556.500 kb on + strand at 556.500 kb on + strand at 556.501 kb on - strand at 556.501 kb on - strand at 556.501 kb on - strand at 556.501 kb on - strand at 556.501 kb on - strand at 556.501 kb on - strand at 556.501 kb on - strand at 556.553 kb on - strand at 556.591 kb on + strand at 556.611 kb on + strand at 556.673 kb on + strand at 556.674 kb on - strand at 556.681 kb on + strand at 556.709 kb on + strand at 556.840 kb on - strand, within carA at 556.840 kb on - strand, within carA at 556.869 kb on + strand, within carA at 556.869 kb on + strand, within carA at 556.870 kb on - strand, within carA at 556.947 kb on + strand, within carA at 556.947 kb on + strand, within carA at 556.950 kb on + strand, within carA at 557.108 kb on + strand, within carA at 557.108 kb on + strand, within carA at 557.108 kb on + strand, within carA at 557.236 kb on - strand, within carA at 557.247 kb on + strand, within carA at 557.248 kb on - strand, within carA at 557.273 kb on - strand, within carA at 557.458 kb on - strand, within carA at 557.518 kb on - strand, within carA at 557.518 kb on - strand, within carA at 557.526 kb on + strand, within carA at 557.526 kb on + strand, within carA at 557.527 kb on - strand, within carA at 557.552 kb on + strand, within carA at 557.611 kb on - strand, within carA at 557.685 kb on - strand, within carA at 557.711 kb on + strand, within carA at 557.786 kb on - strand at 557.884 kb on - strand at 557.884 kb on - strand at 557.922 kb on + strand at 557.982 kb on - strand at 557.982 kb on - strand at 558.068 kb on - strand at 558.097 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE2, Cucumber 9 Petiole 1 (TE2-S-C9-P1) remove 555,913 - carB LU632_RS02750 0.76 -0.8 555,950 - carB LU632_RS02750 0.77 -1.5 556,146 + carB LU632_RS02750 0.83 -1.2 556,147 - carB LU632_RS02750 0.83 -2.4 556,147 - carB LU632_RS02750 0.83 -0.1 556,355 + carB LU632_RS02750 0.89 -1.9 556,355 + carB LU632_RS02750 0.89 -1.8 556,355 + carB LU632_RS02750 0.89 -1.1 556,356 - carB LU632_RS02750 0.90 -1.8 556,468 + -1.4 556,499 - -1.2 556,500 + -1.7 556,500 + +3.1 556,501 - -3.2 556,501 - -1.3 556,501 - -0.7 556,501 - -2.1 556,501 - -3.5 556,501 - -1.0 556,501 - -0.8 556,553 - -0.9 556,591 + -2.4 556,611 + +0.2 556,673 + -1.2 556,674 - -3.3 556,681 + -0.1 556,709 + -0.8 556,840 - carA LU632_RS02755 0.12 -1.5 556,840 - carA LU632_RS02755 0.12 +1.3 556,869 + carA LU632_RS02755 0.14 -1.1 556,869 + carA LU632_RS02755 0.14 -2.5 556,870 - carA LU632_RS02755 0.14 -1.2 556,947 + carA LU632_RS02755 0.21 +0.2 556,947 + carA LU632_RS02755 0.21 -0.9 556,950 + carA LU632_RS02755 0.21 -3.8 557,108 + carA LU632_RS02755 0.35 -1.5 557,108 + carA LU632_RS02755 0.35 -3.5 557,108 + carA LU632_RS02755 0.35 -2.1 557,236 - carA LU632_RS02755 0.46 -0.8 557,247 + carA LU632_RS02755 0.47 -3.0 557,248 - carA LU632_RS02755 0.47 -1.8 557,273 - carA LU632_RS02755 0.49 -2.0 557,458 - carA LU632_RS02755 0.65 +1.8 557,518 - carA LU632_RS02755 0.71 -4.2 557,518 - carA LU632_RS02755 0.71 -1.3 557,526 + carA LU632_RS02755 0.71 -0.5 557,526 + carA LU632_RS02755 0.71 -0.2 557,527 - carA LU632_RS02755 0.71 -0.8 557,552 + carA LU632_RS02755 0.74 -1.5 557,611 - carA LU632_RS02755 0.79 -1.1 557,685 - carA LU632_RS02755 0.85 -2.3 557,711 + carA LU632_RS02755 0.88 -1.0 557,786 - -1.8 557,884 - -2.4 557,884 - +1.2 557,922 + -1.5 557,982 - -0.2 557,982 - -2.0 558,068 - +0.2 558,097 + +1.3
Or see this region's nucleotide sequence