Experiment: Experiment:TE2, Cucumber 9 Petiole 1 (TE2-S-C9-P1)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS02245 and LU632_RS02250 are separated by 459 nucleotides LU632_RS02250 and LU632_RS02255 are separated by 522 nucleotides
LU632_RS02245: LU632_RS02245 - hypothetical protein, at 443,499 to 443,918
_RS02245
LU632_RS02250: LU632_RS02250 - aldose 1-epimerase family protein, at 444,378 to 445,586
_RS02250
LU632_RS02255: LU632_RS02255 - UPF0149 family protein, at 446,109 to 446,684
_RS02255
Position (kb) 444
445
446 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 443.478 kb on - strand at 443.510 kb on + strand at 443.516 kb on + strand at 443.517 kb on - strand at 443.520 kb on - strand at 443.523 kb on + strand at 443.524 kb on - strand at 443.560 kb on + strand, within LU632_RS02245 at 443.567 kb on + strand, within LU632_RS02245 at 443.569 kb on + strand, within LU632_RS02245 at 443.570 kb on - strand, within LU632_RS02245 at 443.570 kb on - strand, within LU632_RS02245 at 443.587 kb on + strand, within LU632_RS02245 at 443.587 kb on + strand, within LU632_RS02245 at 443.619 kb on - strand, within LU632_RS02245 at 443.633 kb on + strand, within LU632_RS02245 at 443.635 kb on + strand, within LU632_RS02245 at 443.636 kb on - strand, within LU632_RS02245 at 443.636 kb on - strand, within LU632_RS02245 at 443.636 kb on - strand, within LU632_RS02245 at 443.759 kb on + strand, within LU632_RS02245 at 443.759 kb on + strand, within LU632_RS02245 at 443.760 kb on - strand, within LU632_RS02245 at 443.760 kb on - strand, within LU632_RS02245 at 443.760 kb on - strand, within LU632_RS02245 at 443.760 kb on - strand, within LU632_RS02245 at 443.760 kb on - strand, within LU632_RS02245 at 443.762 kb on - strand, within LU632_RS02245 at 443.795 kb on + strand, within LU632_RS02245 at 443.865 kb on - strand, within LU632_RS02245 at 443.869 kb on + strand, within LU632_RS02245 at 443.870 kb on - strand, within LU632_RS02245 at 443.927 kb on + strand at 443.927 kb on + strand at 443.927 kb on + strand at 443.928 kb on - strand at 443.928 kb on - strand at 443.928 kb on - strand at 443.959 kb on + strand at 444.022 kb on + strand at 444.022 kb on + strand at 444.022 kb on + strand at 444.023 kb on - strand at 444.397 kb on + strand at 444.398 kb on - strand at 444.401 kb on + strand at 444.416 kb on + strand at 444.416 kb on + strand at 444.417 kb on - strand at 444.418 kb on + strand at 444.493 kb on + strand at 444.597 kb on - strand, within LU632_RS02250 at 444.824 kb on + strand, within LU632_RS02250 at 444.825 kb on - strand, within LU632_RS02250 at 444.828 kb on + strand, within LU632_RS02250 at 444.829 kb on - strand, within LU632_RS02250 at 444.829 kb on - strand, within LU632_RS02250 at 444.830 kb on + strand, within LU632_RS02250 at 444.830 kb on + strand, within LU632_RS02250 at 444.831 kb on - strand, within LU632_RS02250 at 444.831 kb on - strand, within LU632_RS02250 at 444.847 kb on + strand, within LU632_RS02250 at 444.848 kb on - strand, within LU632_RS02250 at 444.922 kb on + strand, within LU632_RS02250 at 444.978 kb on + strand, within LU632_RS02250 at 444.978 kb on + strand, within LU632_RS02250 at 444.978 kb on + strand, within LU632_RS02250 at 444.992 kb on + strand, within LU632_RS02250 at 444.992 kb on + strand, within LU632_RS02250 at 444.993 kb on - strand, within LU632_RS02250 at 445.035 kb on + strand, within LU632_RS02250 at 445.055 kb on + strand, within LU632_RS02250 at 445.056 kb on - strand, within LU632_RS02250 at 445.106 kb on + strand, within LU632_RS02250 at 445.263 kb on - strand, within LU632_RS02250 at 445.265 kb on - strand, within LU632_RS02250 at 445.301 kb on + strand, within LU632_RS02250 at 445.304 kb on + strand, within LU632_RS02250 at 445.304 kb on + strand, within LU632_RS02250 at 445.392 kb on + strand, within LU632_RS02250 at 445.392 kb on + strand, within LU632_RS02250 at 445.392 kb on + strand, within LU632_RS02250 at 445.393 kb on - strand, within LU632_RS02250 at 445.393 kb on - strand, within LU632_RS02250 at 445.393 kb on - strand, within LU632_RS02250 at 445.476 kb on + strand at 445.476 kb on + strand at 445.476 kb on + strand at 445.476 kb on + strand at 445.505 kb on - strand at 445.585 kb on - strand at 445.585 kb on - strand at 445.633 kb on - strand at 445.713 kb on - strand at 445.713 kb on - strand at 445.720 kb on - strand at 445.725 kb on + strand at 445.725 kb on + strand at 445.725 kb on + strand at 445.725 kb on + strand at 445.725 kb on + strand at 445.726 kb on - strand at 445.726 kb on - strand at 445.726 kb on - strand at 445.913 kb on + strand at 445.913 kb on + strand at 445.957 kb on - strand at 445.966 kb on + strand at 446.007 kb on + strand at 446.032 kb on - strand at 446.042 kb on - strand at 446.046 kb on + strand at 446.046 kb on + strand at 446.046 kb on + strand at 446.046 kb on + strand at 446.049 kb on - strand at 446.061 kb on - strand at 446.064 kb on - strand at 446.089 kb on + strand at 446.089 kb on + strand at 446.089 kb on + strand at 446.089 kb on + strand at 446.090 kb on - strand at 446.090 kb on - strand at 446.090 kb on - strand at 446.091 kb on + strand at 446.092 kb on - strand at 446.195 kb on + strand, within LU632_RS02255 at 446.355 kb on - strand, within LU632_RS02255 at 446.378 kb on + strand, within LU632_RS02255 at 446.513 kb on + strand, within LU632_RS02255 at 446.514 kb on - strand, within LU632_RS02255 at 446.582 kb on + strand, within LU632_RS02255 at 446.583 kb on - strand, within LU632_RS02255 at 446.583 kb on - strand, within LU632_RS02255
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE2, Cucumber 9 Petiole 1 (TE2-S-C9-P1) remove 443,478 - +0.4 443,510 + -0.2 443,516 + -1.0 443,517 - -1.5 443,520 - -1.8 443,523 + +0.6 443,524 - +0.1 443,560 + LU632_RS02245 0.15 -0.3 443,567 + LU632_RS02245 0.16 +1.0 443,569 + LU632_RS02245 0.17 +2.3 443,570 - LU632_RS02245 0.17 -0.3 443,570 - LU632_RS02245 0.17 -1.5 443,587 + LU632_RS02245 0.21 -1.5 443,587 + LU632_RS02245 0.21 -1.4 443,619 - LU632_RS02245 0.29 +1.6 443,633 + LU632_RS02245 0.32 +0.5 443,635 + LU632_RS02245 0.32 +0.6 443,636 - LU632_RS02245 0.33 +1.9 443,636 - LU632_RS02245 0.33 +1.6 443,636 - LU632_RS02245 0.33 +0.5 443,759 + LU632_RS02245 0.62 +1.7 443,759 + LU632_RS02245 0.62 +1.1 443,760 - LU632_RS02245 0.62 -1.1 443,760 - LU632_RS02245 0.62 +0.2 443,760 - LU632_RS02245 0.62 -0.5 443,760 - LU632_RS02245 0.62 +0.2 443,760 - LU632_RS02245 0.62 +1.2 443,762 - LU632_RS02245 0.63 -2.2 443,795 + LU632_RS02245 0.70 -0.7 443,865 - LU632_RS02245 0.87 -0.2 443,869 + LU632_RS02245 0.88 -0.2 443,870 - LU632_RS02245 0.88 -1.8 443,927 + -0.8 443,927 + +1.7 443,927 + -2.0 443,928 - -0.0 443,928 - -0.4 443,928 - -1.0 443,959 + +1.8 444,022 + +1.7 444,022 + -2.4 444,022 + -2.0 444,023 - -1.1 444,397 + +0.9 444,398 - -1.5 444,401 + -2.2 444,416 + +0.4 444,416 + +0.2 444,417 - -0.8 444,418 + +1.6 444,493 + +0.8 444,597 - LU632_RS02250 0.18 +0.8 444,824 + LU632_RS02250 0.37 +0.3 444,825 - LU632_RS02250 0.37 -0.2 444,828 + LU632_RS02250 0.37 +2.4 444,829 - LU632_RS02250 0.37 -0.7 444,829 - LU632_RS02250 0.37 +0.5 444,830 + LU632_RS02250 0.37 +0.2 444,830 + LU632_RS02250 0.37 +1.4 444,831 - LU632_RS02250 0.37 -2.0 444,831 - LU632_RS02250 0.37 -0.1 444,847 + LU632_RS02250 0.39 -0.5 444,848 - LU632_RS02250 0.39 +0.1 444,922 + LU632_RS02250 0.45 -3.9 444,978 + LU632_RS02250 0.50 +0.3 444,978 + LU632_RS02250 0.50 +2.4 444,978 + LU632_RS02250 0.50 -2.5 444,992 + LU632_RS02250 0.51 -2.8 444,992 + LU632_RS02250 0.51 -0.5 444,993 - LU632_RS02250 0.51 +0.8 445,035 + LU632_RS02250 0.54 -0.2 445,055 + LU632_RS02250 0.56 +0.8 445,056 - LU632_RS02250 0.56 -0.8 445,106 + LU632_RS02250 0.60 -0.2 445,263 - LU632_RS02250 0.73 +1.6 445,265 - LU632_RS02250 0.73 -2.4 445,301 + LU632_RS02250 0.76 -1.0 445,304 + LU632_RS02250 0.77 -0.5 445,304 + LU632_RS02250 0.77 +0.7 445,392 + LU632_RS02250 0.84 +0.9 445,392 + LU632_RS02250 0.84 -2.4 445,392 + LU632_RS02250 0.84 -0.0 445,393 - LU632_RS02250 0.84 +1.3 445,393 - LU632_RS02250 0.84 -1.2 445,393 - LU632_RS02250 0.84 +0.7 445,476 + -0.4 445,476 + +0.5 445,476 + -0.5 445,476 + +0.8 445,505 - -0.8 445,585 - -0.8 445,585 - +0.3 445,633 - -0.8 445,713 - -1.5 445,713 - -0.0 445,720 - +0.5 445,725 + +0.5 445,725 + +1.8 445,725 + +0.7 445,725 + +1.2 445,725 + +0.1 445,726 - +1.0 445,726 - -0.8 445,726 - +0.8 445,913 + +0.2 445,913 + +0.4 445,957 - -0.9 445,966 + +0.3 446,007 + +0.7 446,032 - -1.8 446,042 - -2.0 446,046 + -0.4 446,046 + -1.0 446,046 + +0.8 446,046 + +0.8 446,049 - -1.8 446,061 - +0.4 446,064 - -1.1 446,089 + -1.2 446,089 + -2.0 446,089 + -0.3 446,089 + +1.7 446,090 - +1.2 446,090 - +0.8 446,090 - +1.2 446,091 + +0.1 446,092 - -0.3 446,195 + LU632_RS02255 0.15 -0.4 446,355 - LU632_RS02255 0.43 -0.5 446,378 + LU632_RS02255 0.47 -0.0 446,513 + LU632_RS02255 0.70 +0.4 446,514 - LU632_RS02255 0.70 -0.7 446,582 + LU632_RS02255 0.82 -1.5 446,583 - LU632_RS02255 0.82 -0.5 446,583 - LU632_RS02255 0.82 -2.2
Or see this region's nucleotide sequence