Experiment: Experiment:TE2, Cucumber 9 Petiole 1 (TE2-S-C9-P1)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS02240 and LU632_RS02245 are separated by 132 nucleotides
LU632_RS02240: LU632_RS02240 - hypothetical protein, at 443,061 to 443,366
_RS02240
LU632_RS02245: LU632_RS02245 - hypothetical protein, at 443,499 to 443,918
_RS02245
Position (kb) 443
444 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 442.226 kb on - strand at 442.226 kb on - strand at 442.226 kb on - strand at 442.261 kb on - strand at 442.281 kb on - strand at 442.317 kb on - strand at 442.333 kb on + strand at 442.391 kb on + strand at 442.392 kb on - strand at 442.444 kb on + strand at 442.444 kb on + strand at 442.444 kb on + strand at 442.444 kb on + strand at 442.445 kb on - strand at 442.448 kb on + strand at 442.448 kb on + strand at 442.458 kb on - strand at 442.553 kb on + strand at 442.676 kb on - strand at 442.676 kb on - strand at 442.758 kb on + strand at 442.785 kb on + strand at 442.785 kb on + strand at 442.785 kb on + strand at 442.785 kb on + strand at 442.786 kb on - strand at 442.786 kb on - strand at 442.786 kb on - strand at 442.786 kb on - strand at 442.786 kb on - strand at 442.856 kb on + strand at 442.856 kb on + strand at 442.961 kb on + strand at 442.961 kb on + strand at 442.961 kb on + strand at 442.962 kb on - strand at 443.003 kb on - strand at 443.077 kb on - strand at 443.111 kb on + strand, within LU632_RS02240 at 443.111 kb on + strand, within LU632_RS02240 at 443.111 kb on + strand, within LU632_RS02240 at 443.112 kb on - strand, within LU632_RS02240 at 443.113 kb on + strand, within LU632_RS02240 at 443.114 kb on - strand, within LU632_RS02240 at 443.114 kb on - strand, within LU632_RS02240 at 443.167 kb on - strand, within LU632_RS02240 at 443.229 kb on + strand, within LU632_RS02240 at 443.230 kb on - strand, within LU632_RS02240 at 443.232 kb on - strand, within LU632_RS02240 at 443.240 kb on + strand, within LU632_RS02240 at 443.291 kb on - strand, within LU632_RS02240 at 443.293 kb on - strand, within LU632_RS02240 at 443.321 kb on - strand, within LU632_RS02240 at 443.341 kb on - strand at 443.478 kb on - strand at 443.510 kb on + strand at 443.516 kb on + strand at 443.517 kb on - strand at 443.520 kb on - strand at 443.523 kb on + strand at 443.524 kb on - strand at 443.560 kb on + strand, within LU632_RS02245 at 443.567 kb on + strand, within LU632_RS02245 at 443.569 kb on + strand, within LU632_RS02245 at 443.570 kb on - strand, within LU632_RS02245 at 443.570 kb on - strand, within LU632_RS02245 at 443.587 kb on + strand, within LU632_RS02245 at 443.587 kb on + strand, within LU632_RS02245 at 443.619 kb on - strand, within LU632_RS02245 at 443.633 kb on + strand, within LU632_RS02245 at 443.635 kb on + strand, within LU632_RS02245 at 443.636 kb on - strand, within LU632_RS02245 at 443.636 kb on - strand, within LU632_RS02245 at 443.636 kb on - strand, within LU632_RS02245 at 443.759 kb on + strand, within LU632_RS02245 at 443.759 kb on + strand, within LU632_RS02245 at 443.760 kb on - strand, within LU632_RS02245 at 443.760 kb on - strand, within LU632_RS02245 at 443.760 kb on - strand, within LU632_RS02245 at 443.760 kb on - strand, within LU632_RS02245 at 443.760 kb on - strand, within LU632_RS02245 at 443.762 kb on - strand, within LU632_RS02245 at 443.795 kb on + strand, within LU632_RS02245 at 443.865 kb on - strand, within LU632_RS02245 at 443.869 kb on + strand, within LU632_RS02245 at 443.870 kb on - strand, within LU632_RS02245 at 443.927 kb on + strand at 443.927 kb on + strand at 443.927 kb on + strand at 443.928 kb on - strand at 443.928 kb on - strand at 443.928 kb on - strand at 443.959 kb on + strand at 444.022 kb on + strand at 444.022 kb on + strand at 444.022 kb on + strand at 444.023 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE2, Cucumber 9 Petiole 1 (TE2-S-C9-P1) remove 442,226 - -1.3 442,226 - -1.8 442,226 - -0.8 442,261 - -0.9 442,281 - +0.0 442,317 - -1.5 442,333 + -0.5 442,391 + -1.7 442,392 - +2.5 442,444 + -2.3 442,444 + +0.8 442,444 + +0.4 442,444 + -0.3 442,445 - +1.8 442,448 + +0.8 442,448 + +0.3 442,458 - -1.7 442,553 + -0.4 442,676 - -0.4 442,676 - +2.3 442,758 + -0.0 442,785 + +3.5 442,785 + +2.2 442,785 + +1.6 442,785 + +2.0 442,786 - +1.0 442,786 - -4.1 442,786 - -2.0 442,786 - +2.0 442,786 - +0.1 442,856 + +0.0 442,856 + +0.8 442,961 + +2.8 442,961 + -0.1 442,961 + -0.2 442,962 - -1.1 443,003 - +0.7 443,077 - +0.9 443,111 + LU632_RS02240 0.16 -1.3 443,111 + LU632_RS02240 0.16 -0.2 443,111 + LU632_RS02240 0.16 -0.8 443,112 - LU632_RS02240 0.17 -0.2 443,113 + LU632_RS02240 0.17 -0.5 443,114 - LU632_RS02240 0.17 -1.7 443,114 - LU632_RS02240 0.17 +0.8 443,167 - LU632_RS02240 0.35 +1.1 443,229 + LU632_RS02240 0.55 +1.2 443,230 - LU632_RS02240 0.55 -0.9 443,232 - LU632_RS02240 0.56 +2.3 443,240 + LU632_RS02240 0.58 +1.0 443,291 - LU632_RS02240 0.75 +1.4 443,293 - LU632_RS02240 0.76 +3.3 443,321 - LU632_RS02240 0.85 -2.5 443,341 - +4.4 443,478 - +0.4 443,510 + -0.2 443,516 + -1.0 443,517 - -1.5 443,520 - -1.8 443,523 + +0.6 443,524 - +0.1 443,560 + LU632_RS02245 0.15 -0.3 443,567 + LU632_RS02245 0.16 +1.0 443,569 + LU632_RS02245 0.17 +2.3 443,570 - LU632_RS02245 0.17 -0.3 443,570 - LU632_RS02245 0.17 -1.5 443,587 + LU632_RS02245 0.21 -1.5 443,587 + LU632_RS02245 0.21 -1.4 443,619 - LU632_RS02245 0.29 +1.6 443,633 + LU632_RS02245 0.32 +0.5 443,635 + LU632_RS02245 0.32 +0.6 443,636 - LU632_RS02245 0.33 +1.9 443,636 - LU632_RS02245 0.33 +1.6 443,636 - LU632_RS02245 0.33 +0.5 443,759 + LU632_RS02245 0.62 +1.7 443,759 + LU632_RS02245 0.62 +1.1 443,760 - LU632_RS02245 0.62 -1.1 443,760 - LU632_RS02245 0.62 +0.2 443,760 - LU632_RS02245 0.62 -0.5 443,760 - LU632_RS02245 0.62 +0.2 443,760 - LU632_RS02245 0.62 +1.2 443,762 - LU632_RS02245 0.63 -2.2 443,795 + LU632_RS02245 0.70 -0.7 443,865 - LU632_RS02245 0.87 -0.2 443,869 + LU632_RS02245 0.88 -0.2 443,870 - LU632_RS02245 0.88 -1.8 443,927 + -0.8 443,927 + +1.7 443,927 + -2.0 443,928 - -0.0 443,928 - -0.4 443,928 - -1.0 443,959 + +1.8 444,022 + +1.7 444,022 + -2.4 444,022 + -2.0 444,023 - -1.1
Or see this region's nucleotide sequence