Experiment: Experiment:TE2, Cucumber 9 Petiole 1 (TE2-S-C9-P1)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt miaA and hfq are separated by 101 nucleotides hfq and hflX are separated by 198 nucleotides hflX and hflK are separated by 67 nucleotides
LU632_RS02050: miaA - tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA, at 403,023 to 403,973
miaA
LU632_RS02055: hfq - RNA chaperone Hfq, at 404,075 to 404,386
hfq
LU632_RS02060: hflX - GTPase HflX, at 404,585 to 405,865
hflX
LU632_RS02065: hflK - FtsH protease activity modulator HflK, at 405,933 to 407,174
hflK
Position (kb) 404
405
406 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 403.722 kb on + strand, within miaA at 404.017 kb on + strand at 404.507 kb on + strand at 404.513 kb on + strand at 404.747 kb on - strand, within hflX at 404.932 kb on + strand, within hflX at 405.082 kb on - strand, within hflX at 405.094 kb on + strand, within hflX at 405.094 kb on + strand, within hflX at 405.097 kb on + strand, within hflX at 405.098 kb on - strand, within hflX at 405.098 kb on - strand, within hflX at 405.223 kb on - strand, within hflX at 405.223 kb on - strand, within hflX at 405.251 kb on + strand, within hflX at 405.331 kb on - strand, within hflX at 405.454 kb on + strand, within hflX at 405.455 kb on - strand, within hflX at 405.591 kb on + strand, within hflX at 405.688 kb on + strand, within hflX at 405.795 kb on + strand at 405.799 kb on + strand at 405.854 kb on + strand at 405.855 kb on - strand at 405.880 kb on + strand at 405.915 kb on + strand at 406.398 kb on + strand, within hflK at 406.423 kb on - strand, within hflK at 406.480 kb on + strand, within hflK at 406.613 kb on + strand, within hflK at 406.695 kb on + strand, within hflK at 406.695 kb on + strand, within hflK at 406.696 kb on - strand, within hflK at 406.782 kb on + strand, within hflK
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE2, Cucumber 9 Petiole 1 (TE2-S-C9-P1) remove 403,722 + miaA LU632_RS02050 0.74 -1.6 404,017 + +2.0 404,507 + -1.5 404,513 + +2.5 404,747 - hflX LU632_RS02060 0.13 -2.2 404,932 + hflX LU632_RS02060 0.27 -0.8 405,082 - hflX LU632_RS02060 0.39 +0.8 405,094 + hflX LU632_RS02060 0.40 -1.8 405,094 + hflX LU632_RS02060 0.40 -2.4 405,097 + hflX LU632_RS02060 0.40 +0.8 405,098 - hflX LU632_RS02060 0.40 -1.2 405,098 - hflX LU632_RS02060 0.40 -2.2 405,223 - hflX LU632_RS02060 0.50 +1.1 405,223 - hflX LU632_RS02060 0.50 -0.8 405,251 + hflX LU632_RS02060 0.52 -0.6 405,331 - hflX LU632_RS02060 0.58 -1.5 405,454 + hflX LU632_RS02060 0.68 -0.3 405,455 - hflX LU632_RS02060 0.68 -0.2 405,591 + hflX LU632_RS02060 0.79 -0.3 405,688 + hflX LU632_RS02060 0.86 -3.2 405,795 + +2.2 405,799 + +0.6 405,854 + -2.4 405,855 - -2.9 405,880 + +1.7 405,915 + -1.2 406,398 + hflK LU632_RS02065 0.37 -2.0 406,423 - hflK LU632_RS02065 0.39 -0.8 406,480 + hflK LU632_RS02065 0.44 -3.1 406,613 + hflK LU632_RS02065 0.55 -0.2 406,695 + hflK LU632_RS02065 0.61 -1.2 406,695 + hflK LU632_RS02065 0.61 -2.6 406,696 - hflK LU632_RS02065 0.61 -0.2 406,782 + hflK LU632_RS02065 0.68 -0.2
Or see this region's nucleotide sequence