Experiment: Experiment:TE2, Cucumber 9 Petiole 1 (TE2-S-C9-P1)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt mutL and miaA overlap by 8 nucleotides miaA and hfq are separated by 101 nucleotides hfq and hflX are separated by 198 nucleotides
LU632_RS02045: mutL - DNA mismatch repair endonuclease MutL, at 401,138 to 403,030
mutL
LU632_RS02050: miaA - tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA, at 403,023 to 403,973
miaA
LU632_RS02055: hfq - RNA chaperone Hfq, at 404,075 to 404,386
hfq
LU632_RS02060: hflX - GTPase HflX, at 404,585 to 405,865
hflX
Position (kb) 403
404 Strain fitness (log2 ratio) -2
-1
0
1
2 at 402.042 kb on + strand, within mutL at 402.042 kb on + strand, within mutL at 402.087 kb on + strand, within mutL at 402.088 kb on - strand, within mutL at 402.390 kb on + strand, within mutL at 402.465 kb on + strand, within mutL at 402.466 kb on - strand, within mutL at 402.518 kb on + strand, within mutL at 402.682 kb on - strand, within mutL at 402.707 kb on + strand, within mutL at 402.708 kb on - strand, within mutL at 402.708 kb on - strand, within mutL at 402.708 kb on - strand, within mutL at 402.874 kb on + strand at 402.988 kb on + strand at 403.257 kb on + strand, within miaA at 403.356 kb on + strand, within miaA at 403.356 kb on + strand, within miaA at 403.356 kb on + strand, within miaA at 403.357 kb on - strand, within miaA at 403.367 kb on - strand, within miaA at 403.418 kb on + strand, within miaA at 403.722 kb on + strand, within miaA at 404.017 kb on + strand at 404.507 kb on + strand at 404.513 kb on + strand at 404.747 kb on - strand, within hflX at 404.932 kb on + strand, within hflX
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE2, Cucumber 9 Petiole 1 (TE2-S-C9-P1) remove 402,042 + mutL LU632_RS02045 0.48 -0.4 402,042 + mutL LU632_RS02045 0.48 +2.3 402,087 + mutL LU632_RS02045 0.50 -0.2 402,088 - mutL LU632_RS02045 0.50 -0.5 402,390 + mutL LU632_RS02045 0.66 -1.2 402,465 + mutL LU632_RS02045 0.70 +1.0 402,466 - mutL LU632_RS02045 0.70 -1.8 402,518 + mutL LU632_RS02045 0.73 +0.3 402,682 - mutL LU632_RS02045 0.82 +1.8 402,707 + mutL LU632_RS02045 0.83 +0.1 402,708 - mutL LU632_RS02045 0.83 -0.8 402,708 - mutL LU632_RS02045 0.83 -0.5 402,708 - mutL LU632_RS02045 0.83 -0.2 402,874 + -1.8 402,988 + +0.5 403,257 + miaA LU632_RS02050 0.25 -1.2 403,356 + miaA LU632_RS02050 0.35 -1.2 403,356 + miaA LU632_RS02050 0.35 +1.8 403,356 + miaA LU632_RS02050 0.35 +2.0 403,357 - miaA LU632_RS02050 0.35 -1.8 403,367 - miaA LU632_RS02050 0.36 -1.2 403,418 + miaA LU632_RS02050 0.42 -1.6 403,722 + miaA LU632_RS02050 0.74 -1.6 404,017 + +2.0 404,507 + -1.5 404,513 + +2.5 404,747 - hflX LU632_RS02060 0.13 -2.2 404,932 + hflX LU632_RS02060 0.27 -0.8
Or see this region's nucleotide sequence