Experiment: Experiment:TE2, Cucumber 9 Petiole 1 (TE2-S-C9-P1)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS01720 and umuD are separated by 172 nucleotides umuD and umuC overlap by 1 nucleotides umuC and LU632_RS01735 are separated by 137 nucleotides
LU632_RS01720: LU632_RS01720 - N-6 DNA methylase, at 338,275 to 338,982
_RS01720
LU632_RS01725: umuD - translesion error-prone DNA polymerase V autoproteolytic subunit, at 339,155 to 339,589
umuD
LU632_RS01730: umuC - translesion error-prone DNA polymerase V subunit UmuC, at 339,589 to 340,854
umuC
LU632_RS01735: LU632_RS01735 - IS481 family transposase, at 340,992 to 342,032
_RS01735
Position (kb) 339
340
341 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 340.068 kb on - strand, within umuC at 340.220 kb on + strand, within umuC at 340.350 kb on - strand, within umuC at 340.357 kb on + strand, within umuC at 340.358 kb on - strand, within umuC at 340.453 kb on - strand, within umuC at 340.575 kb on + strand, within umuC at 340.575 kb on + strand, within umuC at 340.575 kb on + strand, within umuC at 340.575 kb on + strand, within umuC at 340.576 kb on - strand, within umuC at 340.576 kb on - strand, within umuC at 340.576 kb on - strand, within umuC at 340.576 kb on - strand, within umuC at 340.576 kb on - strand, within umuC at 340.576 kb on - strand, within umuC at 340.576 kb on - strand, within umuC at 340.577 kb on + strand, within umuC at 340.578 kb on - strand, within umuC at 340.578 kb on - strand, within umuC at 340.718 kb on + strand, within umuC at 340.718 kb on + strand, within umuC at 340.719 kb on - strand, within umuC at 340.741 kb on - strand at 340.741 kb on - strand at 340.741 kb on - strand at 340.792 kb on - strand at 340.808 kb on - strand at 340.809 kb on + strand at 340.827 kb on + strand at 340.880 kb on + strand at 340.881 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE2, Cucumber 9 Petiole 1 (TE2-S-C9-P1) remove 340,068 - umuC LU632_RS01730 0.38 +1.0 340,220 + umuC LU632_RS01730 0.50 -2.3 340,350 - umuC LU632_RS01730 0.60 -0.8 340,357 + umuC LU632_RS01730 0.61 +0.7 340,358 - umuC LU632_RS01730 0.61 +0.8 340,453 - umuC LU632_RS01730 0.68 +0.2 340,575 + umuC LU632_RS01730 0.78 +0.6 340,575 + umuC LU632_RS01730 0.78 +2.7 340,575 + umuC LU632_RS01730 0.78 +0.6 340,575 + umuC LU632_RS01730 0.78 +0.4 340,576 - umuC LU632_RS01730 0.78 -0.5 340,576 - umuC LU632_RS01730 0.78 +1.7 340,576 - umuC LU632_RS01730 0.78 -0.3 340,576 - umuC LU632_RS01730 0.78 -3.3 340,576 - umuC LU632_RS01730 0.78 +0.9 340,576 - umuC LU632_RS01730 0.78 -0.1 340,576 - umuC LU632_RS01730 0.78 +0.7 340,577 + umuC LU632_RS01730 0.78 +1.3 340,578 - umuC LU632_RS01730 0.78 -2.0 340,578 - umuC LU632_RS01730 0.78 +0.9 340,718 + umuC LU632_RS01730 0.89 +1.8 340,718 + umuC LU632_RS01730 0.89 -1.8 340,719 - umuC LU632_RS01730 0.89 -0.3 340,741 - +4.3 340,741 - -2.1 340,741 - -3.2 340,792 - -0.3 340,808 - +1.3 340,809 + -0.2 340,827 + -1.5 340,880 + +1.0 340,881 - -1.6
Or see this region's nucleotide sequence