Experiment: Experiment:TE2, Cucumber 9 Petiole 1 (TE2-S-C9-P1)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS01455 and LU632_RS01460 are separated by 11 nucleotides LU632_RS01460 and LU632_RS01465 are separated by 127 nucleotides LU632_RS01465 and LU632_RS01470 are separated by 10 nucleotides
LU632_RS01455: LU632_RS01455 - TIGR03756 family integrating conjugative element protein, at 298,461 to 299,432
_RS01455
LU632_RS01460: LU632_RS01460 - integrating conjugative element protein, at 299,444 to 300,148
_RS01460
LU632_RS01465: LU632_RS01465 - hypothetical protein, at 300,276 to 300,611
_RS01465
LU632_RS01470: LU632_RS01470 - conjugal transfer protein TraG N-terminal domain-containing protein, at 300,622 to 301,386
_RS01470
Position (kb) 300
301 Strain fitness (log2 ratio) -2
-1
0
1
2 at 299.795 kb on - strand, within LU632_RS01460 at 299.795 kb on - strand, within LU632_RS01460 at 299.927 kb on + strand, within LU632_RS01460 at 299.972 kb on + strand, within LU632_RS01460 at 299.973 kb on - strand, within LU632_RS01460 at 299.973 kb on - strand, within LU632_RS01460 at 300.321 kb on - strand, within LU632_RS01465 at 300.321 kb on - strand, within LU632_RS01465 at 300.509 kb on - strand, within LU632_RS01465 at 300.585 kb on + strand at 300.586 kb on - strand at 300.646 kb on + strand at 300.736 kb on - strand, within LU632_RS01470 at 300.736 kb on - strand, within LU632_RS01470 at 300.797 kb on + strand, within LU632_RS01470 at 300.797 kb on + strand, within LU632_RS01470 at 300.798 kb on - strand, within LU632_RS01470 at 300.798 kb on - strand, within LU632_RS01470 at 300.825 kb on + strand, within LU632_RS01470 at 300.826 kb on - strand, within LU632_RS01470 at 300.829 kb on + strand, within LU632_RS01470 at 300.829 kb on + strand, within LU632_RS01470 at 300.829 kb on + strand, within LU632_RS01470 at 300.830 kb on - strand, within LU632_RS01470 at 300.830 kb on - strand, within LU632_RS01470 at 300.830 kb on - strand, within LU632_RS01470 at 301.024 kb on + strand, within LU632_RS01470 at 301.028 kb on - strand, within LU632_RS01470
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE2, Cucumber 9 Petiole 1 (TE2-S-C9-P1) remove 299,795 - LU632_RS01460 0.50 -0.2 299,795 - LU632_RS01460 0.50 -1.6 299,927 + LU632_RS01460 0.69 -0.8 299,972 + LU632_RS01460 0.75 -1.1 299,973 - LU632_RS01460 0.75 +1.9 299,973 - LU632_RS01460 0.75 -0.8 300,321 - LU632_RS01465 0.13 -0.7 300,321 - LU632_RS01465 0.13 -2.2 300,509 - LU632_RS01465 0.69 -1.2 300,585 + -1.8 300,586 - +2.5 300,646 + +0.4 300,736 - LU632_RS01470 0.15 -1.5 300,736 - LU632_RS01470 0.15 +0.1 300,797 + LU632_RS01470 0.23 -0.1 300,797 + LU632_RS01470 0.23 -0.1 300,798 - LU632_RS01470 0.23 -1.2 300,798 - LU632_RS01470 0.23 -0.8 300,825 + LU632_RS01470 0.27 -1.2 300,826 - LU632_RS01470 0.27 -0.8 300,829 + LU632_RS01470 0.27 -1.7 300,829 + LU632_RS01470 0.27 -0.4 300,829 + LU632_RS01470 0.27 +0.5 300,830 - LU632_RS01470 0.27 -2.4 300,830 - LU632_RS01470 0.27 +0.3 300,830 - LU632_RS01470 0.27 -0.6 301,024 + LU632_RS01470 0.53 +0.4 301,028 - LU632_RS01470 0.53 +0.8
Or see this region's nucleotide sequence