Experiment: Experiment:TE2, Cucumber 9 Petiole 1 (TE2-S-C9-P1)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS01425 and LU632_RS01430 overlap by 4 nucleotides LU632_RS01430 and LU632_RS01435 are separated by 84 nucleotides LU632_RS01435 and LU632_RS01440 are separated by 15 nucleotides
LU632_RS01425: LU632_RS01425 - conjugative transfer ATPase, at 292,862 to 295,673
_RS01425
LU632_RS01430: LU632_RS01430 - hypothetical protein, at 295,670 to 296,074
_RS01430
LU632_RS01435: LU632_RS01435 - hypothetical protein, at 296,159 to 296,578
_RS01435
LU632_RS01440: LU632_RS01440 - hypothetical protein, at 296,594 to 297,268
_RS01440
Position (kb) 295
296
297 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 295.738 kb on + strand, within LU632_RS01430 at 295.738 kb on + strand, within LU632_RS01430 at 295.739 kb on - strand, within LU632_RS01430 at 296.581 kb on - strand at 296.614 kb on + strand at 296.614 kb on + strand at 296.614 kb on + strand at 296.615 kb on - strand at 296.615 kb on - strand at 296.654 kb on - strand at 296.654 kb on - strand at 296.655 kb on + strand at 296.671 kb on - strand, within LU632_RS01440 at 296.671 kb on - strand, within LU632_RS01440 at 296.671 kb on - strand, within LU632_RS01440 at 296.724 kb on + strand, within LU632_RS01440 at 296.729 kb on + strand, within LU632_RS01440 at 296.772 kb on + strand, within LU632_RS01440 at 296.793 kb on - strand, within LU632_RS01440 at 296.795 kb on - strand, within LU632_RS01440 at 296.795 kb on - strand, within LU632_RS01440 at 296.806 kb on + strand, within LU632_RS01440 at 296.806 kb on + strand, within LU632_RS01440 at 296.807 kb on - strand, within LU632_RS01440 at 296.807 kb on - strand, within LU632_RS01440 at 296.807 kb on - strand, within LU632_RS01440 at 296.807 kb on - strand, within LU632_RS01440 at 296.807 kb on - strand, within LU632_RS01440 at 296.807 kb on - strand, within LU632_RS01440 at 296.807 kb on - strand, within LU632_RS01440 at 296.808 kb on + strand, within LU632_RS01440 at 296.808 kb on + strand, within LU632_RS01440 at 296.809 kb on - strand, within LU632_RS01440 at 296.809 kb on - strand, within LU632_RS01440 at 296.809 kb on - strand, within LU632_RS01440 at 296.860 kb on + strand, within LU632_RS01440 at 296.898 kb on - strand, within LU632_RS01440 at 296.924 kb on + strand, within LU632_RS01440 at 296.924 kb on + strand, within LU632_RS01440 at 296.925 kb on - strand, within LU632_RS01440 at 296.925 kb on - strand, within LU632_RS01440 at 296.958 kb on - strand, within LU632_RS01440 at 297.014 kb on + strand, within LU632_RS01440 at 297.014 kb on + strand, within LU632_RS01440 at 297.014 kb on + strand, within LU632_RS01440 at 297.015 kb on - strand, within LU632_RS01440 at 297.015 kb on - strand, within LU632_RS01440
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE2, Cucumber 9 Petiole 1 (TE2-S-C9-P1) remove 295,738 + LU632_RS01430 0.17 -2.4 295,738 + LU632_RS01430 0.17 -0.7 295,739 - LU632_RS01430 0.17 -0.8 296,581 - +1.3 296,614 + -0.9 296,614 + -0.6 296,614 + -0.0 296,615 - +1.9 296,615 - +1.4 296,654 - -3.6 296,654 - -0.9 296,655 + +1.1 296,671 - LU632_RS01440 0.11 +0.8 296,671 - LU632_RS01440 0.11 -2.0 296,671 - LU632_RS01440 0.11 -1.8 296,724 + LU632_RS01440 0.19 -0.4 296,729 + LU632_RS01440 0.20 -2.7 296,772 + LU632_RS01440 0.26 +2.0 296,793 - LU632_RS01440 0.29 -0.8 296,795 - LU632_RS01440 0.30 +0.5 296,795 - LU632_RS01440 0.30 -1.7 296,806 + LU632_RS01440 0.31 +1.2 296,806 + LU632_RS01440 0.31 -2.1 296,807 - LU632_RS01440 0.32 +0.4 296,807 - LU632_RS01440 0.32 -0.5 296,807 - LU632_RS01440 0.32 -1.0 296,807 - LU632_RS01440 0.32 -0.8 296,807 - LU632_RS01440 0.32 -0.2 296,807 - LU632_RS01440 0.32 -1.5 296,807 - LU632_RS01440 0.32 -0.3 296,808 + LU632_RS01440 0.32 -0.2 296,808 + LU632_RS01440 0.32 +0.6 296,809 - LU632_RS01440 0.32 +1.5 296,809 - LU632_RS01440 0.32 -3.1 296,809 - LU632_RS01440 0.32 +1.1 296,860 + LU632_RS01440 0.39 -1.5 296,898 - LU632_RS01440 0.45 +0.7 296,924 + LU632_RS01440 0.49 -0.2 296,924 + LU632_RS01440 0.49 -1.6 296,925 - LU632_RS01440 0.49 -0.8 296,925 - LU632_RS01440 0.49 -0.1 296,958 - LU632_RS01440 0.54 -0.8 297,014 + LU632_RS01440 0.62 -0.0 297,014 + LU632_RS01440 0.62 -2.4 297,014 + LU632_RS01440 0.62 -1.5 297,015 - LU632_RS01440 0.62 +0.2 297,015 - LU632_RS01440 0.62 -0.6
Or see this region's nucleotide sequence