Experiment: Experiment:TE2, Cucumber 9 Petiole 1 (TE2-S-C9-P1)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS01400 and LU632_RS01405 are separated by 85 nucleotides LU632_RS01405 and LU632_RS01410 are separated by 8 nucleotides LU632_RS01410 and LU632_RS01415 are separated by 11 nucleotides LU632_RS01415 and LU632_RS01420 overlap by 14 nucleotides LU632_RS01420 and LU632_RS01425 overlap by 1 nucleotides
LU632_RS01400: LU632_RS01400 - TIGR03750 family conjugal transfer protein, at 289,635 to 289,724
_RS01400
LU632_RS01405: LU632_RS01405 - TIGR03749 family integrating conjugative element protein, at 289,810 to 290,676
_RS01405
LU632_RS01410: LU632_RS01410 - TIGR03752 family integrating conjugative element protein, at 290,685 to 292,199
_RS01410
LU632_RS01415: LU632_RS01415 - hypothetical protein, at 292,211 to 292,471
_RS01415
LU632_RS01420: LU632_RS01420 - TIGR03751 family conjugal transfer lipoprotein, at 292,458 to 292,862
_RS01420
LU632_RS01425: LU632_RS01425 - conjugative transfer ATPase, at 292,862 to 295,673
_RS01425
Position (kb) 290
291
292
293 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 289.715 kb on + strand, within LU632_RS01400 at 289.936 kb on - strand, within LU632_RS01405 at 289.936 kb on - strand, within LU632_RS01405 at 289.983 kb on + strand, within LU632_RS01405 at 290.137 kb on + strand, within LU632_RS01405 at 290.138 kb on - strand, within LU632_RS01405 at 290.248 kb on - strand, within LU632_RS01405 at 290.462 kb on + strand, within LU632_RS01405 at 290.468 kb on + strand, within LU632_RS01405 at 290.468 kb on + strand, within LU632_RS01405 at 290.469 kb on - strand, within LU632_RS01405 at 290.473 kb on - strand, within LU632_RS01405 at 290.487 kb on + strand, within LU632_RS01405 at 290.593 kb on + strand at 290.594 kb on - strand at 290.629 kb on - strand at 290.713 kb on + strand at 290.714 kb on - strand at 290.936 kb on + strand, within LU632_RS01410 at 290.936 kb on + strand, within LU632_RS01410 at 290.998 kb on + strand, within LU632_RS01410 at 290.998 kb on + strand, within LU632_RS01410 at 290.999 kb on - strand, within LU632_RS01410 at 291.306 kb on - strand, within LU632_RS01410 at 291.441 kb on + strand, within LU632_RS01410 at 291.503 kb on + strand, within LU632_RS01410 at 291.503 kb on + strand, within LU632_RS01410 at 291.504 kb on - strand, within LU632_RS01410 at 291.504 kb on - strand, within LU632_RS01410 at 291.777 kb on - strand, within LU632_RS01410 at 291.779 kb on + strand, within LU632_RS01410 at 291.779 kb on + strand, within LU632_RS01410 at 291.780 kb on - strand, within LU632_RS01410 at 291.839 kb on + strand, within LU632_RS01410 at 291.858 kb on + strand, within LU632_RS01410 at 292.074 kb on + strand at 292.075 kb on - strand at 292.075 kb on - strand at 292.108 kb on + strand at 292.109 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE2, Cucumber 9 Petiole 1 (TE2-S-C9-P1) remove 289,715 + LU632_RS01400 0.89 -1.8 289,936 - LU632_RS01405 0.15 +0.8 289,936 - LU632_RS01405 0.15 -0.6 289,983 + LU632_RS01405 0.20 -1.8 290,137 + LU632_RS01405 0.38 +0.5 290,138 - LU632_RS01405 0.38 +1.7 290,248 - LU632_RS01405 0.51 +0.7 290,462 + LU632_RS01405 0.75 -0.1 290,468 + LU632_RS01405 0.76 -0.2 290,468 + LU632_RS01405 0.76 +0.9 290,469 - LU632_RS01405 0.76 -1.2 290,473 - LU632_RS01405 0.76 -1.6 290,487 + LU632_RS01405 0.78 -1.0 290,593 + -3.2 290,594 - -3.3 290,629 - +4.0 290,713 + +1.6 290,714 - -1.0 290,936 + LU632_RS01410 0.17 -0.3 290,936 + LU632_RS01410 0.17 -2.9 290,998 + LU632_RS01410 0.21 -1.0 290,998 + LU632_RS01410 0.21 -1.2 290,999 - LU632_RS01410 0.21 +0.4 291,306 - LU632_RS01410 0.41 +4.4 291,441 + LU632_RS01410 0.50 -3.2 291,503 + LU632_RS01410 0.54 +3.1 291,503 + LU632_RS01410 0.54 -1.0 291,504 - LU632_RS01410 0.54 -2.4 291,504 - LU632_RS01410 0.54 -0.2 291,777 - LU632_RS01410 0.72 -0.6 291,779 + LU632_RS01410 0.72 -0.2 291,779 + LU632_RS01410 0.72 +1.1 291,780 - LU632_RS01410 0.72 -0.2 291,839 + LU632_RS01410 0.76 -0.2 291,858 + LU632_RS01410 0.77 +0.8 292,074 + +1.4 292,075 - +0.5 292,075 - +2.7 292,108 + +3.9 292,109 - +1.1
Or see this region's nucleotide sequence