Experiment: Experiment:TE2, Cucumber 9 Petiole 1 (TE2-S-C9-P1)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt crcB and LU632_RS01325 are separated by 76 nucleotides LU632_RS01325 and LU632_RS01330 are separated by 11 nucleotides LU632_RS01330 and LU632_RS01335 are separated by 6 nucleotides
LU632_RS01320: crcB - fluoride efflux transporter CrcB, at 273,679 to 274,059
crcB
LU632_RS01325: LU632_RS01325 - MFS transporter, at 274,136 to 274,643
_RS01325
LU632_RS01330: LU632_RS01330 - sugar porter family MFS transporter, at 274,655 to 274,951
_RS01330
LU632_RS01335: LU632_RS01335 - MFS transporter, at 274,958 to 275,260
_RS01335
Position (kb) 274
275 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 273.152 kb on - strand at 273.152 kb on - strand at 273.152 kb on - strand at 273.158 kb on - strand at 273.158 kb on - strand at 273.239 kb on - strand at 273.258 kb on + strand at 273.258 kb on + strand at 273.259 kb on - strand at 273.259 kb on - strand at 273.259 kb on - strand at 273.259 kb on - strand at 273.283 kb on - strand at 273.283 kb on - strand at 273.314 kb on - strand at 273.602 kb on + strand at 273.820 kb on - strand, within crcB at 273.897 kb on - strand, within crcB at 273.897 kb on - strand, within crcB at 273.906 kb on + strand, within crcB at 274.057 kb on + strand at 274.084 kb on - strand at 274.084 kb on - strand at 274.084 kb on - strand at 274.132 kb on + strand at 274.202 kb on + strand, within LU632_RS01325 at 274.492 kb on + strand, within LU632_RS01325 at 274.492 kb on + strand, within LU632_RS01325 at 274.530 kb on + strand, within LU632_RS01325 at 274.530 kb on + strand, within LU632_RS01325 at 274.530 kb on + strand, within LU632_RS01325 at 274.534 kb on - strand, within LU632_RS01325 at 274.534 kb on - strand, within LU632_RS01325 at 274.568 kb on + strand, within LU632_RS01325 at 274.625 kb on + strand at 274.648 kb on - strand at 274.671 kb on - strand at 274.671 kb on - strand at 274.728 kb on + strand, within LU632_RS01330 at 274.728 kb on + strand, within LU632_RS01330 at 274.729 kb on - strand, within LU632_RS01330 at 274.729 kb on - strand, within LU632_RS01330 at 274.741 kb on + strand, within LU632_RS01330 at 274.741 kb on + strand, within LU632_RS01330 at 274.744 kb on + strand, within LU632_RS01330 at 274.882 kb on + strand, within LU632_RS01330 at 274.882 kb on + strand, within LU632_RS01330 at 274.883 kb on - strand, within LU632_RS01330 at 274.883 kb on - strand, within LU632_RS01330 at 274.883 kb on - strand, within LU632_RS01330 at 274.883 kb on - strand, within LU632_RS01330 at 274.883 kb on - strand, within LU632_RS01330 at 274.969 kb on + strand at 274.983 kb on - strand at 275.095 kb on + strand, within LU632_RS01335 at 275.095 kb on + strand, within LU632_RS01335 at 275.096 kb on - strand, within LU632_RS01335 at 275.159 kb on + strand, within LU632_RS01335 at 275.176 kb on - strand, within LU632_RS01335 at 275.176 kb on - strand, within LU632_RS01335 at 275.176 kb on - strand, within LU632_RS01335 at 275.221 kb on + strand, within LU632_RS01335 at 275.299 kb on + strand at 275.300 kb on - strand at 275.303 kb on + strand at 275.303 kb on + strand at 275.303 kb on + strand at 275.303 kb on + strand at 275.304 kb on - strand at 275.304 kb on - strand at 275.304 kb on - strand at 275.304 kb on - strand at 275.304 kb on - strand at 275.332 kb on - strand at 275.332 kb on - strand at 275.332 kb on - strand at 275.332 kb on - strand at 275.332 kb on - strand at 275.332 kb on - strand at 275.333 kb on + strand at 275.333 kb on + strand at 275.334 kb on - strand at 275.334 kb on - strand at 275.334 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE2, Cucumber 9 Petiole 1 (TE2-S-C9-P1) remove 273,152 - +1.5 273,152 - +2.8 273,152 - +0.5 273,158 - +0.9 273,158 - -0.6 273,239 - -0.1 273,258 + +2.0 273,258 + +1.5 273,259 - +0.1 273,259 - -1.5 273,259 - -0.7 273,259 - -0.6 273,283 - -0.2 273,283 - +1.6 273,314 - -2.0 273,602 + +0.7 273,820 - crcB LU632_RS01320 0.37 -1.2 273,897 - crcB LU632_RS01320 0.57 -1.5 273,897 - crcB LU632_RS01320 0.57 -1.2 273,906 + crcB LU632_RS01320 0.60 +0.8 274,057 + +0.1 274,084 - +1.9 274,084 - -0.3 274,084 - -1.4 274,132 + +0.2 274,202 + LU632_RS01325 0.13 +1.5 274,492 + LU632_RS01325 0.70 -0.0 274,492 + LU632_RS01325 0.70 +1.7 274,530 + LU632_RS01325 0.78 +1.4 274,530 + LU632_RS01325 0.78 +0.4 274,530 + LU632_RS01325 0.78 -0.1 274,534 - LU632_RS01325 0.78 -0.4 274,534 - LU632_RS01325 0.78 +1.0 274,568 + LU632_RS01325 0.85 -1.2 274,625 + +0.8 274,648 - +1.8 274,671 - +3.3 274,671 - -1.2 274,728 + LU632_RS01330 0.25 -0.2 274,728 + LU632_RS01330 0.25 -0.5 274,729 - LU632_RS01330 0.25 -0.4 274,729 - LU632_RS01330 0.25 +2.5 274,741 + LU632_RS01330 0.29 -0.2 274,741 + LU632_RS01330 0.29 +1.4 274,744 + LU632_RS01330 0.30 -0.3 274,882 + LU632_RS01330 0.76 +1.8 274,882 + LU632_RS01330 0.76 -0.4 274,883 - LU632_RS01330 0.77 -1.2 274,883 - LU632_RS01330 0.77 +0.0 274,883 - LU632_RS01330 0.77 +0.7 274,883 - LU632_RS01330 0.77 -0.9 274,883 - LU632_RS01330 0.77 +0.2 274,969 + +2.2 274,983 - -1.2 275,095 + LU632_RS01335 0.45 -2.0 275,095 + LU632_RS01335 0.45 -2.7 275,096 - LU632_RS01335 0.46 -0.1 275,159 + LU632_RS01335 0.66 -1.5 275,176 - LU632_RS01335 0.72 +1.0 275,176 - LU632_RS01335 0.72 -2.4 275,176 - LU632_RS01335 0.72 +2.1 275,221 + LU632_RS01335 0.87 +1.4 275,299 + +1.0 275,300 - +0.4 275,303 + -0.4 275,303 + -1.1 275,303 + +3.4 275,303 + +1.8 275,304 - -2.7 275,304 - -0.4 275,304 - -1.5 275,304 - -2.7 275,304 - +0.6 275,332 - -0.8 275,332 - -2.0 275,332 - -1.5 275,332 - +3.5 275,332 - -1.8 275,332 - -0.8 275,333 + -0.0 275,333 + -0.9 275,334 - +0.8 275,334 - -0.1 275,334 - +0.4
Or see this region's nucleotide sequence