Experiment: Experiment:TE2, Cucumber 9 Petiole 1 (TE2-S-C9-P1)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt tnpA and LU632_RS01010 are separated by 190 nucleotides LU632_RS01010 and purD are separated by 163 nucleotides purD and purH are separated by 14 nucleotides
LU632_RS01005: tnpA - IS200/IS605 family transposase, at 216,552 to 216,992
tnpA
LU632_RS01010: LU632_RS01010 - sugar phosphate isomerase/epimerase, at 217,183 to 217,332
_RS01010
LU632_RS01015: purD - phosphoribosylamine--glycine ligase, at 217,496 to 218,776
purD
LU632_RS01020: purH - bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase, at 218,791 to 220,380
purH
Position (kb) 217
218
219 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 217.164 kb on + strand at 217.196 kb on - strand at 217.247 kb on - strand, within LU632_RS01010 at 217.253 kb on + strand, within LU632_RS01010 at 217.268 kb on - strand, within LU632_RS01010 at 217.370 kb on + strand at 217.370 kb on + strand at 217.370 kb on + strand at 217.370 kb on + strand at 217.370 kb on + strand at 217.371 kb on - strand at 217.371 kb on - strand at 217.377 kb on + strand at 217.378 kb on - strand at 217.378 kb on - strand at 217.378 kb on - strand at 217.379 kb on + strand at 217.385 kb on + strand at 217.385 kb on + strand at 217.386 kb on - strand at 217.386 kb on - strand at 217.386 kb on - strand at 217.386 kb on - strand at 217.401 kb on + strand at 217.402 kb on - strand at 217.402 kb on - strand at 217.574 kb on - strand at 217.575 kb on + strand at 217.575 kb on + strand at 217.575 kb on + strand at 217.576 kb on - strand at 217.628 kb on + strand, within purD at 217.628 kb on + strand, within purD at 217.690 kb on + strand, within purD at 217.743 kb on + strand, within purD at 217.743 kb on + strand, within purD at 217.744 kb on - strand, within purD at 217.773 kb on - strand, within purD at 217.833 kb on - strand, within purD at 217.915 kb on + strand, within purD at 218.131 kb on + strand, within purD at 218.132 kb on - strand, within purD at 218.132 kb on - strand, within purD at 218.227 kb on + strand, within purD at 218.227 kb on + strand, within purD at 218.320 kb on + strand, within purD at 218.321 kb on - strand, within purD at 218.366 kb on - strand, within purD at 218.366 kb on - strand, within purD at 218.372 kb on + strand, within purD at 218.373 kb on - strand, within purD at 218.377 kb on - strand, within purD at 218.377 kb on - strand, within purD at 218.621 kb on - strand, within purD at 218.766 kb on - strand at 218.793 kb on - strand at 219.030 kb on + strand, within purH at 219.067 kb on - strand, within purH at 219.100 kb on - strand, within purH at 219.112 kb on + strand, within purH at 219.113 kb on - strand, within purH at 219.193 kb on + strand, within purH at 219.194 kb on - strand, within purH at 219.316 kb on - strand, within purH at 219.334 kb on - strand, within purH at 219.423 kb on + strand, within purH at 219.471 kb on - strand, within purH at 219.597 kb on - strand, within purH at 219.661 kb on + strand, within purH at 219.662 kb on - strand, within purH at 219.662 kb on - strand, within purH at 219.662 kb on - strand, within purH at 219.665 kb on + strand, within purH at 219.665 kb on + strand, within purH at 219.666 kb on - strand, within purH
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE2, Cucumber 9 Petiole 1 (TE2-S-C9-P1) remove 217,164 + -1.2 217,196 - +1.5 217,247 - LU632_RS01010 0.43 -0.3 217,253 + LU632_RS01010 0.47 -0.1 217,268 - LU632_RS01010 0.57 +0.4 217,370 + +0.8 217,370 + +0.6 217,370 + -0.2 217,370 + -1.2 217,370 + -0.6 217,371 - -0.2 217,371 - -0.4 217,377 + -0.4 217,378 - -0.9 217,378 - -0.2 217,378 - +0.4 217,379 + -1.4 217,385 + +1.3 217,385 + -1.4 217,386 - -1.4 217,386 - +1.8 217,386 - +0.0 217,386 - +0.5 217,401 + -2.7 217,402 - -1.7 217,402 - +0.9 217,574 - -1.1 217,575 + -3.2 217,575 + -0.8 217,575 + -2.1 217,576 - -1.5 217,628 + purD LU632_RS01015 0.10 +2.0 217,628 + purD LU632_RS01015 0.10 -2.3 217,690 + purD LU632_RS01015 0.15 -0.6 217,743 + purD LU632_RS01015 0.19 -1.1 217,743 + purD LU632_RS01015 0.19 -1.8 217,744 - purD LU632_RS01015 0.19 -1.0 217,773 - purD LU632_RS01015 0.22 -1.4 217,833 - purD LU632_RS01015 0.26 -2.6 217,915 + purD LU632_RS01015 0.33 -1.0 218,131 + purD LU632_RS01015 0.50 -0.6 218,132 - purD LU632_RS01015 0.50 -0.8 218,132 - purD LU632_RS01015 0.50 -3.2 218,227 + purD LU632_RS01015 0.57 +0.8 218,227 + purD LU632_RS01015 0.57 -3.5 218,320 + purD LU632_RS01015 0.64 -1.1 218,321 - purD LU632_RS01015 0.64 +0.8 218,366 - purD LU632_RS01015 0.68 -1.1 218,366 - purD LU632_RS01015 0.68 -0.2 218,372 + purD LU632_RS01015 0.68 -2.1 218,373 - purD LU632_RS01015 0.68 -2.2 218,377 - purD LU632_RS01015 0.69 -2.4 218,377 - purD LU632_RS01015 0.69 -1.0 218,621 - purD LU632_RS01015 0.88 -1.2 218,766 - -0.2 218,793 - +2.0 219,030 + purH LU632_RS01020 0.15 -1.3 219,067 - purH LU632_RS01020 0.17 +0.8 219,100 - purH LU632_RS01020 0.19 -0.8 219,112 + purH LU632_RS01020 0.20 -0.2 219,113 - purH LU632_RS01020 0.20 -2.2 219,193 + purH LU632_RS01020 0.25 +0.1 219,194 - purH LU632_RS01020 0.25 -1.2 219,316 - purH LU632_RS01020 0.33 +0.8 219,334 - purH LU632_RS01020 0.34 -3.2 219,423 + purH LU632_RS01020 0.40 -3.4 219,471 - purH LU632_RS01020 0.43 -1.2 219,597 - purH LU632_RS01020 0.51 -0.8 219,661 + purH LU632_RS01020 0.55 -1.8 219,662 - purH LU632_RS01020 0.55 -2.1 219,662 - purH LU632_RS01020 0.55 -0.8 219,662 - purH LU632_RS01020 0.55 -2.1 219,665 + purH LU632_RS01020 0.55 +0.8 219,665 + purH LU632_RS01020 0.55 +0.8 219,666 - purH LU632_RS01020 0.55 -1.2
Or see this region's nucleotide sequence