Experiment: Experiment:TE2, Cucumber 9 Petiole 1 (TE2-S-C9-P1)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS00705 and tssB are separated by 124 nucleotides tssB and tssC are separated by 17 nucleotides tssC and LU632_RS00720 are separated by 151 nucleotides LU632_RS00720 and tssJ are separated by 130 nucleotides
LU632_RS00705: LU632_RS00705 - type 1 fimbrial protein, at 149,529 to 150,110
_RS00705
LU632_RS00710: tssB - type VI secretion system contractile sheath small subunit, at 150,235 to 150,768
tssB
LU632_RS00715: tssC - type VI secretion system contractile sheath large subunit, at 150,786 to 152,285
tssC
LU632_RS00720: LU632_RS00720 - Hcp family type VI secretion system effector, at 152,437 to 152,922
_RS00720
LU632_RS00725: tssJ - type VI secretion system lipoprotein TssJ, at 153,053 to 153,601
tssJ
Position (kb) 150
151
152
153 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 149.787 kb on - strand, within LU632_RS00705 at 150.021 kb on + strand, within LU632_RS00705 at 150.033 kb on + strand, within LU632_RS00705 at 150.299 kb on + strand, within tssB at 150.374 kb on + strand, within tssB at 150.640 kb on + strand, within tssB at 150.640 kb on + strand, within tssB at 150.640 kb on + strand, within tssB at 150.641 kb on - strand, within tssB at 150.795 kb on - strand at 150.795 kb on - strand at 150.809 kb on + strand at 151.029 kb on - strand, within tssC at 151.104 kb on - strand, within tssC at 151.124 kb on + strand, within tssC at 151.148 kb on + strand, within tssC at 151.166 kb on + strand, within tssC at 151.167 kb on - strand, within tssC at 151.224 kb on + strand, within tssC at 151.224 kb on + strand, within tssC at 151.295 kb on + strand, within tssC at 151.296 kb on - strand, within tssC at 151.316 kb on - strand, within tssC at 151.316 kb on - strand, within tssC at 151.459 kb on - strand, within tssC at 151.548 kb on - strand, within tssC at 151.548 kb on - strand, within tssC at 151.556 kb on + strand, within tssC at 151.575 kb on - strand, within tssC at 151.607 kb on + strand, within tssC at 151.614 kb on + strand, within tssC at 151.614 kb on + strand, within tssC at 151.615 kb on - strand, within tssC at 151.615 kb on - strand, within tssC at 151.730 kb on - strand, within tssC at 151.740 kb on - strand, within tssC at 151.962 kb on + strand, within tssC at 151.962 kb on + strand, within tssC at 151.962 kb on + strand, within tssC at 151.963 kb on - strand, within tssC at 151.964 kb on + strand, within tssC at 151.964 kb on + strand, within tssC at 151.964 kb on + strand, within tssC at 151.964 kb on + strand, within tssC at 151.965 kb on - strand, within tssC at 151.965 kb on - strand, within tssC at 151.965 kb on - strand, within tssC at 152.003 kb on + strand, within tssC at 152.031 kb on - strand, within tssC at 152.079 kb on + strand, within tssC at 152.079 kb on + strand, within tssC at 152.080 kb on - strand, within tssC at 152.084 kb on - strand, within tssC at 152.165 kb on - strand at 152.165 kb on - strand at 152.165 kb on - strand at 152.184 kb on + strand at 152.184 kb on + strand at 152.243 kb on - strand at 152.246 kb on + strand at 152.247 kb on - strand at 152.278 kb on + strand at 152.344 kb on + strand at 152.344 kb on + strand at 152.345 kb on - strand at 152.412 kb on - strand at 152.448 kb on + strand at 152.554 kb on - strand, within LU632_RS00720 at 152.605 kb on - strand, within LU632_RS00720 at 152.645 kb on + strand, within LU632_RS00720 at 152.645 kb on + strand, within LU632_RS00720 at 152.651 kb on - strand, within LU632_RS00720 at 152.671 kb on - strand, within LU632_RS00720 at 152.893 kb on + strand at 153.106 kb on - strand at 153.224 kb on - strand, within tssJ at 153.249 kb on + strand, within tssJ at 153.250 kb on - strand, within tssJ
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE2, Cucumber 9 Petiole 1 (TE2-S-C9-P1) remove 149,787 - LU632_RS00705 0.44 -1.4 150,021 + LU632_RS00705 0.85 +1.8 150,033 + LU632_RS00705 0.87 -0.5 150,299 + tssB LU632_RS00710 0.12 +1.0 150,374 + tssB LU632_RS00710 0.26 -2.0 150,640 + tssB LU632_RS00710 0.76 +0.3 150,640 + tssB LU632_RS00710 0.76 -0.2 150,640 + tssB LU632_RS00710 0.76 -0.5 150,641 - tssB LU632_RS00710 0.76 -1.2 150,795 - -0.0 150,795 - +1.1 150,809 + -0.1 151,029 - tssC LU632_RS00715 0.16 -0.8 151,104 - tssC LU632_RS00715 0.21 +0.4 151,124 + tssC LU632_RS00715 0.23 -2.2 151,148 + tssC LU632_RS00715 0.24 -3.4 151,166 + tssC LU632_RS00715 0.25 -4.2 151,167 - tssC LU632_RS00715 0.25 +0.9 151,224 + tssC LU632_RS00715 0.29 +1.2 151,224 + tssC LU632_RS00715 0.29 +1.2 151,295 + tssC LU632_RS00715 0.34 -0.4 151,296 - tssC LU632_RS00715 0.34 +0.2 151,316 - tssC LU632_RS00715 0.35 -1.6 151,316 - tssC LU632_RS00715 0.35 +0.3 151,459 - tssC LU632_RS00715 0.45 +0.2 151,548 - tssC LU632_RS00715 0.51 -2.9 151,548 - tssC LU632_RS00715 0.51 -0.4 151,556 + tssC LU632_RS00715 0.51 -1.2 151,575 - tssC LU632_RS00715 0.53 +1.0 151,607 + tssC LU632_RS00715 0.55 -2.0 151,614 + tssC LU632_RS00715 0.55 -0.4 151,614 + tssC LU632_RS00715 0.55 -1.4 151,615 - tssC LU632_RS00715 0.55 -3.6 151,615 - tssC LU632_RS00715 0.55 -1.5 151,730 - tssC LU632_RS00715 0.63 +0.3 151,740 - tssC LU632_RS00715 0.64 +0.9 151,962 + tssC LU632_RS00715 0.78 +1.4 151,962 + tssC LU632_RS00715 0.78 -0.8 151,962 + tssC LU632_RS00715 0.78 -0.2 151,963 - tssC LU632_RS00715 0.78 +2.2 151,964 + tssC LU632_RS00715 0.79 -0.0 151,964 + tssC LU632_RS00715 0.79 -0.2 151,964 + tssC LU632_RS00715 0.79 +0.8 151,964 + tssC LU632_RS00715 0.79 -0.1 151,965 - tssC LU632_RS00715 0.79 +0.5 151,965 - tssC LU632_RS00715 0.79 +2.2 151,965 - tssC LU632_RS00715 0.79 +0.2 152,003 + tssC LU632_RS00715 0.81 -1.0 152,031 - tssC LU632_RS00715 0.83 -1.2 152,079 + tssC LU632_RS00715 0.86 -0.5 152,079 + tssC LU632_RS00715 0.86 -2.0 152,080 - tssC LU632_RS00715 0.86 +2.0 152,084 - tssC LU632_RS00715 0.87 +0.8 152,165 - +0.0 152,165 - -0.0 152,165 - -0.7 152,184 + -1.2 152,184 + -2.6 152,243 - -1.2 152,246 + +0.2 152,247 - -1.5 152,278 + -0.7 152,344 + +1.9 152,344 + -0.5 152,345 - -1.8 152,412 - +0.2 152,448 + -0.7 152,554 - LU632_RS00720 0.24 +0.2 152,605 - LU632_RS00720 0.35 -0.7 152,645 + LU632_RS00720 0.43 +1.6 152,645 + LU632_RS00720 0.43 +0.0 152,651 - LU632_RS00720 0.44 +0.8 152,671 - LU632_RS00720 0.48 -2.2 152,893 + +0.7 153,106 - +0.1 153,224 - tssJ LU632_RS00725 0.31 +2.7 153,249 + tssJ LU632_RS00725 0.36 +2.0 153,250 - tssJ LU632_RS00725 0.36 +0.5
Or see this region's nucleotide sequence