Experiment: Experiment:TE2, Cucumber 9 Petiole 1 (TE2-S-C9-P1)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt cbpA and LU632_RS00590 overlap by 19 nucleotides LU632_RS00590 and LU632_RS00595 are separated by 41 nucleotides LU632_RS00595 and LU632_RS00600 are separated by 302 nucleotides
LU632_RS00585: cbpA - curved DNA-binding protein, at 121,126 to 122,061
cbpA
LU632_RS00590: LU632_RS00590 - chaperone-modulator protein CbpM, at 122,043 to 122,342
_RS00590
LU632_RS00595: LU632_RS00595 - hypothetical protein, at 122,384 to 122,719
_RS00595
LU632_RS00600: LU632_RS00600 - SgcJ/EcaC family oxidoreductase, at 123,022 to 123,474
_RS00600
Position (kb) 122
123 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 121.089 kb on + strand at 121.135 kb on - strand at 121.178 kb on - strand at 121.214 kb on + strand at 121.282 kb on - strand, within cbpA at 121.317 kb on + strand, within cbpA at 121.318 kb on - strand, within cbpA at 121.327 kb on + strand, within cbpA at 121.374 kb on + strand, within cbpA at 121.539 kb on - strand, within cbpA at 121.719 kb on + strand, within cbpA at 121.723 kb on + strand, within cbpA at 121.819 kb on - strand, within cbpA at 121.819 kb on - strand, within cbpA at 121.819 kb on - strand, within cbpA at 121.866 kb on - strand, within cbpA at 121.869 kb on + strand, within cbpA at 121.941 kb on + strand, within cbpA at 121.942 kb on - strand, within cbpA at 121.953 kb on + strand, within cbpA at 121.953 kb on + strand, within cbpA at 121.954 kb on - strand, within cbpA at 121.954 kb on - strand, within cbpA at 121.984 kb on - strand at 122.264 kb on + strand, within LU632_RS00590 at 122.558 kb on + strand, within LU632_RS00595 at 122.570 kb on - strand, within LU632_RS00595 at 122.571 kb on + strand, within LU632_RS00595 at 122.572 kb on - strand, within LU632_RS00595 at 122.572 kb on - strand, within LU632_RS00595 at 122.572 kb on - strand, within LU632_RS00595 at 122.631 kb on + strand, within LU632_RS00595 at 122.632 kb on - strand, within LU632_RS00595 at 122.632 kb on - strand, within LU632_RS00595 at 122.632 kb on - strand, within LU632_RS00595 at 122.632 kb on - strand, within LU632_RS00595 at 122.720 kb on - strand at 122.730 kb on + strand at 122.731 kb on - strand at 122.751 kb on + strand at 122.820 kb on - strand at 122.967 kb on + strand at 122.983 kb on - strand at 123.082 kb on - strand, within LU632_RS00600 at 123.088 kb on - strand, within LU632_RS00600 at 123.088 kb on - strand, within LU632_RS00600 at 123.093 kb on + strand, within LU632_RS00600 at 123.093 kb on + strand, within LU632_RS00600 at 123.137 kb on + strand, within LU632_RS00600 at 123.302 kb on + strand, within LU632_RS00600 at 123.336 kb on + strand, within LU632_RS00600
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE2, Cucumber 9 Petiole 1 (TE2-S-C9-P1) remove 121,089 + -1.4 121,135 - -1.4 121,178 - -1.6 121,214 + -3.0 121,282 - cbpA LU632_RS00585 0.17 -1.7 121,317 + cbpA LU632_RS00585 0.20 +0.3 121,318 - cbpA LU632_RS00585 0.21 -0.7 121,327 + cbpA LU632_RS00585 0.21 +0.5 121,374 + cbpA LU632_RS00585 0.26 +0.3 121,539 - cbpA LU632_RS00585 0.44 -0.9 121,719 + cbpA LU632_RS00585 0.63 +0.2 121,723 + cbpA LU632_RS00585 0.64 +1.4 121,819 - cbpA LU632_RS00585 0.74 +1.9 121,819 - cbpA LU632_RS00585 0.74 +0.1 121,819 - cbpA LU632_RS00585 0.74 -1.5 121,866 - cbpA LU632_RS00585 0.79 +4.4 121,869 + cbpA LU632_RS00585 0.79 -0.5 121,941 + cbpA LU632_RS00585 0.87 +0.8 121,942 - cbpA LU632_RS00585 0.87 +0.9 121,953 + cbpA LU632_RS00585 0.88 -0.2 121,953 + cbpA LU632_RS00585 0.88 -0.1 121,954 - cbpA LU632_RS00585 0.88 +2.4 121,954 - cbpA LU632_RS00585 0.88 +0.8 121,984 - -1.5 122,264 + LU632_RS00590 0.74 -1.0 122,558 + LU632_RS00595 0.52 +0.5 122,570 - LU632_RS00595 0.55 +0.8 122,571 + LU632_RS00595 0.56 -2.0 122,572 - LU632_RS00595 0.56 -1.8 122,572 - LU632_RS00595 0.56 +0.1 122,572 - LU632_RS00595 0.56 -0.4 122,631 + LU632_RS00595 0.74 +0.2 122,632 - LU632_RS00595 0.74 +0.1 122,632 - LU632_RS00595 0.74 -0.8 122,632 - LU632_RS00595 0.74 +0.9 122,632 - LU632_RS00595 0.74 +0.8 122,720 - -0.4 122,730 + -0.8 122,731 - +0.7 122,751 + -2.0 122,820 - +1.9 122,967 + +0.5 122,983 - -2.8 123,082 - LU632_RS00600 0.13 -1.6 123,088 - LU632_RS00600 0.15 +4.2 123,088 - LU632_RS00600 0.15 +0.2 123,093 + LU632_RS00600 0.16 -0.8 123,093 + LU632_RS00600 0.16 +3.1 123,137 + LU632_RS00600 0.25 -0.2 123,302 + LU632_RS00600 0.62 +0.4 123,336 + LU632_RS00600 0.69 -1.6
Or see this region's nucleotide sequence