Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS00530

Experiment: Experiment:TE2, Cucumber 9 Petiole 1 (TE2-S-C9-P1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Cucumber 9 Petiole 1 (TE2-S-C9-P1)
108,529	+		LU632_RS00525	0.74	+1.7
108,549	+		LU632_RS00525	0.76	-1.0
108,702	-		LU632_RS00525	0.89	-0.8
108,741	-				-0.8
108,750	-				-2.2
108,912	+				-0.3
109,312	+				-0.9
109,886	+		LU632_RS00530	0.11	+0.4
109,892	+		LU632_RS00530	0.11	-1.2
109,977	-		LU632_RS00530	0.13	-0.2
110,112	-		LU632_RS00530	0.17	+0.8
110,170	-		LU632_RS00530	0.18	-2.2
110,310	-		LU632_RS00530	0.22	-0.2
110,367	+		LU632_RS00530	0.24	+1.9
110,367	+		LU632_RS00530	0.24	-1.2
110,367	+		LU632_RS00530	0.24	+0.5
110,372	-		LU632_RS00530	0.24	+0.6
110,410	+		LU632_RS00530	0.25	+1.2
110,410	+		LU632_RS00530	0.25	+1.6
110,502	-		LU632_RS00530	0.27	-0.5
110,593	+		LU632_RS00530	0.30	-1.7
110,605	+		LU632_RS00530	0.30	+0.8
110,605	+		LU632_RS00530	0.30	-0.1
110,606	-		LU632_RS00530	0.30	-0.2
110,628	-		LU632_RS00530	0.31	-0.9
110,643	-		LU632_RS00530	0.31	+1.1
110,648	+		LU632_RS00530	0.31	+0.3
110,649	-		LU632_RS00530	0.31	-0.2
110,718	+		LU632_RS00530	0.33	-0.2
110,966	+		LU632_RS00530	0.40	+1.2
110,967	-		LU632_RS00530	0.40	+0.2
110,967	-		LU632_RS00530	0.40	-1.9
110,967	-		LU632_RS00530	0.40	+0.8
110,967	-		LU632_RS00530	0.40	-2.4
110,972	+		LU632_RS00530	0.40	+0.2
110,972	+		LU632_RS00530	0.40	-0.8
110,972	+		LU632_RS00530	0.40	+0.6
110,973	-		LU632_RS00530	0.40	-1.4
111,020	+		LU632_RS00530	0.41	+1.8
111,021	-		LU632_RS00530	0.41	-0.5
111,147	-		LU632_RS00530	0.45	+0.3
111,218	+		LU632_RS00530	0.47	-0.4
111,269	+		LU632_RS00530	0.48	-2.4
111,269	+		LU632_RS00530	0.48	-2.2
111,270	-		LU632_RS00530	0.48	+1.6
111,270	-		LU632_RS00530	0.48	-3.0
112,975	+				+1.1
112,976	-				+0.3
112,976	-				+0.4
113,105	-				-0.1
113,124	-				-1.7
113,168	+				-0.9
113,169	-				+1.2
113,169	-				-0.8
113,209	-				+0.0
113,245	+				+0.4
113,246	-				+0.8
113,246	-				-0.5
113,247	+				-1.2
113,247	+				+0.4
113,248	-				-1.0
113,248	-				-0.2
113,248	-				+0.3
113,248	-				+0.6
113,293	-		LU632_RS00535	0.17	+0.9
113,340	-		LU632_RS00535	0.34	-0.8
113,414	-		LU632_RS00535	0.61	+1.3
113,470	-		LU632_RS00535	0.82	-0.6
113,516	-				+0.8
113,525	+				+0.8
113,525	+				-2.4
113,526	-				+1.3
113,604	+				-0.5
113,605	-				-2.9
113,612	-				+2.5
113,677	-				+1.0