Experiment: Experiment:TE2, Cucumber 9 Petiole 1 (TE2-S-C9-P1)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS00380 and LU632_RS00385 are separated by 185 nucleotides LU632_RS00385 and LU632_RS00390 are separated by 154 nucleotides LU632_RS00390 and LU632_RS00395 are separated by 274 nucleotides
LU632_RS00380: LU632_RS00380 - DUF4225 domain-containing protein, at 79,544 to 80,347
_RS00380
LU632_RS00385: LU632_RS00385 - DDE-type integrase/transposase/recombinase, at 80,533 to 80,849
_RS00385
LU632_RS00390: LU632_RS00390 - sugar kinase, at 81,004 to 81,936
_RS00390
LU632_RS00395: LU632_RS00395 - AsmA family protein, at 82,211 to 84,226
_RS00395
Position (kb) 81
82 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5
6 at 80.159 kb on + strand, within LU632_RS00380 at 80.160 kb on - strand, within LU632_RS00380 at 80.192 kb on + strand, within LU632_RS00380 at 80.252 kb on - strand, within LU632_RS00380 at 80.279 kb on + strand at 80.326 kb on + strand at 80.326 kb on + strand at 80.327 kb on - strand at 80.441 kb on + strand at 80.441 kb on + strand at 80.442 kb on - strand at 80.442 kb on - strand at 80.442 kb on - strand at 80.442 kb on - strand at 80.487 kb on - strand at 80.487 kb on - strand at 80.491 kb on - strand at 80.583 kb on + strand, within LU632_RS00385 at 80.905 kb on + strand at 80.906 kb on - strand at 80.906 kb on - strand at 80.921 kb on + strand at 81.031 kb on - strand at 81.125 kb on + strand, within LU632_RS00390 at 81.126 kb on - strand, within LU632_RS00390 at 81.136 kb on - strand, within LU632_RS00390 at 81.159 kb on + strand, within LU632_RS00390 at 81.384 kb on - strand, within LU632_RS00390 at 81.539 kb on + strand, within LU632_RS00390 at 81.539 kb on + strand, within LU632_RS00390 at 81.540 kb on - strand, within LU632_RS00390 at 81.540 kb on - strand, within LU632_RS00390 at 81.540 kb on - strand, within LU632_RS00390 at 81.545 kb on + strand, within LU632_RS00390 at 81.546 kb on - strand, within LU632_RS00390 at 81.552 kb on - strand, within LU632_RS00390 at 81.552 kb on - strand, within LU632_RS00390 at 81.558 kb on + strand, within LU632_RS00390 at 81.559 kb on - strand, within LU632_RS00390 at 81.571 kb on + strand, within LU632_RS00390 at 81.571 kb on + strand, within LU632_RS00390 at 81.671 kb on + strand, within LU632_RS00390 at 81.674 kb on - strand, within LU632_RS00390 at 81.688 kb on - strand, within LU632_RS00390 at 81.900 kb on + strand at 81.900 kb on + strand at 81.921 kb on + strand at 81.978 kb on + strand at 82.148 kb on + strand at 82.225 kb on - strand at 82.225 kb on - strand at 82.260 kb on + strand at 82.261 kb on - strand at 82.261 kb on - strand at 82.416 kb on + strand, within LU632_RS00395 at 82.471 kb on - strand, within LU632_RS00395 at 82.481 kb on + strand, within LU632_RS00395 at 82.481 kb on + strand, within LU632_RS00395 at 82.514 kb on + strand, within LU632_RS00395 at 82.514 kb on + strand, within LU632_RS00395 at 82.515 kb on - strand, within LU632_RS00395 at 82.515 kb on - strand, within LU632_RS00395 at 82.519 kb on - strand, within LU632_RS00395 at 82.581 kb on + strand, within LU632_RS00395 at 82.582 kb on - strand, within LU632_RS00395 at 82.594 kb on - strand, within LU632_RS00395 at 82.659 kb on + strand, within LU632_RS00395 at 82.662 kb on + strand, within LU632_RS00395 at 82.662 kb on + strand, within LU632_RS00395 at 82.662 kb on + strand, within LU632_RS00395 at 82.683 kb on + strand, within LU632_RS00395 at 82.684 kb on - strand, within LU632_RS00395
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE2, Cucumber 9 Petiole 1 (TE2-S-C9-P1) remove 80,159 + LU632_RS00380 0.76 +2.3 80,160 - LU632_RS00380 0.77 -2.0 80,192 + LU632_RS00380 0.81 -0.0 80,252 - LU632_RS00380 0.88 -2.6 80,279 + -0.8 80,326 + +2.4 80,326 + -0.2 80,327 - +0.8 80,441 + +0.3 80,441 + -2.9 80,442 - +2.5 80,442 - -0.2 80,442 - -1.6 80,442 - +1.0 80,487 - -0.9 80,487 - -1.2 80,491 - +0.6 80,583 + LU632_RS00385 0.16 -0.8 80,905 + +2.1 80,906 - +0.5 80,906 - -1.1 80,921 + -0.4 81,031 - +0.5 81,125 + LU632_RS00390 0.13 -0.8 81,126 - LU632_RS00390 0.13 +5.9 81,136 - LU632_RS00390 0.14 -0.4 81,159 + LU632_RS00390 0.17 -1.3 81,384 - LU632_RS00390 0.41 -1.6 81,539 + LU632_RS00390 0.57 +4.7 81,539 + LU632_RS00390 0.57 +1.3 81,540 - LU632_RS00390 0.57 +0.1 81,540 - LU632_RS00390 0.57 +1.0 81,540 - LU632_RS00390 0.57 +0.4 81,545 + LU632_RS00390 0.58 +0.6 81,546 - LU632_RS00390 0.58 +3.8 81,552 - LU632_RS00390 0.59 -0.4 81,552 - LU632_RS00390 0.59 -1.2 81,558 + LU632_RS00390 0.59 +0.4 81,559 - LU632_RS00390 0.59 -0.2 81,571 + LU632_RS00390 0.61 -0.3 81,571 + LU632_RS00390 0.61 -0.4 81,671 + LU632_RS00390 0.71 -1.8 81,674 - LU632_RS00390 0.72 -1.8 81,688 - LU632_RS00390 0.73 -1.2 81,900 + +0.9 81,900 + -2.8 81,921 + +1.1 81,978 + +1.5 82,148 + -0.8 82,225 - +0.9 82,225 - +2.3 82,260 + +0.5 82,261 - +1.2 82,261 - -1.9 82,416 + LU632_RS00395 0.10 +1.6 82,471 - LU632_RS00395 0.13 -0.2 82,481 + LU632_RS00395 0.13 +2.3 82,481 + LU632_RS00395 0.13 -0.8 82,514 + LU632_RS00395 0.15 -2.2 82,514 + LU632_RS00395 0.15 +1.5 82,515 - LU632_RS00395 0.15 +1.6 82,515 - LU632_RS00395 0.15 -1.0 82,519 - LU632_RS00395 0.15 -2.7 82,581 + LU632_RS00395 0.18 -1.6 82,582 - LU632_RS00395 0.18 +2.2 82,594 - LU632_RS00395 0.19 +1.9 82,659 + LU632_RS00395 0.22 -0.0 82,662 + LU632_RS00395 0.22 -2.0 82,662 + LU632_RS00395 0.22 -1.8 82,662 + LU632_RS00395 0.22 +0.9 82,683 + LU632_RS00395 0.23 +1.6 82,684 - LU632_RS00395 0.23 +0.3
Or see this region's nucleotide sequence