Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS00255

Experiment: Experiment:TE2, Cucumber 9 Petiole 1 (TE2-S-C9-P1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Cucumber 9 Petiole 1 (TE2-S-C9-P1)
49,087	+	cirA	LU632_RS00250	0.55	-1.2
49,087	+	cirA	LU632_RS00250	0.55	+0.8
49,087	+	cirA	LU632_RS00250	0.55	+2.1
49,087	+	cirA	LU632_RS00250	0.55	+0.4
49,126	-	cirA	LU632_RS00250	0.57	-0.0
49,154	+	cirA	LU632_RS00250	0.58	+0.0
49,355	+	cirA	LU632_RS00250	0.69	-0.8
49,484	-	cirA	LU632_RS00250	0.75	-1.6
49,544	+	cirA	LU632_RS00250	0.78	-2.7
49,552	+	cirA	LU632_RS00250	0.79	+1.5
49,654	+	cirA	LU632_RS00250	0.84	-1.6
49,951	+				+0.3
49,988	-				-0.3
50,019	-				+2.7
50,065	-				+4.1
50,067	-				-1.9
50,067	-				+0.8
50,154	+		LU632_RS00255	0.12	-0.8
50,154	+		LU632_RS00255	0.12	-0.8
50,154	+		LU632_RS00255	0.12	+1.3
50,155	-		LU632_RS00255	0.12	-1.6
50,155	-		LU632_RS00255	0.12	-0.0
50,171	+		LU632_RS00255	0.13	-1.9
50,172	-		LU632_RS00255	0.13	-0.9
50,175	+		LU632_RS00255	0.14	-0.6
50,605	-		LU632_RS00255	0.51	-0.6
50,607	-		LU632_RS00255	0.51	-3.5
50,607	-		LU632_RS00255	0.51	+1.4
50,686	-		LU632_RS00255	0.58	-1.9
50,771	-		LU632_RS00255	0.65	-0.6
50,771	-		LU632_RS00255	0.65	+0.3
50,864	-		LU632_RS00255	0.74	-1.6
50,981	+		LU632_RS00255	0.84	-1.7
51,009	+		LU632_RS00255	0.86	+1.0
51,019	-		LU632_RS00255	0.87	+1.8
51,085	+				-0.7
51,086	-				-1.4
51,098	-				+0.6
51,213	-				-0.0
51,258	+				+2.6
51,259	-				+1.0
51,345	-				-0.9
51,348	+				+0.6
51,355	+				-1.6
51,398	+				-0.8
51,399	-				+0.8
51,416	-				-1.8
51,459	+				-1.8
51,595	+				-0.0
51,653	+				-0.1
51,687	+				-2.8
51,702	-				+1.1
51,762	+				+0.8
51,762	+				+1.2
51,762	+				+1.2
51,762	+				+1.3
51,815	-		LU632_RS00260	0.19	-1.1
51,864	+		LU632_RS00260	0.34	-0.7
51,869	+		LU632_RS00260	0.35	-0.7
51,869	+		LU632_RS00260	0.35	-2.4
51,870	-		LU632_RS00260	0.35	+1.0
51,870	-		LU632_RS00260	0.35	-2.3
51,871	+		LU632_RS00260	0.36	-1.6
51,871	+		LU632_RS00260	0.36	+3.9
51,872	-		LU632_RS00260	0.36	-1.2
51,872	-		LU632_RS00260	0.36	+0.4
51,929	+		LU632_RS00260	0.53	-0.3
51,934	+		LU632_RS00260	0.54	-1.2
51,935	-		LU632_RS00260	0.54	-4.0
51,935	-		LU632_RS00260	0.54	-0.4
51,935	-		LU632_RS00260	0.54	+1.3
52,056	+				+3.8
52,063	-				+0.4
52,162	-				-0.6
52,162	-				-0.6