Strain Fitness in Bacteroides stercoris CC31F around HMPREF1181_RS03355

Experiment: D-Maltose 10 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1181_RS03350 and HMPREF1181_RS03355 are separated by 31 nucleotidesHMPREF1181_RS03355 and HMPREF1181_RS17225 are separated by 300 nucleotidesHMPREF1181_RS17225 and HMPREF1181_RS03360 are separated by 115 nucleotides HMPREF1181_RS03350: HMPREF1181_RS03350 - haloacid dehalogenase-like hydrolase, at 852,952 to 853,929 _RS03350 HMPREF1181_RS03355: HMPREF1181_RS03355 - MFS transporter, at 853,961 to 855,250 _RS03355 HMPREF1181_RS17225: HMPREF1181_RS17225 - IS5/IS1182 family transposase, at 855,551 to 855,754 _RS17225 HMPREF1181_RS03360: HMPREF1181_RS03360 - OmpH family outer membrane protein, at 855,870 to 856,376 _RS03360 Position (kb) 853 854 855 856Strain fitness (log2 ratio) -1 0 1at 853.218 kb on + strand, within HMPREF1181_RS03350at 853.219 kb on - strand, within HMPREF1181_RS03350at 853.231 kb on + strand, within HMPREF1181_RS03350at 853.232 kb on - strand, within HMPREF1181_RS03350at 853.232 kb on - strand, within HMPREF1181_RS03350at 853.266 kb on + strand, within HMPREF1181_RS03350at 853.270 kb on + strand, within HMPREF1181_RS03350at 853.271 kb on - strand, within HMPREF1181_RS03350at 853.386 kb on + strand, within HMPREF1181_RS03350at 853.386 kb on + strand, within HMPREF1181_RS03350at 853.386 kb on + strand, within HMPREF1181_RS03350at 853.387 kb on - strand, within HMPREF1181_RS03350at 853.410 kb on - strand, within HMPREF1181_RS03350at 853.423 kb on - strand, within HMPREF1181_RS03350at 853.484 kb on + strand, within HMPREF1181_RS03350at 853.516 kb on - strand, within HMPREF1181_RS03350at 853.544 kb on - strand, within HMPREF1181_RS03350at 853.544 kb on - strand, within HMPREF1181_RS03350at 853.564 kb on - strand, within HMPREF1181_RS03350at 853.577 kb on - strand, within HMPREF1181_RS03350at 853.592 kb on - strand, within HMPREF1181_RS03350at 853.592 kb on - strand, within HMPREF1181_RS03350at 853.626 kb on + strand, within HMPREF1181_RS03350at 853.627 kb on - strand, within HMPREF1181_RS03350at 853.677 kb on - strand, within HMPREF1181_RS03350at 853.677 kb on - strand, within HMPREF1181_RS03350at 853.723 kb on + strand, within HMPREF1181_RS03350at 853.735 kb on - strand, within HMPREF1181_RS03350at 853.807 kb on - strand, within HMPREF1181_RS03350at 853.812 kb on - strand, within HMPREF1181_RS03350at 853.833 kb on + strandat 853.834 kb on - strandat 853.858 kb on + strandat 853.859 kb on - strandat 853.860 kb on + strandat 853.864 kb on + strandat 853.879 kb on - strandat 853.941 kb on + strandat 853.941 kb on + strandat 853.942 kb on - strandat 855.840 kb on + strandat 855.841 kb on - strandat 855.872 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Maltose 10 mM (C)
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853,218 + HMPREF1181_RS03350 0.27 -0.1
853,219 - HMPREF1181_RS03350 0.27 -0.0
853,231 + HMPREF1181_RS03350 0.29 +0.2
853,232 - HMPREF1181_RS03350 0.29 -0.6
853,232 - HMPREF1181_RS03350 0.29 -0.2
853,266 + HMPREF1181_RS03350 0.32 +0.0
853,270 + HMPREF1181_RS03350 0.33 -0.5
853,271 - HMPREF1181_RS03350 0.33 -0.8
853,386 + HMPREF1181_RS03350 0.44 -0.5
853,386 + HMPREF1181_RS03350 0.44 -0.2
853,386 + HMPREF1181_RS03350 0.44 -0.1
853,387 - HMPREF1181_RS03350 0.44 +0.8
853,410 - HMPREF1181_RS03350 0.47 +0.2
853,423 - HMPREF1181_RS03350 0.48 -0.3
853,484 + HMPREF1181_RS03350 0.54 +1.1
853,516 - HMPREF1181_RS03350 0.58 +0.3
853,544 - HMPREF1181_RS03350 0.61 +0.2
853,544 - HMPREF1181_RS03350 0.61 +0.2
853,564 - HMPREF1181_RS03350 0.63 -0.0
853,577 - HMPREF1181_RS03350 0.64 +1.0
853,592 - HMPREF1181_RS03350 0.65 +0.2
853,592 - HMPREF1181_RS03350 0.65 -0.1
853,626 + HMPREF1181_RS03350 0.69 -0.5
853,627 - HMPREF1181_RS03350 0.69 -0.5
853,677 - HMPREF1181_RS03350 0.74 +0.3
853,677 - HMPREF1181_RS03350 0.74 -0.3
853,723 + HMPREF1181_RS03350 0.79 +0.5
853,735 - HMPREF1181_RS03350 0.80 +0.1
853,807 - HMPREF1181_RS03350 0.87 -0.8
853,812 - HMPREF1181_RS03350 0.88 -0.6
853,833 + -0.1
853,834 - +0.5
853,858 + -0.5
853,859 - +0.2
853,860 + +0.3
853,864 + -0.3
853,879 - -0.1
853,941 + +0.3
853,941 + +0.1
853,942 - -0.1
855,840 + +0.7
855,841 - +0.1
855,872 - +0.7

Or see this region's nucleotide sequence