Strain Fitness in Escherichia coli HS(pFamp)R (ATCC 700891) around OHPLBJKB_04440

Experiment: Control_HSF

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntOHPLBJKB_04438 and OHPLBJKB_04439 are separated by 1 nucleotidesOHPLBJKB_04439 and OHPLBJKB_04440 are separated by 579 nucleotidesOHPLBJKB_04440 and OHPLBJKB_04441 are separated by 1 nucleotides OHPLBJKB_04438: OHPLBJKB_04438 - Toxin CcdB, at 87,242 to 87,547 _04438 OHPLBJKB_04439: OHPLBJKB_04439 - Antitoxin CcdA, at 87,549 to 87,767 _04439 OHPLBJKB_04440: OHPLBJKB_04440 - Transcriptional repressor PifC, at 88,347 to 89,435 _04440 OHPLBJKB_04441: OHPLBJKB_04441 - hypothetical protein, at 89,437 to 91,662 _04441 Position (kb) 88 89 90Strain fitness (log2 ratio) -2 -1 0 1 2 3at 87.415 kb on + strand, within OHPLBJKB_04438at 87.415 kb on + strand, within OHPLBJKB_04438at 87.475 kb on + strand, within OHPLBJKB_04438at 87.488 kb on + strand, within OHPLBJKB_04438at 87.488 kb on + strand, within OHPLBJKB_04438at 87.488 kb on + strand, within OHPLBJKB_04438at 87.489 kb on - strand, within OHPLBJKB_04438at 87.489 kb on - strand, within OHPLBJKB_04438at 87.489 kb on - strand, within OHPLBJKB_04438at 87.489 kb on - strand, within OHPLBJKB_04438at 87.523 kb on + strandat 87.523 kb on + strandat 87.524 kb on - strandat 87.524 kb on - strandat 87.524 kb on - strandat 87.525 kb on + strandat 87.531 kb on + strandat 87.531 kb on + strandat 87.532 kb on - strandat 87.799 kb on - strandat 87.799 kb on - strandat 87.799 kb on - strandat 87.809 kb on - strandat 87.812 kb on + strandat 87.812 kb on + strandat 87.813 kb on - strandat 87.849 kb on + strandat 87.876 kb on + strandat 87.876 kb on + strandat 87.928 kb on + strandat 87.977 kb on + strandat 88.083 kb on + strandat 88.083 kb on + strandat 88.135 kb on + strandat 88.136 kb on - strandat 88.136 kb on - strandat 88.136 kb on - strandat 88.195 kb on + strandat 88.196 kb on - strandat 88.217 kb on + strandat 88.217 kb on + strandat 88.217 kb on + strandat 88.217 kb on + strandat 88.218 kb on - strandat 88.218 kb on - strandat 88.218 kb on - strandat 88.292 kb on - strandat 88.492 kb on - strand, within OHPLBJKB_04440at 88.640 kb on + strand, within OHPLBJKB_04440at 88.641 kb on - strand, within OHPLBJKB_04440at 88.641 kb on - strand, within OHPLBJKB_04440at 88.644 kb on - strand, within OHPLBJKB_04440at 88.644 kb on - strand, within OHPLBJKB_04440at 88.740 kb on + strand, within OHPLBJKB_04440at 88.833 kb on + strand, within OHPLBJKB_04440at 88.833 kb on + strand, within OHPLBJKB_04440at 88.833 kb on + strand, within OHPLBJKB_04440at 88.833 kb on + strand, within OHPLBJKB_04440at 88.833 kb on + strand, within OHPLBJKB_04440at 88.834 kb on - strand, within OHPLBJKB_04440at 89.110 kb on - strand, within OHPLBJKB_04440at 89.208 kb on + strand, within OHPLBJKB_04440at 89.208 kb on + strand, within OHPLBJKB_04440at 89.422 kb on - strandat 89.422 kb on - strandat 89.433 kb on + strandat 89.433 kb on + strandat 89.434 kb on - strandat 89.434 kb on - strandat 89.436 kb on + strandat 89.436 kb on + strandat 89.444 kb on + strandat 89.495 kb on + strandat 89.495 kb on + strandat 89.495 kb on + strandat 89.523 kb on + strandat 89.524 kb on - strandat 89.535 kb on + strandat 89.535 kb on + strandat 89.535 kb on + strandat 89.535 kb on + strandat 89.536 kb on - strandat 89.536 kb on - strandat 89.537 kb on + strandat 89.553 kb on + strandat 89.554 kb on - strandat 89.589 kb on - strandat 89.589 kb on - strandat 89.682 kb on + strand, within OHPLBJKB_04441at 89.682 kb on + strand, within OHPLBJKB_04441at 89.683 kb on - strand, within OHPLBJKB_04441at 89.683 kb on - strand, within OHPLBJKB_04441at 89.765 kb on + strand, within OHPLBJKB_04441at 89.765 kb on + strand, within OHPLBJKB_04441at 89.765 kb on + strand, within OHPLBJKB_04441at 89.766 kb on - strand, within OHPLBJKB_04441at 89.766 kb on - strand, within OHPLBJKB_04441at 89.766 kb on - strand, within OHPLBJKB_04441at 89.766 kb on - strand, within OHPLBJKB_04441at 89.802 kb on + strand, within OHPLBJKB_04441at 89.803 kb on - strand, within OHPLBJKB_04441at 89.806 kb on + strand, within OHPLBJKB_04441at 89.807 kb on - strand, within OHPLBJKB_04441at 89.807 kb on - strand, within OHPLBJKB_04441at 89.807 kb on - strand, within OHPLBJKB_04441at 89.807 kb on - strand, within OHPLBJKB_04441at 89.807 kb on - strand, within OHPLBJKB_04441at 89.807 kb on - strand, within OHPLBJKB_04441at 89.843 kb on - strand, within OHPLBJKB_04441at 89.843 kb on - strand, within OHPLBJKB_04441at 89.853 kb on + strand, within OHPLBJKB_04441at 89.884 kb on + strand, within OHPLBJKB_04441at 89.884 kb on + strand, within OHPLBJKB_04441at 89.884 kb on + strand, within OHPLBJKB_04441at 89.885 kb on - strand, within OHPLBJKB_04441at 89.885 kb on - strand, within OHPLBJKB_04441at 89.885 kb on - strand, within OHPLBJKB_04441at 89.885 kb on - strand, within OHPLBJKB_04441at 89.908 kb on - strand, within OHPLBJKB_04441at 89.910 kb on + strand, within OHPLBJKB_04441at 89.918 kb on + strand, within OHPLBJKB_04441at 89.918 kb on + strand, within OHPLBJKB_04441at 89.930 kb on + strand, within OHPLBJKB_04441at 89.931 kb on - strand, within OHPLBJKB_04441at 90.129 kb on + strand, within OHPLBJKB_04441at 90.140 kb on - strand, within OHPLBJKB_04441at 90.154 kb on - strand, within OHPLBJKB_04441at 90.293 kb on + strand, within OHPLBJKB_04441at 90.293 kb on + strand, within OHPLBJKB_04441at 90.294 kb on - strand, within OHPLBJKB_04441at 90.296 kb on - strand, within OHPLBJKB_04441at 90.306 kb on + strand, within OHPLBJKB_04441at 90.360 kb on + strand, within OHPLBJKB_04441at 90.364 kb on + strand, within OHPLBJKB_04441at 90.364 kb on + strand, within OHPLBJKB_04441at 90.364 kb on + strand, within OHPLBJKB_04441at 90.365 kb on - strand, within OHPLBJKB_04441at 90.365 kb on - strand, within OHPLBJKB_04441at 90.365 kb on - strand, within OHPLBJKB_04441at 90.365 kb on - strand, within OHPLBJKB_04441at 90.365 kb on - strand, within OHPLBJKB_04441at 90.409 kb on - strand, within OHPLBJKB_04441at 90.409 kb on - strand, within OHPLBJKB_04441

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Control_HSF
remove
87,415 + OHPLBJKB_04438 0.57 +1.9
87,415 + OHPLBJKB_04438 0.57 -1.4
87,475 + OHPLBJKB_04438 0.76 +0.9
87,488 + OHPLBJKB_04438 0.80 -1.4
87,488 + OHPLBJKB_04438 0.80 +1.5
87,488 + OHPLBJKB_04438 0.80 -0.7
87,489 - OHPLBJKB_04438 0.81 +0.9
87,489 - OHPLBJKB_04438 0.81 -0.1
87,489 - OHPLBJKB_04438 0.81 +0.2
87,489 - OHPLBJKB_04438 0.81 -1.4
87,523 + +0.1
87,523 + -0.1
87,524 - +1.9
87,524 - +0.9
87,524 - -2.1
87,525 + +0.9
87,531 + +0.9
87,531 + +0.4
87,532 - +1.3
87,799 - -0.1
87,799 - -0.3
87,799 - +2.5
87,809 - -0.1
87,812 + -0.4
87,812 + +1.2
87,813 - -0.1
87,849 + +0.9
87,876 + +2.9
87,876 + +0.3
87,928 + +0.9
87,977 + -0.1
88,083 + -1.1
88,083 + -0.4
88,135 + -0.1
88,136 - -0.1
88,136 - -0.8
88,136 - -1.4
88,195 + +0.3
88,196 - +0.3
88,217 + +0.5
88,217 + +0.9
88,217 + -1.1
88,217 + +0.3
88,218 - +1.9
88,218 - -0.5
88,218 - +0.9
88,292 - +1.9
88,492 - OHPLBJKB_04440 0.13 -1.7
88,640 + OHPLBJKB_04440 0.27 -0.4
88,641 - OHPLBJKB_04440 0.27 +0.3
88,641 - OHPLBJKB_04440 0.27 -1.1
88,644 - OHPLBJKB_04440 0.27 -0.7
88,644 - OHPLBJKB_04440 0.27 +0.3
88,740 + OHPLBJKB_04440 0.36 +0.4
88,833 + OHPLBJKB_04440 0.45 -0.4
88,833 + OHPLBJKB_04440 0.45 -1.1
88,833 + OHPLBJKB_04440 0.45 -0.3
88,833 + OHPLBJKB_04440 0.45 -1.1
88,833 + OHPLBJKB_04440 0.45 -1.4
88,834 - OHPLBJKB_04440 0.45 +0.3
89,110 - OHPLBJKB_04440 0.70 +1.9
89,208 + OHPLBJKB_04440 0.79 +2.5
89,208 + OHPLBJKB_04440 0.79 -0.3
89,422 - -1.3
89,422 - -1.9
89,433 + +0.2
89,433 + -0.1
89,434 - +1.6
89,434 - +2.5
89,436 + -0.3
89,436 + +1.5
89,444 + +1.1
89,495 + -1.7
89,495 + -0.7
89,495 + +0.3
89,523 + -0.7
89,524 - +0.3
89,535 + -0.9
89,535 + +1.9
89,535 + +0.2
89,535 + -1.1
89,536 - -0.1
89,536 - -0.6
89,537 + +0.1
89,553 + +0.1
89,554 - +2.5
89,589 - +0.4
89,589 - +0.3
89,682 + OHPLBJKB_04441 0.11 +0.9
89,682 + OHPLBJKB_04441 0.11 -0.7
89,683 - OHPLBJKB_04441 0.11 -0.1
89,683 - OHPLBJKB_04441 0.11 +0.9
89,765 + OHPLBJKB_04441 0.15 -0.7
89,765 + OHPLBJKB_04441 0.15 -1.9
89,765 + OHPLBJKB_04441 0.15 +1.5
89,766 - OHPLBJKB_04441 0.15 +1.9
89,766 - OHPLBJKB_04441 0.15 -0.3
89,766 - OHPLBJKB_04441 0.15 +2.1
89,766 - OHPLBJKB_04441 0.15 +0.4
89,802 + OHPLBJKB_04441 0.16 +1.2
89,803 - OHPLBJKB_04441 0.16 -0.7
89,806 + OHPLBJKB_04441 0.17 +0.9
89,807 - OHPLBJKB_04441 0.17 -0.8
89,807 - OHPLBJKB_04441 0.17 -0.7
89,807 - OHPLBJKB_04441 0.17 +2.5
89,807 - OHPLBJKB_04441 0.17 -0.7
89,807 - OHPLBJKB_04441 0.17 -0.7
89,807 - OHPLBJKB_04441 0.17 +0.3
89,843 - OHPLBJKB_04441 0.18 +0.2
89,843 - OHPLBJKB_04441 0.18 -0.1
89,853 + OHPLBJKB_04441 0.19 +0.0
89,884 + OHPLBJKB_04441 0.20 -0.1
89,884 + OHPLBJKB_04441 0.20 -0.8
89,884 + OHPLBJKB_04441 0.20 +0.3
89,885 - OHPLBJKB_04441 0.20 +1.5
89,885 - OHPLBJKB_04441 0.20 +1.9
89,885 - OHPLBJKB_04441 0.20 +0.3
89,885 - OHPLBJKB_04441 0.20 -0.4
89,908 - OHPLBJKB_04441 0.21 +1.9
89,910 + OHPLBJKB_04441 0.21 +0.9
89,918 + OHPLBJKB_04441 0.22 -1.9
89,918 + OHPLBJKB_04441 0.22 -0.1
89,930 + OHPLBJKB_04441 0.22 +0.3
89,931 - OHPLBJKB_04441 0.22 +1.9
90,129 + OHPLBJKB_04441 0.31 +0.9
90,140 - OHPLBJKB_04441 0.32 +1.6
90,154 - OHPLBJKB_04441 0.32 -1.4
90,293 + OHPLBJKB_04441 0.38 +1.9
90,293 + OHPLBJKB_04441 0.38 -0.4
90,294 - OHPLBJKB_04441 0.38 +1.2
90,296 - OHPLBJKB_04441 0.39 +0.9
90,306 + OHPLBJKB_04441 0.39 +0.9
90,360 + OHPLBJKB_04441 0.41 -0.1
90,364 + OHPLBJKB_04441 0.42 +0.9
90,364 + OHPLBJKB_04441 0.42 +1.5
90,364 + OHPLBJKB_04441 0.42 +1.3
90,365 - OHPLBJKB_04441 0.42 +0.9
90,365 - OHPLBJKB_04441 0.42 -0.1
90,365 - OHPLBJKB_04441 0.42 -0.1
90,365 - OHPLBJKB_04441 0.42 +0.9
90,365 - OHPLBJKB_04441 0.42 +3.1
90,409 - OHPLBJKB_04441 0.44 -0.7
90,409 - OHPLBJKB_04441 0.44 +0.3

Or see this region's nucleotide sequence