Strain Fitness in Escherichia coli HS(pFamp)R (ATCC 700891) around OHPLBJKB_04429

Experiment: Control_HSF

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOHPLBJKB_04427 and OHPLBJKB_04428 overlap by 1 nucleotidesOHPLBJKB_04428 and OHPLBJKB_04429 are separated by 45 nucleotidesOHPLBJKB_04429 and OHPLBJKB_04430 are separated by 13 nucleotidesOHPLBJKB_04430 and OHPLBJKB_04431 are separated by 0 nucleotides OHPLBJKB_04427: OHPLBJKB_04427 - hypothetical protein, at 77,602 to 77,766 _04427 OHPLBJKB_04428: OHPLBJKB_04428 - hypothetical protein, at 77,766 to 78,542 _04428 OHPLBJKB_04429: OHPLBJKB_04429 - hypothetical protein, at 78,588 to 79,022 _04429 OHPLBJKB_04430: OHPLBJKB_04430 - hypothetical protein, at 79,036 to 79,257 _04430 OHPLBJKB_04431: OHPLBJKB_04431 - DNA adenine methyltransferase YhdJ, at 79,258 to 79,941 _04431 Position (kb) 78 79 80Strain fitness (log2 ratio) -2 -1 0 1 2at 77.648 kb on + strand, within OHPLBJKB_04427at 77.648 kb on + strand, within OHPLBJKB_04427at 77.648 kb on + strand, within OHPLBJKB_04427at 77.882 kb on + strand, within OHPLBJKB_04428at 77.882 kb on + strand, within OHPLBJKB_04428at 77.918 kb on + strand, within OHPLBJKB_04428at 77.918 kb on + strand, within OHPLBJKB_04428at 77.919 kb on - strand, within OHPLBJKB_04428at 77.919 kb on - strand, within OHPLBJKB_04428at 77.927 kb on + strand, within OHPLBJKB_04428at 77.928 kb on - strand, within OHPLBJKB_04428at 77.944 kb on + strand, within OHPLBJKB_04428at 77.944 kb on + strand, within OHPLBJKB_04428at 77.944 kb on + strand, within OHPLBJKB_04428at 77.945 kb on - strand, within OHPLBJKB_04428at 78.087 kb on + strand, within OHPLBJKB_04428at 78.131 kb on + strand, within OHPLBJKB_04428at 78.132 kb on - strand, within OHPLBJKB_04428at 78.187 kb on - strand, within OHPLBJKB_04428at 78.187 kb on - strand, within OHPLBJKB_04428at 78.412 kb on + strand, within OHPLBJKB_04428at 78.412 kb on + strand, within OHPLBJKB_04428at 78.412 kb on + strand, within OHPLBJKB_04428at 78.412 kb on + strand, within OHPLBJKB_04428at 78.413 kb on - strand, within OHPLBJKB_04428at 78.413 kb on - strand, within OHPLBJKB_04428at 78.413 kb on - strand, within OHPLBJKB_04428at 78.903 kb on - strand, within OHPLBJKB_04429at 78.947 kb on + strand, within OHPLBJKB_04429at 78.965 kb on + strand, within OHPLBJKB_04429at 78.965 kb on + strand, within OHPLBJKB_04429at 78.965 kb on + strand, within OHPLBJKB_04429at 78.965 kb on + strand, within OHPLBJKB_04429at 78.965 kb on + strand, within OHPLBJKB_04429at 78.965 kb on + strand, within OHPLBJKB_04429at 78.965 kb on + strand, within OHPLBJKB_04429at 78.965 kb on + strand, within OHPLBJKB_04429at 78.999 kb on + strandat 79.000 kb on - strandat 79.019 kb on - strandat 79.019 kb on - strandat 79.045 kb on - strandat 79.076 kb on + strand, within OHPLBJKB_04430at 79.076 kb on + strand, within OHPLBJKB_04430at 79.076 kb on + strand, within OHPLBJKB_04430at 79.077 kb on - strand, within OHPLBJKB_04430at 79.077 kb on - strand, within OHPLBJKB_04430at 79.077 kb on - strand, within OHPLBJKB_04430at 79.077 kb on - strand, within OHPLBJKB_04430at 79.250 kb on + strandat 79.251 kb on - strandat 79.260 kb on - strandat 79.276 kb on - strandat 79.379 kb on + strand, within OHPLBJKB_04431at 79.380 kb on - strand, within OHPLBJKB_04431at 79.595 kb on + strand, within OHPLBJKB_04431at 79.595 kb on + strand, within OHPLBJKB_04431at 79.595 kb on + strand, within OHPLBJKB_04431at 79.595 kb on + strand, within OHPLBJKB_04431at 79.595 kb on + strand, within OHPLBJKB_04431at 79.596 kb on - strand, within OHPLBJKB_04431at 79.596 kb on - strand, within OHPLBJKB_04431at 79.596 kb on - strand, within OHPLBJKB_04431at 79.596 kb on - strand, within OHPLBJKB_04431at 79.622 kb on + strand, within OHPLBJKB_04431at 79.622 kb on + strand, within OHPLBJKB_04431at 79.622 kb on + strand, within OHPLBJKB_04431at 79.622 kb on + strand, within OHPLBJKB_04431at 79.622 kb on + strand, within OHPLBJKB_04431at 79.622 kb on + strand, within OHPLBJKB_04431at 79.640 kb on + strand, within OHPLBJKB_04431at 79.640 kb on + strand, within OHPLBJKB_04431at 79.640 kb on + strand, within OHPLBJKB_04431at 79.651 kb on - strand, within OHPLBJKB_04431at 79.728 kb on - strand, within OHPLBJKB_04431at 79.767 kb on - strand, within OHPLBJKB_04431at 79.767 kb on - strand, within OHPLBJKB_04431at 79.776 kb on + strand, within OHPLBJKB_04431at 79.822 kb on - strand, within OHPLBJKB_04431at 79.854 kb on - strand, within OHPLBJKB_04431at 79.929 kb on + strandat 79.941 kb on + strandat 79.941 kb on + strandat 79.941 kb on + strandat 79.942 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Control_HSF
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77,648 + OHPLBJKB_04427 0.28 -0.7
77,648 + OHPLBJKB_04427 0.28 -1.4
77,648 + OHPLBJKB_04427 0.28 -0.3
77,882 + OHPLBJKB_04428 0.15 -0.4
77,882 + OHPLBJKB_04428 0.15 +1.3
77,918 + OHPLBJKB_04428 0.20 -0.3
77,918 + OHPLBJKB_04428 0.20 -0.1
77,919 - OHPLBJKB_04428 0.20 +1.9
77,919 - OHPLBJKB_04428 0.20 -0.7
77,927 + OHPLBJKB_04428 0.21 -1.1
77,928 - OHPLBJKB_04428 0.21 -0.3
77,944 + OHPLBJKB_04428 0.23 -0.9
77,944 + OHPLBJKB_04428 0.23 +1.5
77,944 + OHPLBJKB_04428 0.23 +1.6
77,945 - OHPLBJKB_04428 0.23 +1.5
78,087 + OHPLBJKB_04428 0.41 +0.3
78,131 + OHPLBJKB_04428 0.47 -0.7
78,132 - OHPLBJKB_04428 0.47 -0.1
78,187 - OHPLBJKB_04428 0.54 -0.4
78,187 - OHPLBJKB_04428 0.54 +0.4
78,412 + OHPLBJKB_04428 0.83 +0.4
78,412 + OHPLBJKB_04428 0.83 -0.7
78,412 + OHPLBJKB_04428 0.83 -0.1
78,412 + OHPLBJKB_04428 0.83 -1.3
78,413 - OHPLBJKB_04428 0.83 +0.3
78,413 - OHPLBJKB_04428 0.83 +0.5
78,413 - OHPLBJKB_04428 0.83 -1.4
78,903 - OHPLBJKB_04429 0.72 +0.2
78,947 + OHPLBJKB_04429 0.83 +0.5
78,965 + OHPLBJKB_04429 0.87 +1.5
78,965 + OHPLBJKB_04429 0.87 -1.9
78,965 + OHPLBJKB_04429 0.87 -0.4
78,965 + OHPLBJKB_04429 0.87 -0.7
78,965 + OHPLBJKB_04429 0.87 +1.9
78,965 + OHPLBJKB_04429 0.87 -1.8
78,965 + OHPLBJKB_04429 0.87 -1.1
78,965 + OHPLBJKB_04429 0.87 -0.1
78,999 + -0.7
79,000 - -0.1
79,019 - +1.5
79,019 - -0.3
79,045 - -0.9
79,076 + OHPLBJKB_04430 0.18 +1.3
79,076 + OHPLBJKB_04430 0.18 +0.3
79,076 + OHPLBJKB_04430 0.18 +0.9
79,077 - OHPLBJKB_04430 0.18 +0.3
79,077 - OHPLBJKB_04430 0.18 -1.4
79,077 - OHPLBJKB_04430 0.18 +1.2
79,077 - OHPLBJKB_04430 0.18 +0.9
79,250 + -1.4
79,251 - -0.1
79,260 - +0.9
79,276 - +0.2
79,379 + OHPLBJKB_04431 0.18 +0.7
79,380 - OHPLBJKB_04431 0.18 +1.9
79,595 + OHPLBJKB_04431 0.49 -1.1
79,595 + OHPLBJKB_04431 0.49 -1.1
79,595 + OHPLBJKB_04431 0.49 +0.2
79,595 + OHPLBJKB_04431 0.49 +1.3
79,595 + OHPLBJKB_04431 0.49 -1.1
79,596 - OHPLBJKB_04431 0.49 +0.9
79,596 - OHPLBJKB_04431 0.49 +2.5
79,596 - OHPLBJKB_04431 0.49 +1.6
79,596 - OHPLBJKB_04431 0.49 -0.6
79,622 + OHPLBJKB_04431 0.53 -0.1
79,622 + OHPLBJKB_04431 0.53 -0.1
79,622 + OHPLBJKB_04431 0.53 -1.1
79,622 + OHPLBJKB_04431 0.53 +0.9
79,622 + OHPLBJKB_04431 0.53 -1.1
79,622 + OHPLBJKB_04431 0.53 +1.9
79,640 + OHPLBJKB_04431 0.56 +0.9
79,640 + OHPLBJKB_04431 0.56 -0.4
79,640 + OHPLBJKB_04431 0.56 +0.3
79,651 - OHPLBJKB_04431 0.57 -0.1
79,728 - OHPLBJKB_04431 0.69 -0.1
79,767 - OHPLBJKB_04431 0.74 -0.2
79,767 - OHPLBJKB_04431 0.74 +0.9
79,776 + OHPLBJKB_04431 0.76 -0.1
79,822 - OHPLBJKB_04431 0.82 -1.1
79,854 - OHPLBJKB_04431 0.87 +1.9
79,929 + -0.7
79,941 + +0.9
79,941 + +1.9
79,941 + -0.7
79,942 - +1.9

Or see this region's nucleotide sequence