Strain Fitness in Escherichia coli HS(pFamp)R (ATCC 700891) around OHPLBJKB_04388

Experiment: Control_HSF

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOHPLBJKB_04387 and OHPLBJKB_04388 overlap by 4 nucleotidesOHPLBJKB_04388 and OHPLBJKB_04389 overlap by 14 nucleotidesOHPLBJKB_04389 and OHPLBJKB_04390 overlap by 11 nucleotidesOHPLBJKB_04390 and OHPLBJKB_04391 overlap by 14 nucleotides OHPLBJKB_04387: OHPLBJKB_04387 - hypothetical protein, at 48,680 to 50,056 _04387 OHPLBJKB_04388: OHPLBJKB_04388 - hypothetical protein, at 50,053 to 50,433 _04388 OHPLBJKB_04389: OHPLBJKB_04389 - hypothetical protein, at 50,420 to 50,701 _04389 OHPLBJKB_04390: OHPLBJKB_04390 - hypothetical protein, at 50,691 to 51,236 _04390 OHPLBJKB_04391: OHPLBJKB_04391 - Protein TraQ, at 51,223 to 51,507 _04391 Position (kb) 50 51Strain fitness (log2 ratio) -1 0 1 2 3at 49.124 kb on - strand, within OHPLBJKB_04387at 49.192 kb on + strand, within OHPLBJKB_04387at 49.474 kb on + strand, within OHPLBJKB_04387at 49.474 kb on + strand, within OHPLBJKB_04387at 49.474 kb on + strand, within OHPLBJKB_04387at 49.474 kb on + strand, within OHPLBJKB_04387at 49.474 kb on + strand, within OHPLBJKB_04387at 49.618 kb on + strand, within OHPLBJKB_04387at 49.619 kb on - strand, within OHPLBJKB_04387at 49.619 kb on - strand, within OHPLBJKB_04387at 49.624 kb on + strand, within OHPLBJKB_04387at 49.624 kb on + strand, within OHPLBJKB_04387at 49.625 kb on - strand, within OHPLBJKB_04387at 49.726 kb on + strand, within OHPLBJKB_04387at 49.765 kb on + strand, within OHPLBJKB_04387at 49.785 kb on + strand, within OHPLBJKB_04387at 49.786 kb on - strand, within OHPLBJKB_04387at 49.869 kb on + strand, within OHPLBJKB_04387at 49.870 kb on - strand, within OHPLBJKB_04387at 49.891 kb on - strand, within OHPLBJKB_04387at 49.931 kb on - strandat 49.951 kb on + strandat 49.955 kb on - strandat 49.955 kb on - strandat 50.012 kb on + strandat 50.091 kb on - strand, within OHPLBJKB_04388at 50.187 kb on - strand, within OHPLBJKB_04388at 50.207 kb on + strand, within OHPLBJKB_04388at 50.207 kb on + strand, within OHPLBJKB_04388at 50.229 kb on - strand, within OHPLBJKB_04388at 50.642 kb on + strand, within OHPLBJKB_04389at 50.678 kb on + strandat 50.923 kb on + strand, within OHPLBJKB_04390at 50.924 kb on - strand, within OHPLBJKB_04390at 50.989 kb on + strand, within OHPLBJKB_04390at 51.008 kb on + strand, within OHPLBJKB_04390at 51.008 kb on + strand, within OHPLBJKB_04390at 51.008 kb on + strand, within OHPLBJKB_04390at 51.129 kb on - strand, within OHPLBJKB_04390at 51.224 kb on + strandat 51.338 kb on + strand, within OHPLBJKB_04391

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Per-strain Table

Position Strand Gene LocusTag Fraction Control_HSF
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49,124 - OHPLBJKB_04387 0.32 +1.5
49,192 + OHPLBJKB_04387 0.37 +1.6
49,474 + OHPLBJKB_04387 0.58 -0.1
49,474 + OHPLBJKB_04387 0.58 +1.2
49,474 + OHPLBJKB_04387 0.58 +2.9
49,474 + OHPLBJKB_04387 0.58 -1.4
49,474 + OHPLBJKB_04387 0.58 +1.9
49,618 + OHPLBJKB_04387 0.68 -1.0
49,619 - OHPLBJKB_04387 0.68 +2.5
49,619 - OHPLBJKB_04387 0.68 +1.7
49,624 + OHPLBJKB_04387 0.69 -0.4
49,624 + OHPLBJKB_04387 0.69 +0.5
49,625 - OHPLBJKB_04387 0.69 +0.6
49,726 + OHPLBJKB_04387 0.76 -0.9
49,765 + OHPLBJKB_04387 0.79 -0.1
49,785 + OHPLBJKB_04387 0.80 +0.2
49,786 - OHPLBJKB_04387 0.80 -0.8
49,869 + OHPLBJKB_04387 0.86 +0.3
49,870 - OHPLBJKB_04387 0.86 +0.9
49,891 - OHPLBJKB_04387 0.88 +2.5
49,931 - +0.4
49,951 + +0.9
49,955 - -0.1
49,955 - +0.6
50,012 + -1.7
50,091 - OHPLBJKB_04388 0.10 -0.7
50,187 - OHPLBJKB_04388 0.35 -1.4
50,207 + OHPLBJKB_04388 0.40 +0.1
50,207 + OHPLBJKB_04388 0.40 +0.9
50,229 - OHPLBJKB_04388 0.46 -1.1
50,642 + OHPLBJKB_04389 0.79 +0.9
50,678 + -0.1
50,923 + OHPLBJKB_04390 0.42 -0.7
50,924 - OHPLBJKB_04390 0.43 -0.7
50,989 + OHPLBJKB_04390 0.55 -1.4
51,008 + OHPLBJKB_04390 0.58 +0.1
51,008 + OHPLBJKB_04390 0.58 -0.4
51,008 + OHPLBJKB_04390 0.58 +0.3
51,129 - OHPLBJKB_04390 0.80 +0.4
51,224 + -0.4
51,338 + OHPLBJKB_04391 0.40 -0.1

Or see this region's nucleotide sequence