Strain Fitness in Escherichia coli HS(pFamp)R (ATCC 700891) around OHPLBJKB_04060

Experiment: Control_HSF

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntOHPLBJKB_04057 and OHPLBJKB_04058 overlap by 8 nucleotidesOHPLBJKB_04058 and OHPLBJKB_04059 overlap by 17 nucleotidesOHPLBJKB_04059 and OHPLBJKB_04060 are separated by 1 nucleotidesOHPLBJKB_04060 and OHPLBJKB_04061 overlap by 4 nucleotides OHPLBJKB_04057: OHPLBJKB_04057 - Thiamine-phosphate synthase, at 4,262,214 to 4,262,849 _04057 OHPLBJKB_04058: OHPLBJKB_04058 - Sulfur carrier protein ThiS adenylyltransferase, at 4,262,842 to 4,263,597 _04058 OHPLBJKB_04059: OHPLBJKB_04059 - Sulfur carrier protein ThiS, at 4,263,581 to 4,263,781 _04059 OHPLBJKB_04060: OHPLBJKB_04060 - Thiazole synthase, at 4,263,783 to 4,264,553 _04060 OHPLBJKB_04061: OHPLBJKB_04061 - 2-iminoacetate synthase, at 4,264,550 to 4,265,683 _04061 Position (kb) 4263 4264 4265Strain fitness (log2 ratio) -2 -1 0 1at 4262.977 kb on + strand, within OHPLBJKB_04058at 4263.035 kb on + strand, within OHPLBJKB_04058at 4263.035 kb on + strand, within OHPLBJKB_04058at 4263.035 kb on + strand, within OHPLBJKB_04058at 4263.036 kb on - strand, within OHPLBJKB_04058at 4263.036 kb on - strand, within OHPLBJKB_04058at 4263.036 kb on - strand, within OHPLBJKB_04058at 4263.149 kb on + strand, within OHPLBJKB_04058at 4263.149 kb on + strand, within OHPLBJKB_04058at 4263.149 kb on + strand, within OHPLBJKB_04058at 4263.150 kb on - strand, within OHPLBJKB_04058at 4263.150 kb on - strand, within OHPLBJKB_04058at 4263.150 kb on - strand, within OHPLBJKB_04058at 4263.150 kb on - strand, within OHPLBJKB_04058at 4263.150 kb on - strand, within OHPLBJKB_04058at 4263.246 kb on + strand, within OHPLBJKB_04058at 4263.246 kb on + strand, within OHPLBJKB_04058at 4263.247 kb on - strand, within OHPLBJKB_04058at 4263.247 kb on - strand, within OHPLBJKB_04058at 4263.280 kb on - strand, within OHPLBJKB_04058at 4263.460 kb on - strand, within OHPLBJKB_04058at 4263.460 kb on - strand, within OHPLBJKB_04058at 4263.460 kb on - strand, within OHPLBJKB_04058at 4263.464 kb on + strand, within OHPLBJKB_04058at 4263.464 kb on + strand, within OHPLBJKB_04058at 4263.464 kb on + strand, within OHPLBJKB_04058at 4263.476 kb on + strand, within OHPLBJKB_04058at 4263.596 kb on - strandat 4263.643 kb on - strand, within OHPLBJKB_04059at 4263.788 kb on - strandat 4263.792 kb on - strandat 4263.792 kb on - strandat 4263.792 kb on - strandat 4263.792 kb on - strandat 4263.987 kb on - strand, within OHPLBJKB_04060at 4263.987 kb on - strand, within OHPLBJKB_04060at 4264.069 kb on + strand, within OHPLBJKB_04060at 4264.194 kb on - strand, within OHPLBJKB_04060at 4264.632 kb on + strandat 4264.633 kb on - strandat 4264.633 kb on - strandat 4264.768 kb on + strand, within OHPLBJKB_04061at 4264.769 kb on - strand, within OHPLBJKB_04061at 4264.775 kb on + strand, within OHPLBJKB_04061at 4264.776 kb on - strand, within OHPLBJKB_04061at 4264.787 kb on + strand, within OHPLBJKB_04061at 4264.787 kb on + strand, within OHPLBJKB_04061at 4264.821 kb on - strand, within OHPLBJKB_04061at 4264.841 kb on - strand, within OHPLBJKB_04061at 4264.929 kb on + strand, within OHPLBJKB_04061at 4264.929 kb on + strand, within OHPLBJKB_04061at 4264.930 kb on - strand, within OHPLBJKB_04061at 4264.930 kb on - strand, within OHPLBJKB_04061at 4265.014 kb on - strand, within OHPLBJKB_04061at 4265.048 kb on + strand, within OHPLBJKB_04061at 4265.049 kb on - strand, within OHPLBJKB_04061at 4265.059 kb on - strand, within OHPLBJKB_04061at 4265.102 kb on + strand, within OHPLBJKB_04061at 4265.102 kb on + strand, within OHPLBJKB_04061at 4265.102 kb on + strand, within OHPLBJKB_04061at 4265.102 kb on + strand, within OHPLBJKB_04061at 4265.103 kb on - strand, within OHPLBJKB_04061at 4265.103 kb on - strand, within OHPLBJKB_04061at 4265.103 kb on - strand, within OHPLBJKB_04061at 4265.103 kb on - strand, within OHPLBJKB_04061at 4265.103 kb on - strand, within OHPLBJKB_04061at 4265.117 kb on + strand, within OHPLBJKB_04061at 4265.118 kb on - strand, within OHPLBJKB_04061at 4265.203 kb on + strand, within OHPLBJKB_04061at 4265.203 kb on + strand, within OHPLBJKB_04061at 4265.203 kb on + strand, within OHPLBJKB_04061at 4265.204 kb on - strand, within OHPLBJKB_04061at 4265.204 kb on - strand, within OHPLBJKB_04061at 4265.204 kb on - strand, within OHPLBJKB_04061at 4265.208 kb on + strand, within OHPLBJKB_04061at 4265.208 kb on + strand, within OHPLBJKB_04061at 4265.209 kb on - strand, within OHPLBJKB_04061at 4265.258 kb on + strand, within OHPLBJKB_04061at 4265.258 kb on + strand, within OHPLBJKB_04061at 4265.258 kb on + strand, within OHPLBJKB_04061at 4265.258 kb on + strand, within OHPLBJKB_04061at 4265.258 kb on + strand, within OHPLBJKB_04061at 4265.258 kb on + strand, within OHPLBJKB_04061at 4265.259 kb on - strand, within OHPLBJKB_04061at 4265.259 kb on - strand, within OHPLBJKB_04061at 4265.259 kb on - strand, within OHPLBJKB_04061at 4265.259 kb on - strand, within OHPLBJKB_04061at 4265.259 kb on - strand, within OHPLBJKB_04061at 4265.259 kb on - strand, within OHPLBJKB_04061at 4265.259 kb on - strand, within OHPLBJKB_04061at 4265.259 kb on - strand, within OHPLBJKB_04061at 4265.259 kb on - strand, within OHPLBJKB_04061at 4265.259 kb on - strand, within OHPLBJKB_04061at 4265.259 kb on - strand, within OHPLBJKB_04061at 4265.260 kb on + strand, within OHPLBJKB_04061at 4265.260 kb on + strand, within OHPLBJKB_04061at 4265.260 kb on + strand, within OHPLBJKB_04061at 4265.261 kb on - strand, within OHPLBJKB_04061at 4265.261 kb on - strand, within OHPLBJKB_04061at 4265.261 kb on - strand, within OHPLBJKB_04061at 4265.297 kb on + strand, within OHPLBJKB_04061at 4265.298 kb on - strand, within OHPLBJKB_04061at 4265.344 kb on + strand, within OHPLBJKB_04061at 4265.345 kb on - strand, within OHPLBJKB_04061at 4265.389 kb on - strand, within OHPLBJKB_04061

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Control_HSF
remove
4,262,977 + OHPLBJKB_04058 0.18 -2.5
4,263,035 + OHPLBJKB_04058 0.26 +0.4
4,263,035 + OHPLBJKB_04058 0.26 -0.1
4,263,035 + OHPLBJKB_04058 0.26 -0.1
4,263,036 - OHPLBJKB_04058 0.26 -1.3
4,263,036 - OHPLBJKB_04058 0.26 -1.5
4,263,036 - OHPLBJKB_04058 0.26 +0.9
4,263,149 + OHPLBJKB_04058 0.41 +0.9
4,263,149 + OHPLBJKB_04058 0.41 +0.2
4,263,149 + OHPLBJKB_04058 0.41 +0.7
4,263,150 - OHPLBJKB_04058 0.41 +0.3
4,263,150 - OHPLBJKB_04058 0.41 +0.2
4,263,150 - OHPLBJKB_04058 0.41 -1.1
4,263,150 - OHPLBJKB_04058 0.41 +0.0
4,263,150 - OHPLBJKB_04058 0.41 -0.2
4,263,246 + OHPLBJKB_04058 0.53 -1.2
4,263,246 + OHPLBJKB_04058 0.53 +0.2
4,263,247 - OHPLBJKB_04058 0.54 +0.1
4,263,247 - OHPLBJKB_04058 0.54 -0.3
4,263,280 - OHPLBJKB_04058 0.58 -0.3
4,263,460 - OHPLBJKB_04058 0.82 -0.5
4,263,460 - OHPLBJKB_04058 0.82 +0.6
4,263,460 - OHPLBJKB_04058 0.82 +0.3
4,263,464 + OHPLBJKB_04058 0.82 -0.3
4,263,464 + OHPLBJKB_04058 0.82 +0.3
4,263,464 + OHPLBJKB_04058 0.82 +0.3
4,263,476 + OHPLBJKB_04058 0.84 +0.4
4,263,596 - +1.2
4,263,643 - OHPLBJKB_04059 0.31 -0.2
4,263,788 - -1.6
4,263,792 - -0.2
4,263,792 - +0.1
4,263,792 - -0.1
4,263,792 - -2.1
4,263,987 - OHPLBJKB_04060 0.26 -0.6
4,263,987 - OHPLBJKB_04060 0.26 -0.2
4,264,069 + OHPLBJKB_04060 0.37 -1.8
4,264,194 - OHPLBJKB_04060 0.53 -1.1
4,264,632 + +1.0
4,264,633 - +0.1
4,264,633 - -1.0
4,264,768 + OHPLBJKB_04061 0.19 -1.4
4,264,769 - OHPLBJKB_04061 0.19 -1.1
4,264,775 + OHPLBJKB_04061 0.20 -1.1
4,264,776 - OHPLBJKB_04061 0.20 -1.1
4,264,787 + OHPLBJKB_04061 0.21 -0.1
4,264,787 + OHPLBJKB_04061 0.21 -0.6
4,264,821 - OHPLBJKB_04061 0.24 -1.7
4,264,841 - OHPLBJKB_04061 0.26 +0.1
4,264,929 + OHPLBJKB_04061 0.33 -0.4
4,264,929 + OHPLBJKB_04061 0.33 -1.0
4,264,930 - OHPLBJKB_04061 0.34 +0.4
4,264,930 - OHPLBJKB_04061 0.34 +0.6
4,265,014 - OHPLBJKB_04061 0.41 -1.3
4,265,048 + OHPLBJKB_04061 0.44 +0.8
4,265,049 - OHPLBJKB_04061 0.44 -0.7
4,265,059 - OHPLBJKB_04061 0.45 +0.4
4,265,102 + OHPLBJKB_04061 0.49 -0.8
4,265,102 + OHPLBJKB_04061 0.49 -0.4
4,265,102 + OHPLBJKB_04061 0.49 -0.3
4,265,102 + OHPLBJKB_04061 0.49 -0.4
4,265,103 - OHPLBJKB_04061 0.49 -0.4
4,265,103 - OHPLBJKB_04061 0.49 -0.4
4,265,103 - OHPLBJKB_04061 0.49 -0.0
4,265,103 - OHPLBJKB_04061 0.49 +0.1
4,265,103 - OHPLBJKB_04061 0.49 +0.2
4,265,117 + OHPLBJKB_04061 0.50 +0.1
4,265,118 - OHPLBJKB_04061 0.50 +1.4
4,265,203 + OHPLBJKB_04061 0.58 +0.0
4,265,203 + OHPLBJKB_04061 0.58 -0.6
4,265,203 + OHPLBJKB_04061 0.58 -0.9
4,265,204 - OHPLBJKB_04061 0.58 -0.1
4,265,204 - OHPLBJKB_04061 0.58 +0.0
4,265,204 - OHPLBJKB_04061 0.58 -0.0
4,265,208 + OHPLBJKB_04061 0.58 -1.0
4,265,208 + OHPLBJKB_04061 0.58 -0.1
4,265,209 - OHPLBJKB_04061 0.58 -0.1
4,265,258 + OHPLBJKB_04061 0.62 -0.8
4,265,258 + OHPLBJKB_04061 0.62 +0.1
4,265,258 + OHPLBJKB_04061 0.62 +0.9
4,265,258 + OHPLBJKB_04061 0.62 +0.4
4,265,258 + OHPLBJKB_04061 0.62 -0.3
4,265,258 + OHPLBJKB_04061 0.62 +0.4
4,265,259 - OHPLBJKB_04061 0.63 +0.5
4,265,259 - OHPLBJKB_04061 0.63 -0.0
4,265,259 - OHPLBJKB_04061 0.63 -0.4
4,265,259 - OHPLBJKB_04061 0.63 +1.4
4,265,259 - OHPLBJKB_04061 0.63 +0.3
4,265,259 - OHPLBJKB_04061 0.63 +1.6
4,265,259 - OHPLBJKB_04061 0.63 -0.0
4,265,259 - OHPLBJKB_04061 0.63 -0.4
4,265,259 - OHPLBJKB_04061 0.63 -0.1
4,265,259 - OHPLBJKB_04061 0.63 -0.7
4,265,259 - OHPLBJKB_04061 0.63 -0.6
4,265,260 + OHPLBJKB_04061 0.63 -0.5
4,265,260 + OHPLBJKB_04061 0.63 -0.9
4,265,260 + OHPLBJKB_04061 0.63 +0.6
4,265,261 - OHPLBJKB_04061 0.63 +0.3
4,265,261 - OHPLBJKB_04061 0.63 -1.7
4,265,261 - OHPLBJKB_04061 0.63 +0.9
4,265,297 + OHPLBJKB_04061 0.66 -0.1
4,265,298 - OHPLBJKB_04061 0.66 +1.0
4,265,344 + OHPLBJKB_04061 0.70 -0.7
4,265,345 - OHPLBJKB_04061 0.70 -0.0
4,265,389 - OHPLBJKB_04061 0.74 +0.7

Or see this region's nucleotide sequence