Strain Fitness in Escherichia coli HS(pFamp)R (ATCC 700891) around OHPLBJKB_03951

Experiment: Control_HSF

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOHPLBJKB_03949 and OHPLBJKB_03950 overlap by 1 nucleotidesOHPLBJKB_03950 and OHPLBJKB_03951 overlap by 14 nucleotidesOHPLBJKB_03951 and OHPLBJKB_03952 are separated by 1 nucleotidesOHPLBJKB_03952 and OHPLBJKB_03953 are separated by 146 nucleotides OHPLBJKB_03949: OHPLBJKB_03949 - Alpha-D-ribose 1-methylphosphonate 5-triphosphate diphosphatase, at 4,144,212 to 4,145,348 _03949 OHPLBJKB_03950: OHPLBJKB_03950 - Ribose 1,5-bisphosphate phosphokinase PhnN, at 4,145,348 to 4,145,905 _03950 OHPLBJKB_03951: OHPLBJKB_03951 - Aminoalkylphosphonate N-acetyltransferase, at 4,145,892 to 4,146,326 _03951 OHPLBJKB_03952: OHPLBJKB_03952 - Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase, at 4,146,328 to 4,147,086 _03952 OHPLBJKB_03953: OHPLBJKB_03953 - hypothetical protein, at 4,147,233 to 4,147,562 _03953 Position (kb) 4145 4146 4147Strain fitness (log2 ratio) -1 0 1at 4145.115 kb on + strand, within OHPLBJKB_03949at 4145.115 kb on + strand, within OHPLBJKB_03949at 4145.115 kb on + strand, within OHPLBJKB_03949at 4145.115 kb on + strand, within OHPLBJKB_03949at 4145.116 kb on - strand, within OHPLBJKB_03949at 4145.118 kb on + strand, within OHPLBJKB_03949at 4145.119 kb on - strand, within OHPLBJKB_03949at 4145.573 kb on + strand, within OHPLBJKB_03950at 4145.576 kb on + strand, within OHPLBJKB_03950at 4145.576 kb on + strand, within OHPLBJKB_03950at 4145.795 kb on + strand, within OHPLBJKB_03950at 4145.797 kb on + strand, within OHPLBJKB_03950at 4145.816 kb on - strand, within OHPLBJKB_03950at 4145.926 kb on - strandat 4146.177 kb on - strand, within OHPLBJKB_03951at 4146.181 kb on + strand, within OHPLBJKB_03951at 4146.181 kb on + strand, within OHPLBJKB_03951at 4146.274 kb on - strand, within OHPLBJKB_03951at 4146.324 kb on + strandat 4146.325 kb on - strandat 4146.456 kb on - strand, within OHPLBJKB_03952at 4146.561 kb on + strand, within OHPLBJKB_03952at 4146.561 kb on + strand, within OHPLBJKB_03952at 4146.562 kb on - strand, within OHPLBJKB_03952at 4146.581 kb on + strand, within OHPLBJKB_03952at 4146.582 kb on - strand, within OHPLBJKB_03952at 4146.661 kb on - strand, within OHPLBJKB_03952at 4146.795 kb on + strand, within OHPLBJKB_03952at 4146.795 kb on + strand, within OHPLBJKB_03952at 4146.795 kb on + strand, within OHPLBJKB_03952at 4146.796 kb on - strand, within OHPLBJKB_03952at 4146.861 kb on + strand, within OHPLBJKB_03952at 4146.935 kb on + strand, within OHPLBJKB_03952at 4146.935 kb on + strand, within OHPLBJKB_03952at 4146.936 kb on - strand, within OHPLBJKB_03952at 4146.939 kb on + strand, within OHPLBJKB_03952at 4147.244 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Control_HSF
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4,145,115 + OHPLBJKB_03949 0.79 -0.7
4,145,115 + OHPLBJKB_03949 0.79 -0.8
4,145,115 + OHPLBJKB_03949 0.79 -0.3
4,145,115 + OHPLBJKB_03949 0.79 +0.7
4,145,116 - OHPLBJKB_03949 0.80 +0.7
4,145,118 + OHPLBJKB_03949 0.80 -0.4
4,145,119 - OHPLBJKB_03949 0.80 +0.9
4,145,573 + OHPLBJKB_03950 0.40 -0.4
4,145,576 + OHPLBJKB_03950 0.41 +0.6
4,145,576 + OHPLBJKB_03950 0.41 +0.3
4,145,795 + OHPLBJKB_03950 0.80 -0.1
4,145,797 + OHPLBJKB_03950 0.80 -0.6
4,145,816 - OHPLBJKB_03950 0.84 +0.4
4,145,926 - +1.0
4,146,177 - OHPLBJKB_03951 0.66 -0.5
4,146,181 + OHPLBJKB_03951 0.66 -0.9
4,146,181 + OHPLBJKB_03951 0.66 -0.1
4,146,274 - OHPLBJKB_03951 0.88 -1.1
4,146,324 + -0.1
4,146,325 - +0.3
4,146,456 - OHPLBJKB_03952 0.17 +0.8
4,146,561 + OHPLBJKB_03952 0.31 +0.2
4,146,561 + OHPLBJKB_03952 0.31 +0.0
4,146,562 - OHPLBJKB_03952 0.31 +0.6
4,146,581 + OHPLBJKB_03952 0.33 +0.5
4,146,582 - OHPLBJKB_03952 0.33 -0.4
4,146,661 - OHPLBJKB_03952 0.44 +0.4
4,146,795 + OHPLBJKB_03952 0.62 +0.5
4,146,795 + OHPLBJKB_03952 0.62 +0.9
4,146,795 + OHPLBJKB_03952 0.62 +0.7
4,146,796 - OHPLBJKB_03952 0.62 -0.7
4,146,861 + OHPLBJKB_03952 0.70 +1.2
4,146,935 + OHPLBJKB_03952 0.80 +0.2
4,146,935 + OHPLBJKB_03952 0.80 -0.2
4,146,936 - OHPLBJKB_03952 0.80 -0.5
4,146,939 + OHPLBJKB_03952 0.81 -0.6
4,147,244 - -1.4

Or see this region's nucleotide sequence