Strain Fitness in Escherichia coli HS(pFamp)R (ATCC 700891) around OHPLBJKB_03889

Experiment: Control_HSF

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOHPLBJKB_03887 and OHPLBJKB_03888 are separated by 10 nucleotidesOHPLBJKB_03888 and OHPLBJKB_03889 are separated by 10 nucleotidesOHPLBJKB_03889 and OHPLBJKB_03890 are separated by 62 nucleotides OHPLBJKB_03887: OHPLBJKB_03887 - Fumarate reductase iron-sulfur subunit, at 4,080,187 to 4,080,921 _03887 OHPLBJKB_03888: OHPLBJKB_03888 - Fumarate reductase subunit C, at 4,080,932 to 4,081,327 _03888 OHPLBJKB_03889: OHPLBJKB_03889 - Fumarate reductase subunit D, at 4,081,338 to 4,081,697 _03889 OHPLBJKB_03890: OHPLBJKB_03890 - Beta-lactamase, at 4,081,760 to 4,082,893 _03890 Position (kb) 4081 4082Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 4080.347 kb on - strand, within OHPLBJKB_03887at 4080.420 kb on + strand, within OHPLBJKB_03887at 4080.421 kb on - strand, within OHPLBJKB_03887at 4080.421 kb on - strand, within OHPLBJKB_03887at 4080.421 kb on - strand, within OHPLBJKB_03887at 4080.439 kb on + strand, within OHPLBJKB_03887at 4080.439 kb on + strand, within OHPLBJKB_03887at 4080.439 kb on + strand, within OHPLBJKB_03887at 4080.440 kb on - strand, within OHPLBJKB_03887at 4080.451 kb on - strand, within OHPLBJKB_03887at 4080.471 kb on + strand, within OHPLBJKB_03887at 4080.471 kb on + strand, within OHPLBJKB_03887at 4080.471 kb on + strand, within OHPLBJKB_03887at 4080.472 kb on - strand, within OHPLBJKB_03887at 4080.472 kb on - strand, within OHPLBJKB_03887at 4080.544 kb on + strand, within OHPLBJKB_03887at 4080.544 kb on + strand, within OHPLBJKB_03887at 4080.545 kb on - strand, within OHPLBJKB_03887at 4080.582 kb on + strand, within OHPLBJKB_03887at 4080.582 kb on + strand, within OHPLBJKB_03887at 4080.582 kb on + strand, within OHPLBJKB_03887at 4080.583 kb on - strand, within OHPLBJKB_03887at 4080.613 kb on + strand, within OHPLBJKB_03887at 4080.613 kb on + strand, within OHPLBJKB_03887at 4080.709 kb on - strand, within OHPLBJKB_03887at 4080.709 kb on - strand, within OHPLBJKB_03887at 4080.724 kb on + strand, within OHPLBJKB_03887at 4080.750 kb on + strand, within OHPLBJKB_03887at 4080.763 kb on - strand, within OHPLBJKB_03887at 4080.791 kb on + strand, within OHPLBJKB_03887at 4080.801 kb on + strand, within OHPLBJKB_03887at 4080.801 kb on + strand, within OHPLBJKB_03887at 4080.802 kb on - strand, within OHPLBJKB_03887at 4080.947 kb on - strandat 4080.953 kb on + strandat 4080.953 kb on + strandat 4080.953 kb on + strandat 4080.953 kb on + strandat 4080.953 kb on + strandat 4080.953 kb on + strandat 4080.954 kb on - strandat 4080.954 kb on - strandat 4080.954 kb on - strandat 4080.954 kb on - strandat 4080.958 kb on - strandat 4080.958 kb on - strandat 4081.007 kb on + strand, within OHPLBJKB_03888at 4081.007 kb on + strand, within OHPLBJKB_03888at 4081.007 kb on + strand, within OHPLBJKB_03888at 4081.008 kb on - strand, within OHPLBJKB_03888at 4081.008 kb on - strand, within OHPLBJKB_03888at 4081.008 kb on - strand, within OHPLBJKB_03888at 4081.227 kb on + strand, within OHPLBJKB_03888at 4081.227 kb on + strand, within OHPLBJKB_03888at 4081.227 kb on + strand, within OHPLBJKB_03888at 4081.259 kb on - strand, within OHPLBJKB_03888at 4081.300 kb on - strandat 4081.300 kb on - strandat 4081.300 kb on - strandat 4081.300 kb on - strandat 4081.319 kb on + strandat 4081.326 kb on - strandat 4081.404 kb on - strand, within OHPLBJKB_03889at 4081.404 kb on - strand, within OHPLBJKB_03889at 4081.404 kb on - strand, within OHPLBJKB_03889at 4081.419 kb on - strand, within OHPLBJKB_03889at 4081.419 kb on - strand, within OHPLBJKB_03889at 4081.448 kb on + strand, within OHPLBJKB_03889at 4081.449 kb on - strand, within OHPLBJKB_03889at 4081.491 kb on + strand, within OHPLBJKB_03889at 4081.577 kb on - strand, within OHPLBJKB_03889at 4081.641 kb on + strand, within OHPLBJKB_03889at 4081.695 kb on + strandat 4081.695 kb on + strandat 4081.700 kb on + strandat 4081.700 kb on + strandat 4081.711 kb on + strandat 4081.712 kb on - strandat 4081.712 kb on - strandat 4081.759 kb on + strandat 4081.759 kb on + strandat 4081.759 kb on + strandat 4081.759 kb on + strandat 4081.759 kb on + strandat 4081.759 kb on + strandat 4081.759 kb on + strandat 4081.760 kb on - strandat 4081.760 kb on - strandat 4081.760 kb on - strandat 4081.788 kb on + strandat 4081.838 kb on - strandat 4081.856 kb on - strandat 4081.856 kb on - strandat 4081.866 kb on + strandat 4081.866 kb on + strandat 4081.866 kb on + strandat 4081.866 kb on + strandat 4081.867 kb on - strandat 4081.867 kb on - strandat 4081.867 kb on - strandat 4081.867 kb on - strandat 4081.867 kb on - strandat 4081.925 kb on + strand, within OHPLBJKB_03890at 4081.925 kb on + strand, within OHPLBJKB_03890at 4081.925 kb on + strand, within OHPLBJKB_03890at 4081.926 kb on - strand, within OHPLBJKB_03890at 4081.926 kb on - strand, within OHPLBJKB_03890at 4081.940 kb on + strand, within OHPLBJKB_03890at 4081.992 kb on + strand, within OHPLBJKB_03890at 4081.992 kb on + strand, within OHPLBJKB_03890at 4081.993 kb on - strand, within OHPLBJKB_03890at 4082.014 kb on + strand, within OHPLBJKB_03890at 4082.062 kb on - strand, within OHPLBJKB_03890at 4082.082 kb on - strand, within OHPLBJKB_03890at 4082.124 kb on + strand, within OHPLBJKB_03890at 4082.124 kb on + strand, within OHPLBJKB_03890at 4082.124 kb on + strand, within OHPLBJKB_03890at 4082.124 kb on + strand, within OHPLBJKB_03890at 4082.124 kb on + strand, within OHPLBJKB_03890at 4082.125 kb on - strand, within OHPLBJKB_03890at 4082.125 kb on - strand, within OHPLBJKB_03890at 4082.125 kb on - strand, within OHPLBJKB_03890at 4082.125 kb on - strand, within OHPLBJKB_03890at 4082.125 kb on - strand, within OHPLBJKB_03890at 4082.127 kb on + strand, within OHPLBJKB_03890at 4082.127 kb on + strand, within OHPLBJKB_03890at 4082.127 kb on + strand, within OHPLBJKB_03890at 4082.127 kb on + strand, within OHPLBJKB_03890at 4082.127 kb on + strand, within OHPLBJKB_03890at 4082.127 kb on + strand, within OHPLBJKB_03890at 4082.127 kb on + strand, within OHPLBJKB_03890at 4082.127 kb on + strand, within OHPLBJKB_03890at 4082.127 kb on + strand, within OHPLBJKB_03890at 4082.127 kb on + strand, within OHPLBJKB_03890at 4082.127 kb on + strand, within OHPLBJKB_03890at 4082.127 kb on + strand, within OHPLBJKB_03890at 4082.128 kb on - strand, within OHPLBJKB_03890at 4082.128 kb on - strand, within OHPLBJKB_03890at 4082.128 kb on - strand, within OHPLBJKB_03890at 4082.128 kb on - strand, within OHPLBJKB_03890at 4082.128 kb on - strand, within OHPLBJKB_03890at 4082.128 kb on - strand, within OHPLBJKB_03890at 4082.141 kb on + strand, within OHPLBJKB_03890at 4082.141 kb on + strand, within OHPLBJKB_03890at 4082.256 kb on - strand, within OHPLBJKB_03890at 4082.365 kb on + strand, within OHPLBJKB_03890at 4082.365 kb on + strand, within OHPLBJKB_03890at 4082.365 kb on + strand, within OHPLBJKB_03890at 4082.366 kb on - strand, within OHPLBJKB_03890at 4082.366 kb on - strand, within OHPLBJKB_03890at 4082.374 kb on + strand, within OHPLBJKB_03890at 4082.379 kb on + strand, within OHPLBJKB_03890at 4082.379 kb on + strand, within OHPLBJKB_03890at 4082.380 kb on - strand, within OHPLBJKB_03890at 4082.402 kb on + strand, within OHPLBJKB_03890at 4082.403 kb on - strand, within OHPLBJKB_03890at 4082.403 kb on - strand, within OHPLBJKB_03890at 4082.468 kb on + strand, within OHPLBJKB_03890at 4082.469 kb on - strand, within OHPLBJKB_03890at 4082.519 kb on - strand, within OHPLBJKB_03890at 4082.600 kb on - strand, within OHPLBJKB_03890at 4082.600 kb on - strand, within OHPLBJKB_03890at 4082.600 kb on - strand, within OHPLBJKB_03890at 4082.603 kb on + strand, within OHPLBJKB_03890at 4082.603 kb on + strand, within OHPLBJKB_03890at 4082.604 kb on - strand, within OHPLBJKB_03890at 4082.604 kb on - strand, within OHPLBJKB_03890at 4082.604 kb on - strand, within OHPLBJKB_03890at 4082.604 kb on - strand, within OHPLBJKB_03890at 4082.604 kb on - strand, within OHPLBJKB_03890at 4082.604 kb on - strand, within OHPLBJKB_03890

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Per-strain Table

Position Strand Gene LocusTag Fraction Control_HSF
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4,080,347 - OHPLBJKB_03887 0.22 +0.3
4,080,420 + OHPLBJKB_03887 0.32 +0.5
4,080,421 - OHPLBJKB_03887 0.32 +0.4
4,080,421 - OHPLBJKB_03887 0.32 -0.7
4,080,421 - OHPLBJKB_03887 0.32 +0.2
4,080,439 + OHPLBJKB_03887 0.34 +0.1
4,080,439 + OHPLBJKB_03887 0.34 -0.7
4,080,439 + OHPLBJKB_03887 0.34 -0.5
4,080,440 - OHPLBJKB_03887 0.34 -0.0
4,080,451 - OHPLBJKB_03887 0.36 -0.3
4,080,471 + OHPLBJKB_03887 0.39 +3.4
4,080,471 + OHPLBJKB_03887 0.39 -0.4
4,080,471 + OHPLBJKB_03887 0.39 +0.4
4,080,472 - OHPLBJKB_03887 0.39 -0.6
4,080,472 - OHPLBJKB_03887 0.39 -0.9
4,080,544 + OHPLBJKB_03887 0.49 +0.1
4,080,544 + OHPLBJKB_03887 0.49 -2.6
4,080,545 - OHPLBJKB_03887 0.49 -0.2
4,080,582 + OHPLBJKB_03887 0.54 -0.3
4,080,582 + OHPLBJKB_03887 0.54 -0.2
4,080,582 + OHPLBJKB_03887 0.54 +0.2
4,080,583 - OHPLBJKB_03887 0.54 +1.6
4,080,613 + OHPLBJKB_03887 0.58 -0.8
4,080,613 + OHPLBJKB_03887 0.58 -0.0
4,080,709 - OHPLBJKB_03887 0.71 -0.4
4,080,709 - OHPLBJKB_03887 0.71 -0.6
4,080,724 + OHPLBJKB_03887 0.73 +0.4
4,080,750 + OHPLBJKB_03887 0.77 +0.3
4,080,763 - OHPLBJKB_03887 0.78 -0.9
4,080,791 + OHPLBJKB_03887 0.82 +0.3
4,080,801 + OHPLBJKB_03887 0.84 +0.2
4,080,801 + OHPLBJKB_03887 0.84 +0.3
4,080,802 - OHPLBJKB_03887 0.84 +0.3
4,080,947 - +0.2
4,080,953 + -0.8
4,080,953 + +0.2
4,080,953 + -0.7
4,080,953 + -0.3
4,080,953 + +0.1
4,080,953 + -0.4
4,080,954 - -1.7
4,080,954 - +0.2
4,080,954 - +0.6
4,080,954 - -0.2
4,080,958 - -1.4
4,080,958 - +1.0
4,081,007 + OHPLBJKB_03888 0.19 -0.3
4,081,007 + OHPLBJKB_03888 0.19 -0.0
4,081,007 + OHPLBJKB_03888 0.19 +0.2
4,081,008 - OHPLBJKB_03888 0.19 -0.7
4,081,008 - OHPLBJKB_03888 0.19 +1.4
4,081,008 - OHPLBJKB_03888 0.19 +0.4
4,081,227 + OHPLBJKB_03888 0.74 +1.0
4,081,227 + OHPLBJKB_03888 0.74 +0.7
4,081,227 + OHPLBJKB_03888 0.74 -0.3
4,081,259 - OHPLBJKB_03888 0.83 -0.5
4,081,300 - +1.5
4,081,300 - +2.0
4,081,300 - +1.0
4,081,300 - -0.6
4,081,319 + -0.3
4,081,326 - -0.6
4,081,404 - OHPLBJKB_03889 0.18 +0.2
4,081,404 - OHPLBJKB_03889 0.18 -0.2
4,081,404 - OHPLBJKB_03889 0.18 -1.1
4,081,419 - OHPLBJKB_03889 0.23 -0.4
4,081,419 - OHPLBJKB_03889 0.23 -1.8
4,081,448 + OHPLBJKB_03889 0.31 -0.8
4,081,449 - OHPLBJKB_03889 0.31 -0.4
4,081,491 + OHPLBJKB_03889 0.42 -2.4
4,081,577 - OHPLBJKB_03889 0.66 -1.2
4,081,641 + OHPLBJKB_03889 0.84 -0.3
4,081,695 + -0.8
4,081,695 + +0.3
4,081,700 + -1.5
4,081,700 + +1.1
4,081,711 + -0.1
4,081,712 - -1.0
4,081,712 - -0.6
4,081,759 + +1.1
4,081,759 + +0.1
4,081,759 + -1.1
4,081,759 + -0.5
4,081,759 + -0.3
4,081,759 + +0.0
4,081,759 + +1.2
4,081,760 - +0.1
4,081,760 - -0.1
4,081,760 - +0.5
4,081,788 + +0.2
4,081,838 - -0.0
4,081,856 - +0.6
4,081,856 - +0.8
4,081,866 + +0.5
4,081,866 + +0.9
4,081,866 + -0.5
4,081,866 + -0.2
4,081,867 - -0.2
4,081,867 - -0.4
4,081,867 - -0.0
4,081,867 - -0.5
4,081,867 - +0.5
4,081,925 + OHPLBJKB_03890 0.15 -0.5
4,081,925 + OHPLBJKB_03890 0.15 +0.8
4,081,925 + OHPLBJKB_03890 0.15 -0.5
4,081,926 - OHPLBJKB_03890 0.15 +0.0
4,081,926 - OHPLBJKB_03890 0.15 -0.4
4,081,940 + OHPLBJKB_03890 0.16 +2.0
4,081,992 + OHPLBJKB_03890 0.20 -0.4
4,081,992 + OHPLBJKB_03890 0.20 +1.1
4,081,993 - OHPLBJKB_03890 0.21 +0.8
4,082,014 + OHPLBJKB_03890 0.22 +0.4
4,082,062 - OHPLBJKB_03890 0.27 +0.7
4,082,082 - OHPLBJKB_03890 0.28 +0.6
4,082,124 + OHPLBJKB_03890 0.32 -2.2
4,082,124 + OHPLBJKB_03890 0.32 -0.9
4,082,124 + OHPLBJKB_03890 0.32 +1.8
4,082,124 + OHPLBJKB_03890 0.32 -1.4
4,082,124 + OHPLBJKB_03890 0.32 +0.7
4,082,125 - OHPLBJKB_03890 0.32 +0.4
4,082,125 - OHPLBJKB_03890 0.32 +0.7
4,082,125 - OHPLBJKB_03890 0.32 -0.6
4,082,125 - OHPLBJKB_03890 0.32 -0.6
4,082,125 - OHPLBJKB_03890 0.32 -0.5
4,082,127 + OHPLBJKB_03890 0.32 +0.3
4,082,127 + OHPLBJKB_03890 0.32 -1.6
4,082,127 + OHPLBJKB_03890 0.32 -0.1
4,082,127 + OHPLBJKB_03890 0.32 +0.0
4,082,127 + OHPLBJKB_03890 0.32 -1.5
4,082,127 + OHPLBJKB_03890 0.32 +0.1
4,082,127 + OHPLBJKB_03890 0.32 +0.5
4,082,127 + OHPLBJKB_03890 0.32 -0.5
4,082,127 + OHPLBJKB_03890 0.32 -0.5
4,082,127 + OHPLBJKB_03890 0.32 +0.2
4,082,127 + OHPLBJKB_03890 0.32 -1.0
4,082,127 + OHPLBJKB_03890 0.32 +1.7
4,082,128 - OHPLBJKB_03890 0.32 -0.0
4,082,128 - OHPLBJKB_03890 0.32 -0.7
4,082,128 - OHPLBJKB_03890 0.32 +0.8
4,082,128 - OHPLBJKB_03890 0.32 -0.4
4,082,128 - OHPLBJKB_03890 0.32 -0.7
4,082,128 - OHPLBJKB_03890 0.32 -0.2
4,082,141 + OHPLBJKB_03890 0.34 -1.1
4,082,141 + OHPLBJKB_03890 0.34 -0.3
4,082,256 - OHPLBJKB_03890 0.44 +0.0
4,082,365 + OHPLBJKB_03890 0.53 +1.4
4,082,365 + OHPLBJKB_03890 0.53 +1.3
4,082,365 + OHPLBJKB_03890 0.53 -0.8
4,082,366 - OHPLBJKB_03890 0.53 -0.5
4,082,366 - OHPLBJKB_03890 0.53 -0.2
4,082,374 + OHPLBJKB_03890 0.54 +1.1
4,082,379 + OHPLBJKB_03890 0.55 +0.8
4,082,379 + OHPLBJKB_03890 0.55 +0.6
4,082,380 - OHPLBJKB_03890 0.55 -0.3
4,082,402 + OHPLBJKB_03890 0.57 -0.6
4,082,403 - OHPLBJKB_03890 0.57 +0.6
4,082,403 - OHPLBJKB_03890 0.57 +0.5
4,082,468 + OHPLBJKB_03890 0.62 +0.4
4,082,469 - OHPLBJKB_03890 0.63 -0.0
4,082,519 - OHPLBJKB_03890 0.67 -2.8
4,082,600 - OHPLBJKB_03890 0.74 -0.2
4,082,600 - OHPLBJKB_03890 0.74 -0.6
4,082,600 - OHPLBJKB_03890 0.74 +0.5
4,082,603 + OHPLBJKB_03890 0.74 -0.1
4,082,603 + OHPLBJKB_03890 0.74 -0.2
4,082,604 - OHPLBJKB_03890 0.74 -0.5
4,082,604 - OHPLBJKB_03890 0.74 -0.9
4,082,604 - OHPLBJKB_03890 0.74 -1.4
4,082,604 - OHPLBJKB_03890 0.74 -0.4
4,082,604 - OHPLBJKB_03890 0.74 +0.4
4,082,604 - OHPLBJKB_03890 0.74 -0.7

Or see this region's nucleotide sequence