Strain Fitness in Escherichia coli HS(pFamp)R (ATCC 700891) around OHPLBJKB_03870

Experiment: Control_HSF

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOHPLBJKB_03869 and OHPLBJKB_03870 are separated by 75 nucleotidesOHPLBJKB_03870 and OHPLBJKB_03871 are separated by 85 nucleotides OHPLBJKB_03869: OHPLBJKB_03869 - GTPase HflX, at 4,059,312 to 4,060,592 _03869 OHPLBJKB_03870: OHPLBJKB_03870 - RNA-binding protein Hfq, at 4,060,668 to 4,060,976 _03870 OHPLBJKB_03871: OHPLBJKB_03871 - tRNA dimethylallyltransferase, at 4,061,062 to 4,062,012 _03871 Position (kb) 4060 4061Strain fitness (log2 ratio) -3 -2 -1 0 1at 4059.720 kb on + strand, within OHPLBJKB_03869at 4059.721 kb on - strand, within OHPLBJKB_03869at 4059.757 kb on - strand, within OHPLBJKB_03869at 4059.780 kb on + strand, within OHPLBJKB_03869at 4059.780 kb on + strand, within OHPLBJKB_03869at 4059.781 kb on - strand, within OHPLBJKB_03869at 4059.791 kb on + strand, within OHPLBJKB_03869at 4059.878 kb on + strand, within OHPLBJKB_03869at 4059.959 kb on + strand, within OHPLBJKB_03869at 4059.960 kb on - strand, within OHPLBJKB_03869at 4059.960 kb on - strand, within OHPLBJKB_03869at 4059.960 kb on - strand, within OHPLBJKB_03869at 4059.978 kb on - strand, within OHPLBJKB_03869at 4059.978 kb on - strand, within OHPLBJKB_03869at 4059.978 kb on - strand, within OHPLBJKB_03869at 4059.978 kb on - strand, within OHPLBJKB_03869at 4059.978 kb on - strand, within OHPLBJKB_03869at 4059.978 kb on - strand, within OHPLBJKB_03869at 4059.978 kb on - strand, within OHPLBJKB_03869at 4060.072 kb on - strand, within OHPLBJKB_03869at 4060.232 kb on + strand, within OHPLBJKB_03869at 4060.233 kb on - strand, within OHPLBJKB_03869at 4060.233 kb on - strand, within OHPLBJKB_03869at 4060.266 kb on - strand, within OHPLBJKB_03869at 4060.410 kb on - strand, within OHPLBJKB_03869at 4060.410 kb on - strand, within OHPLBJKB_03869at 4060.427 kb on - strand, within OHPLBJKB_03869at 4060.427 kb on - strand, within OHPLBJKB_03869at 4060.524 kb on - strandat 4060.524 kb on - strandat 4060.524 kb on - strandat 4060.543 kb on + strandat 4060.544 kb on - strandat 4060.544 kb on - strandat 4060.552 kb on - strandat 4060.596 kb on + strandat 4060.596 kb on + strandat 4060.596 kb on + strandat 4060.597 kb on - strandat 4060.597 kb on - strandat 4060.597 kb on - strandat 4060.598 kb on + strandat 4060.607 kb on - strandat 4060.607 kb on - strandat 4060.610 kb on + strandat 4060.611 kb on - strandat 4060.611 kb on - strandat 4060.704 kb on - strand, within OHPLBJKB_03870at 4060.704 kb on - strand, within OHPLBJKB_03870at 4060.730 kb on - strand, within OHPLBJKB_03870at 4060.730 kb on - strand, within OHPLBJKB_03870at 4060.730 kb on - strand, within OHPLBJKB_03870at 4060.730 kb on - strand, within OHPLBJKB_03870at 4060.730 kb on - strand, within OHPLBJKB_03870at 4060.734 kb on - strand, within OHPLBJKB_03870at 4060.734 kb on - strand, within OHPLBJKB_03870at 4060.734 kb on - strand, within OHPLBJKB_03870at 4060.908 kb on - strand, within OHPLBJKB_03870at 4060.991 kb on - strandat 4060.991 kb on - strandat 4060.991 kb on - strandat 4060.993 kb on - strandat 4060.993 kb on - strandat 4060.993 kb on - strandat 4060.993 kb on - strandat 4060.993 kb on - strandat 4060.993 kb on - strandat 4060.993 kb on - strandat 4060.999 kb on - strandat 4060.999 kb on - strandat 4060.999 kb on - strandat 4060.999 kb on - strandat 4060.999 kb on - strandat 4060.999 kb on - strandat 4060.999 kb on - strandat 4060.999 kb on - strandat 4060.999 kb on - strandat 4061.005 kb on - strandat 4061.093 kb on - strandat 4061.093 kb on - strandat 4061.093 kb on - strandat 4061.165 kb on - strand, within OHPLBJKB_03871at 4061.558 kb on - strand, within OHPLBJKB_03871

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Per-strain Table

Position Strand Gene LocusTag Fraction Control_HSF
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4,059,720 + OHPLBJKB_03869 0.32 +1.0
4,059,721 - OHPLBJKB_03869 0.32 +0.4
4,059,757 - OHPLBJKB_03869 0.35 -0.4
4,059,780 + OHPLBJKB_03869 0.37 -0.4
4,059,780 + OHPLBJKB_03869 0.37 -1.2
4,059,781 - OHPLBJKB_03869 0.37 -0.4
4,059,791 + OHPLBJKB_03869 0.37 -1.0
4,059,878 + OHPLBJKB_03869 0.44 +0.2
4,059,959 + OHPLBJKB_03869 0.51 +0.1
4,059,960 - OHPLBJKB_03869 0.51 +0.3
4,059,960 - OHPLBJKB_03869 0.51 +0.9
4,059,960 - OHPLBJKB_03869 0.51 -0.5
4,059,978 - OHPLBJKB_03869 0.52 +0.6
4,059,978 - OHPLBJKB_03869 0.52 -0.5
4,059,978 - OHPLBJKB_03869 0.52 +0.7
4,059,978 - OHPLBJKB_03869 0.52 +0.6
4,059,978 - OHPLBJKB_03869 0.52 -0.3
4,059,978 - OHPLBJKB_03869 0.52 -0.4
4,059,978 - OHPLBJKB_03869 0.52 -0.5
4,060,072 - OHPLBJKB_03869 0.59 -0.9
4,060,232 + OHPLBJKB_03869 0.72 +0.8
4,060,233 - OHPLBJKB_03869 0.72 -1.0
4,060,233 - OHPLBJKB_03869 0.72 -0.3
4,060,266 - OHPLBJKB_03869 0.74 -1.0
4,060,410 - OHPLBJKB_03869 0.86 +0.8
4,060,410 - OHPLBJKB_03869 0.86 -1.2
4,060,427 - OHPLBJKB_03869 0.87 -0.5
4,060,427 - OHPLBJKB_03869 0.87 +0.8
4,060,524 - -0.2
4,060,524 - -1.6
4,060,524 - -2.5
4,060,543 + +0.8
4,060,544 - -0.9
4,060,544 - +0.2
4,060,552 - +0.8
4,060,596 + +0.4
4,060,596 + -0.9
4,060,596 + +0.4
4,060,597 - +0.1
4,060,597 - -0.9
4,060,597 - -1.3
4,060,598 + +0.2
4,060,607 - +0.6
4,060,607 - -1.4
4,060,610 + +0.3
4,060,611 - -0.0
4,060,611 - -0.1
4,060,704 - OHPLBJKB_03870 0.12 -1.9
4,060,704 - OHPLBJKB_03870 0.12 -1.4
4,060,730 - OHPLBJKB_03870 0.20 -0.6
4,060,730 - OHPLBJKB_03870 0.20 -0.1
4,060,730 - OHPLBJKB_03870 0.20 -0.6
4,060,730 - OHPLBJKB_03870 0.20 -2.2
4,060,730 - OHPLBJKB_03870 0.20 +0.5
4,060,734 - OHPLBJKB_03870 0.21 +0.2
4,060,734 - OHPLBJKB_03870 0.21 -0.0
4,060,734 - OHPLBJKB_03870 0.21 -2.5
4,060,908 - OHPLBJKB_03870 0.78 -0.4
4,060,991 - -0.6
4,060,991 - +0.4
4,060,991 - -0.9
4,060,993 - +0.1
4,060,993 - -2.1
4,060,993 - -2.4
4,060,993 - -0.8
4,060,993 - -1.3
4,060,993 - -1.8
4,060,993 - -1.7
4,060,999 - -1.1
4,060,999 - -2.1
4,060,999 - -2.8
4,060,999 - +0.1
4,060,999 - -0.8
4,060,999 - -0.8
4,060,999 - -0.6
4,060,999 - -1.2
4,060,999 - -1.5
4,061,005 - +0.3
4,061,093 - -0.4
4,061,093 - -0.4
4,061,093 - -1.8
4,061,165 - OHPLBJKB_03871 0.11 -0.8
4,061,558 - OHPLBJKB_03871 0.52 -0.9

Or see this region's nucleotide sequence