Experiment: Control_HSF
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OHPLBJKB_03869 and OHPLBJKB_03870 are separated by 75 nucleotides OHPLBJKB_03870 and OHPLBJKB_03871 are separated by 85 nucleotides
OHPLBJKB_03869: OHPLBJKB_03869 - GTPase HflX, at 4,059,312 to 4,060,592
_03869
OHPLBJKB_03870: OHPLBJKB_03870 - RNA-binding protein Hfq, at 4,060,668 to 4,060,976
_03870
OHPLBJKB_03871: OHPLBJKB_03871 - tRNA dimethylallyltransferase, at 4,061,062 to 4,062,012
_03871
Position (kb)
4060
4061 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 4059.720 kb on + strand, within OHPLBJKB_03869 at 4059.721 kb on - strand, within OHPLBJKB_03869 at 4059.757 kb on - strand, within OHPLBJKB_03869 at 4059.780 kb on + strand, within OHPLBJKB_03869 at 4059.780 kb on + strand, within OHPLBJKB_03869 at 4059.781 kb on - strand, within OHPLBJKB_03869 at 4059.791 kb on + strand, within OHPLBJKB_03869 at 4059.878 kb on + strand, within OHPLBJKB_03869 at 4059.959 kb on + strand, within OHPLBJKB_03869 at 4059.960 kb on - strand, within OHPLBJKB_03869 at 4059.960 kb on - strand, within OHPLBJKB_03869 at 4059.960 kb on - strand, within OHPLBJKB_03869 at 4059.978 kb on - strand, within OHPLBJKB_03869 at 4059.978 kb on - strand, within OHPLBJKB_03869 at 4059.978 kb on - strand, within OHPLBJKB_03869 at 4059.978 kb on - strand, within OHPLBJKB_03869 at 4059.978 kb on - strand, within OHPLBJKB_03869 at 4059.978 kb on - strand, within OHPLBJKB_03869 at 4059.978 kb on - strand, within OHPLBJKB_03869 at 4060.072 kb on - strand, within OHPLBJKB_03869 at 4060.232 kb on + strand, within OHPLBJKB_03869 at 4060.233 kb on - strand, within OHPLBJKB_03869 at 4060.233 kb on - strand, within OHPLBJKB_03869 at 4060.266 kb on - strand, within OHPLBJKB_03869 at 4060.410 kb on - strand, within OHPLBJKB_03869 at 4060.410 kb on - strand, within OHPLBJKB_03869 at 4060.427 kb on - strand, within OHPLBJKB_03869 at 4060.427 kb on - strand, within OHPLBJKB_03869 at 4060.524 kb on - strand at 4060.524 kb on - strand at 4060.524 kb on - strand at 4060.543 kb on + strand at 4060.544 kb on - strand at 4060.544 kb on - strand at 4060.552 kb on - strand at 4060.596 kb on + strand at 4060.596 kb on + strand at 4060.596 kb on + strand at 4060.597 kb on - strand at 4060.597 kb on - strand at 4060.597 kb on - strand at 4060.598 kb on + strand at 4060.607 kb on - strand at 4060.607 kb on - strand at 4060.610 kb on + strand at 4060.611 kb on - strand at 4060.611 kb on - strand at 4060.704 kb on - strand, within OHPLBJKB_03870 at 4060.704 kb on - strand, within OHPLBJKB_03870 at 4060.730 kb on - strand, within OHPLBJKB_03870 at 4060.730 kb on - strand, within OHPLBJKB_03870 at 4060.730 kb on - strand, within OHPLBJKB_03870 at 4060.730 kb on - strand, within OHPLBJKB_03870 at 4060.730 kb on - strand, within OHPLBJKB_03870 at 4060.734 kb on - strand, within OHPLBJKB_03870 at 4060.734 kb on - strand, within OHPLBJKB_03870 at 4060.734 kb on - strand, within OHPLBJKB_03870 at 4060.908 kb on - strand, within OHPLBJKB_03870 at 4060.991 kb on - strand at 4060.991 kb on - strand at 4060.991 kb on - strand at 4060.993 kb on - strand at 4060.993 kb on - strand at 4060.993 kb on - strand at 4060.993 kb on - strand at 4060.993 kb on - strand at 4060.993 kb on - strand at 4060.993 kb on - strand at 4060.999 kb on - strand at 4060.999 kb on - strand at 4060.999 kb on - strand at 4060.999 kb on - strand at 4060.999 kb on - strand at 4060.999 kb on - strand at 4060.999 kb on - strand at 4060.999 kb on - strand at 4060.999 kb on - strand at 4061.005 kb on - strand at 4061.093 kb on - strand at 4061.093 kb on - strand at 4061.093 kb on - strand at 4061.165 kb on - strand, within OHPLBJKB_03871 at 4061.558 kb on - strand, within OHPLBJKB_03871
Per-strain Table
Position Strand Gene LocusTag Fraction Control_HSF remove 4,059,720 + OHPLBJKB_03869 0.32 +1.0 4,059,721 - OHPLBJKB_03869 0.32 +0.4 4,059,757 - OHPLBJKB_03869 0.35 -0.4 4,059,780 + OHPLBJKB_03869 0.37 -0.4 4,059,780 + OHPLBJKB_03869 0.37 -1.2 4,059,781 - OHPLBJKB_03869 0.37 -0.4 4,059,791 + OHPLBJKB_03869 0.37 -1.0 4,059,878 + OHPLBJKB_03869 0.44 +0.2 4,059,959 + OHPLBJKB_03869 0.51 +0.1 4,059,960 - OHPLBJKB_03869 0.51 +0.3 4,059,960 - OHPLBJKB_03869 0.51 +0.9 4,059,960 - OHPLBJKB_03869 0.51 -0.5 4,059,978 - OHPLBJKB_03869 0.52 +0.6 4,059,978 - OHPLBJKB_03869 0.52 -0.5 4,059,978 - OHPLBJKB_03869 0.52 +0.7 4,059,978 - OHPLBJKB_03869 0.52 +0.6 4,059,978 - OHPLBJKB_03869 0.52 -0.3 4,059,978 - OHPLBJKB_03869 0.52 -0.4 4,059,978 - OHPLBJKB_03869 0.52 -0.5 4,060,072 - OHPLBJKB_03869 0.59 -0.9 4,060,232 + OHPLBJKB_03869 0.72 +0.8 4,060,233 - OHPLBJKB_03869 0.72 -1.0 4,060,233 - OHPLBJKB_03869 0.72 -0.3 4,060,266 - OHPLBJKB_03869 0.74 -1.0 4,060,410 - OHPLBJKB_03869 0.86 +0.8 4,060,410 - OHPLBJKB_03869 0.86 -1.2 4,060,427 - OHPLBJKB_03869 0.87 -0.5 4,060,427 - OHPLBJKB_03869 0.87 +0.8 4,060,524 - -0.2 4,060,524 - -1.6 4,060,524 - -2.5 4,060,543 + +0.8 4,060,544 - -0.9 4,060,544 - +0.2 4,060,552 - +0.8 4,060,596 + +0.4 4,060,596 + -0.9 4,060,596 + +0.4 4,060,597 - +0.1 4,060,597 - -0.9 4,060,597 - -1.3 4,060,598 + +0.2 4,060,607 - +0.6 4,060,607 - -1.4 4,060,610 + +0.3 4,060,611 - -0.0 4,060,611 - -0.1 4,060,704 - OHPLBJKB_03870 0.12 -1.9 4,060,704 - OHPLBJKB_03870 0.12 -1.4 4,060,730 - OHPLBJKB_03870 0.20 -0.6 4,060,730 - OHPLBJKB_03870 0.20 -0.1 4,060,730 - OHPLBJKB_03870 0.20 -0.6 4,060,730 - OHPLBJKB_03870 0.20 -2.2 4,060,730 - OHPLBJKB_03870 0.20 +0.5 4,060,734 - OHPLBJKB_03870 0.21 +0.2 4,060,734 - OHPLBJKB_03870 0.21 -0.0 4,060,734 - OHPLBJKB_03870 0.21 -2.5 4,060,908 - OHPLBJKB_03870 0.78 -0.4 4,060,991 - -0.6 4,060,991 - +0.4 4,060,991 - -0.9 4,060,993 - +0.1 4,060,993 - -2.1 4,060,993 - -2.4 4,060,993 - -0.8 4,060,993 - -1.3 4,060,993 - -1.8 4,060,993 - -1.7 4,060,999 - -1.1 4,060,999 - -2.1 4,060,999 - -2.8 4,060,999 - +0.1 4,060,999 - -0.8 4,060,999 - -0.8 4,060,999 - -0.6 4,060,999 - -1.2 4,060,999 - -1.5 4,061,005 - +0.3 4,061,093 - -0.4 4,061,093 - -0.4 4,061,093 - -1.8 4,061,165 - OHPLBJKB_03871 0.11 -0.8 4,061,558 - OHPLBJKB_03871 0.52 -0.9
Or see this region's nucleotide sequence