Strain Fitness in Escherichia coli HS(pFamp)R (ATCC 700891) around OHPLBJKB_03612

Experiment: Control_HSF

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOHPLBJKB_03611 and OHPLBJKB_03612 are separated by 58 nucleotidesOHPLBJKB_03612 and OHPLBJKB_03613 overlap by 4 nucleotides OHPLBJKB_03611: OHPLBJKB_03611 - Inner membrane metabolite transport protein YgcS, at 3,792,062 to 3,793,393 _03611 OHPLBJKB_03612: OHPLBJKB_03612 - Ferredoxin-like protein FixX, at 3,793,452 to 3,793,739 _03612 OHPLBJKB_03613: OHPLBJKB_03613 - Putative thiazole biosynthetic enzyme, at 3,793,736 to 3,795,022 _03613 Position (kb) 3793 3794Strain fitness (log2 ratio) -2 -1 0 1at 3792.485 kb on + strand, within OHPLBJKB_03611at 3792.506 kb on - strand, within OHPLBJKB_03611at 3792.606 kb on + strand, within OHPLBJKB_03611at 3792.792 kb on - strand, within OHPLBJKB_03611at 3792.794 kb on + strand, within OHPLBJKB_03611at 3792.898 kb on - strand, within OHPLBJKB_03611at 3792.939 kb on + strand, within OHPLBJKB_03611at 3792.939 kb on + strand, within OHPLBJKB_03611at 3792.940 kb on - strand, within OHPLBJKB_03611at 3793.127 kb on - strand, within OHPLBJKB_03611at 3793.168 kb on + strand, within OHPLBJKB_03611at 3793.296 kb on - strandat 3793.296 kb on - strandat 3793.296 kb on - strandat 3793.296 kb on - strandat 3793.296 kb on - strandat 3793.299 kb on + strandat 3793.299 kb on + strandat 3793.299 kb on + strandat 3793.299 kb on + strandat 3793.299 kb on + strandat 3793.299 kb on + strandat 3793.300 kb on - strandat 3793.300 kb on - strandat 3793.300 kb on - strandat 3793.399 kb on - strandat 3793.436 kb on - strandat 3793.440 kb on - strandat 3793.440 kb on - strandat 3793.597 kb on + strand, within OHPLBJKB_03612at 3793.598 kb on - strand, within OHPLBJKB_03612at 3793.598 kb on - strand, within OHPLBJKB_03612at 3793.935 kb on + strand, within OHPLBJKB_03613at 3793.935 kb on + strand, within OHPLBJKB_03613at 3793.936 kb on - strand, within OHPLBJKB_03613at 3793.939 kb on + strand, within OHPLBJKB_03613at 3793.939 kb on + strand, within OHPLBJKB_03613at 3793.939 kb on + strand, within OHPLBJKB_03613at 3793.939 kb on + strand, within OHPLBJKB_03613at 3793.939 kb on + strand, within OHPLBJKB_03613at 3793.939 kb on + strand, within OHPLBJKB_03613at 3793.939 kb on + strand, within OHPLBJKB_03613at 3793.939 kb on + strand, within OHPLBJKB_03613at 3793.939 kb on + strand, within OHPLBJKB_03613at 3793.939 kb on + strand, within OHPLBJKB_03613at 3793.939 kb on + strand, within OHPLBJKB_03613at 3793.939 kb on + strand, within OHPLBJKB_03613at 3793.940 kb on - strand, within OHPLBJKB_03613at 3793.940 kb on - strand, within OHPLBJKB_03613at 3793.940 kb on - strand, within OHPLBJKB_03613at 3793.940 kb on - strand, within OHPLBJKB_03613at 3793.940 kb on - strand, within OHPLBJKB_03613at 3793.940 kb on - strand, within OHPLBJKB_03613at 3793.940 kb on - strand, within OHPLBJKB_03613at 3793.940 kb on - strand, within OHPLBJKB_03613at 3793.940 kb on - strand, within OHPLBJKB_03613at 3793.940 kb on - strand, within OHPLBJKB_03613at 3793.940 kb on - strand, within OHPLBJKB_03613at 3793.940 kb on - strand, within OHPLBJKB_03613at 3794.087 kb on - strand, within OHPLBJKB_03613at 3794.101 kb on + strand, within OHPLBJKB_03613at 3794.102 kb on - strand, within OHPLBJKB_03613at 3794.102 kb on - strand, within OHPLBJKB_03613at 3794.183 kb on + strand, within OHPLBJKB_03613at 3794.184 kb on - strand, within OHPLBJKB_03613at 3794.197 kb on - strand, within OHPLBJKB_03613at 3794.197 kb on - strand, within OHPLBJKB_03613at 3794.342 kb on - strand, within OHPLBJKB_03613at 3794.343 kb on + strand, within OHPLBJKB_03613at 3794.344 kb on - strand, within OHPLBJKB_03613at 3794.410 kb on + strand, within OHPLBJKB_03613at 3794.591 kb on + strand, within OHPLBJKB_03613at 3794.592 kb on - strand, within OHPLBJKB_03613at 3794.618 kb on + strand, within OHPLBJKB_03613at 3794.618 kb on + strand, within OHPLBJKB_03613at 3794.648 kb on + strand, within OHPLBJKB_03613at 3794.648 kb on + strand, within OHPLBJKB_03613at 3794.649 kb on - strand, within OHPLBJKB_03613

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Per-strain Table

Position Strand Gene LocusTag Fraction Control_HSF
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3,792,485 + OHPLBJKB_03611 0.32 +0.5
3,792,506 - OHPLBJKB_03611 0.33 +0.3
3,792,606 + OHPLBJKB_03611 0.41 +0.3
3,792,792 - OHPLBJKB_03611 0.55 -1.5
3,792,794 + OHPLBJKB_03611 0.55 +0.4
3,792,898 - OHPLBJKB_03611 0.63 -1.7
3,792,939 + OHPLBJKB_03611 0.66 -0.5
3,792,939 + OHPLBJKB_03611 0.66 -0.7
3,792,940 - OHPLBJKB_03611 0.66 +1.6
3,793,127 - OHPLBJKB_03611 0.80 -0.1
3,793,168 + OHPLBJKB_03611 0.83 -0.7
3,793,296 - -0.7
3,793,296 - -0.3
3,793,296 - -0.2
3,793,296 - -0.5
3,793,296 - -1.1
3,793,299 + -0.6
3,793,299 + -0.5
3,793,299 + +0.2
3,793,299 + +0.8
3,793,299 + -0.1
3,793,299 + -0.1
3,793,300 - -0.1
3,793,300 - -0.1
3,793,300 - -1.1
3,793,399 - -0.0
3,793,436 - +0.3
3,793,440 - +1.1
3,793,440 - +0.4
3,793,597 + OHPLBJKB_03612 0.50 -0.5
3,793,598 - OHPLBJKB_03612 0.51 -1.1
3,793,598 - OHPLBJKB_03612 0.51 -0.3
3,793,935 + OHPLBJKB_03613 0.15 +0.1
3,793,935 + OHPLBJKB_03613 0.15 -0.2
3,793,936 - OHPLBJKB_03613 0.16 +0.4
3,793,939 + OHPLBJKB_03613 0.16 +0.6
3,793,939 + OHPLBJKB_03613 0.16 -0.1
3,793,939 + OHPLBJKB_03613 0.16 -0.5
3,793,939 + OHPLBJKB_03613 0.16 +0.1
3,793,939 + OHPLBJKB_03613 0.16 +1.3
3,793,939 + OHPLBJKB_03613 0.16 -0.2
3,793,939 + OHPLBJKB_03613 0.16 +0.1
3,793,939 + OHPLBJKB_03613 0.16 -0.1
3,793,939 + OHPLBJKB_03613 0.16 -0.3
3,793,939 + OHPLBJKB_03613 0.16 -0.2
3,793,939 + OHPLBJKB_03613 0.16 -0.3
3,793,939 + OHPLBJKB_03613 0.16 -0.7
3,793,940 - OHPLBJKB_03613 0.16 +0.2
3,793,940 - OHPLBJKB_03613 0.16 -0.1
3,793,940 - OHPLBJKB_03613 0.16 +0.1
3,793,940 - OHPLBJKB_03613 0.16 +0.4
3,793,940 - OHPLBJKB_03613 0.16 +0.6
3,793,940 - OHPLBJKB_03613 0.16 +0.0
3,793,940 - OHPLBJKB_03613 0.16 -0.7
3,793,940 - OHPLBJKB_03613 0.16 -1.2
3,793,940 - OHPLBJKB_03613 0.16 -0.4
3,793,940 - OHPLBJKB_03613 0.16 +0.2
3,793,940 - OHPLBJKB_03613 0.16 +1.3
3,793,940 - OHPLBJKB_03613 0.16 +0.8
3,794,087 - OHPLBJKB_03613 0.27 -0.2
3,794,101 + OHPLBJKB_03613 0.28 -0.1
3,794,102 - OHPLBJKB_03613 0.28 +0.3
3,794,102 - OHPLBJKB_03613 0.28 +1.3
3,794,183 + OHPLBJKB_03613 0.35 +0.2
3,794,184 - OHPLBJKB_03613 0.35 +0.2
3,794,197 - OHPLBJKB_03613 0.36 +0.1
3,794,197 - OHPLBJKB_03613 0.36 -1.9
3,794,342 - OHPLBJKB_03613 0.47 -0.9
3,794,343 + OHPLBJKB_03613 0.47 -1.0
3,794,344 - OHPLBJKB_03613 0.47 +1.2
3,794,410 + OHPLBJKB_03613 0.52 -0.1
3,794,591 + OHPLBJKB_03613 0.66 +0.3
3,794,592 - OHPLBJKB_03613 0.67 +0.3
3,794,618 + OHPLBJKB_03613 0.69 +0.2
3,794,618 + OHPLBJKB_03613 0.69 -0.5
3,794,648 + OHPLBJKB_03613 0.71 +0.3
3,794,648 + OHPLBJKB_03613 0.71 -1.0
3,794,649 - OHPLBJKB_03613 0.71 -0.4

Or see this region's nucleotide sequence