Strain Fitness in Escherichia coli HS(pFamp)R (ATCC 700891) around OHPLBJKB_03234

Experiment: Control_HSF

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOHPLBJKB_03232 and OHPLBJKB_03233 are separated by 191 nucleotidesOHPLBJKB_03233 and OHPLBJKB_03234 are separated by 208 nucleotidesOHPLBJKB_03234 and OHPLBJKB_03235 are separated by 187 nucleotides OHPLBJKB_03232: OHPLBJKB_03232 - Peptidyl-prolyl cis-trans isomerase D, at 3,372,787 to 3,374,658 _03232 OHPLBJKB_03233: OHPLBJKB_03233 - DNA-binding protein HU-beta, at 3,374,850 to 3,375,122 _03233 OHPLBJKB_03234: OHPLBJKB_03234 - Lon protease, at 3,375,331 to 3,377,685 _03234 OHPLBJKB_03235: OHPLBJKB_03235 - ATP-dependent Clp protease ATP-binding subunit ClpX, at 3,377,873 to 3,379,147 _03235 Position (kb) 3375 3376 3377 3378Strain fitness (log2 ratio) -2 -1 0 1 2at 3374.410 kb on - strand, within OHPLBJKB_03232at 3374.411 kb on + strand, within OHPLBJKB_03232at 3374.411 kb on + strand, within OHPLBJKB_03232at 3374.411 kb on + strand, within OHPLBJKB_03232at 3374.411 kb on + strand, within OHPLBJKB_03232at 3374.412 kb on - strand, within OHPLBJKB_03232at 3374.439 kb on - strand, within OHPLBJKB_03232at 3374.537 kb on + strandat 3374.537 kb on + strandat 3374.537 kb on + strandat 3374.538 kb on - strandat 3374.541 kb on + strandat 3374.581 kb on + strandat 3374.581 kb on + strandat 3374.610 kb on + strandat 3374.663 kb on + strandat 3374.663 kb on + strandat 3374.663 kb on + strandat 3374.664 kb on - strandat 3374.691 kb on + strandat 3374.692 kb on - strandat 3374.706 kb on - strandat 3374.706 kb on - strandat 3374.789 kb on - strandat 3374.805 kb on + strandat 3374.805 kb on + strandat 3374.806 kb on - strandat 3374.852 kb on - strandat 3374.852 kb on - strandat 3374.900 kb on + strand, within OHPLBJKB_03233at 3374.988 kb on + strand, within OHPLBJKB_03233at 3374.997 kb on + strand, within OHPLBJKB_03233at 3374.997 kb on + strand, within OHPLBJKB_03233at 3374.998 kb on - strand, within OHPLBJKB_03233at 3374.998 kb on - strand, within OHPLBJKB_03233at 3375.038 kb on + strand, within OHPLBJKB_03233at 3375.041 kb on + strand, within OHPLBJKB_03233at 3375.041 kb on + strand, within OHPLBJKB_03233at 3375.042 kb on - strand, within OHPLBJKB_03233at 3375.042 kb on - strand, within OHPLBJKB_03233at 3375.049 kb on - strand, within OHPLBJKB_03233at 3375.049 kb on - strand, within OHPLBJKB_03233at 3375.049 kb on - strand, within OHPLBJKB_03233at 3375.049 kb on - strand, within OHPLBJKB_03233at 3375.078 kb on - strand, within OHPLBJKB_03233at 3375.078 kb on - strand, within OHPLBJKB_03233at 3375.139 kb on - strandat 3375.141 kb on - strandat 3375.145 kb on + strandat 3375.145 kb on + strandat 3375.145 kb on + strandat 3375.171 kb on - strandat 3375.187 kb on + strandat 3375.188 kb on - strandat 3375.189 kb on + strandat 3375.189 kb on + strandat 3375.189 kb on + strandat 3375.190 kb on - strandat 3375.190 kb on - strandat 3375.190 kb on - strandat 3375.209 kb on + strandat 3375.209 kb on + strandat 3375.210 kb on - strandat 3375.222 kb on - strandat 3375.222 kb on - strandat 3375.249 kb on - strandat 3375.249 kb on - strandat 3375.253 kb on + strandat 3375.254 kb on - strandat 3375.433 kb on + strandat 3375.433 kb on + strandat 3375.433 kb on + strandat 3375.433 kb on + strandat 3375.433 kb on + strandat 3375.433 kb on + strandat 3375.434 kb on - strandat 3375.434 kb on - strandat 3375.434 kb on - strandat 3375.465 kb on + strandat 3375.636 kb on + strand, within OHPLBJKB_03234at 3375.636 kb on + strand, within OHPLBJKB_03234at 3375.636 kb on + strand, within OHPLBJKB_03234at 3375.637 kb on - strand, within OHPLBJKB_03234at 3375.637 kb on - strand, within OHPLBJKB_03234at 3375.637 kb on - strand, within OHPLBJKB_03234at 3375.809 kb on + strand, within OHPLBJKB_03234at 3375.809 kb on + strand, within OHPLBJKB_03234at 3375.809 kb on + strand, within OHPLBJKB_03234at 3375.810 kb on - strand, within OHPLBJKB_03234at 3376.083 kb on - strand, within OHPLBJKB_03234at 3376.086 kb on - strand, within OHPLBJKB_03234at 3376.146 kb on + strand, within OHPLBJKB_03234at 3376.146 kb on + strand, within OHPLBJKB_03234at 3376.209 kb on - strand, within OHPLBJKB_03234at 3376.319 kb on + strand, within OHPLBJKB_03234at 3376.336 kb on + strand, within OHPLBJKB_03234at 3376.493 kb on + strand, within OHPLBJKB_03234at 3376.493 kb on + strand, within OHPLBJKB_03234at 3376.494 kb on - strand, within OHPLBJKB_03234at 3376.494 kb on - strand, within OHPLBJKB_03234at 3376.494 kb on - strand, within OHPLBJKB_03234at 3376.494 kb on - strand, within OHPLBJKB_03234at 3376.494 kb on - strand, within OHPLBJKB_03234at 3376.556 kb on + strand, within OHPLBJKB_03234at 3376.556 kb on + strand, within OHPLBJKB_03234at 3376.556 kb on + strand, within OHPLBJKB_03234at 3376.676 kb on + strand, within OHPLBJKB_03234at 3376.712 kb on + strand, within OHPLBJKB_03234at 3376.767 kb on + strand, within OHPLBJKB_03234at 3376.805 kb on + strand, within OHPLBJKB_03234at 3376.817 kb on - strand, within OHPLBJKB_03234at 3376.978 kb on - strand, within OHPLBJKB_03234at 3377.000 kb on + strand, within OHPLBJKB_03234at 3377.001 kb on - strand, within OHPLBJKB_03234at 3377.169 kb on + strand, within OHPLBJKB_03234at 3377.169 kb on + strand, within OHPLBJKB_03234at 3377.169 kb on + strand, within OHPLBJKB_03234at 3377.169 kb on + strand, within OHPLBJKB_03234at 3377.170 kb on - strand, within OHPLBJKB_03234at 3377.170 kb on - strand, within OHPLBJKB_03234at 3377.265 kb on - strand, within OHPLBJKB_03234at 3377.455 kb on + strandat 3377.456 kb on - strandat 3377.456 kb on - strandat 3377.457 kb on + strandat 3377.492 kb on - strandat 3377.685 kb on + strandat 3377.686 kb on - strandat 3377.699 kb on - strandat 3377.704 kb on - strandat 3377.704 kb on - strandat 3377.704 kb on - strandat 3377.718 kb on - strandat 3377.718 kb on - strandat 3377.751 kb on - strandat 3377.751 kb on - strandat 3377.751 kb on - strandat 3377.751 kb on - strandat 3377.751 kb on - strandat 3377.751 kb on - strandat 3377.751 kb on - strandat 3377.751 kb on - strandat 3377.751 kb on - strandat 3377.754 kb on - strandat 3377.754 kb on - strandat 3377.754 kb on - strandat 3377.760 kb on + strandat 3377.760 kb on + strandat 3377.761 kb on - strandat 3377.761 kb on - strandat 3377.761 kb on - strandat 3377.761 kb on - strandat 3377.761 kb on - strandat 3377.761 kb on - strandat 3377.768 kb on + strandat 3377.768 kb on + strandat 3377.768 kb on + strandat 3377.768 kb on + strandat 3377.768 kb on + strandat 3377.769 kb on - strandat 3377.769 kb on - strandat 3377.769 kb on - strandat 3377.769 kb on - strandat 3377.771 kb on - strandat 3377.806 kb on - strandat 3377.848 kb on + strandat 3377.852 kb on + strandat 3377.852 kb on + strandat 3377.852 kb on + strandat 3377.853 kb on - strandat 3377.858 kb on + strandat 3377.911 kb on - strandat 3377.994 kb on + strandat 3377.994 kb on + strandat 3377.995 kb on - strandat 3377.995 kb on - strandat 3378.021 kb on - strand, within OHPLBJKB_03235at 3378.071 kb on - strand, within OHPLBJKB_03235at 3378.124 kb on + strand, within OHPLBJKB_03235at 3378.412 kb on + strand, within OHPLBJKB_03235at 3378.412 kb on + strand, within OHPLBJKB_03235at 3378.413 kb on - strand, within OHPLBJKB_03235at 3378.424 kb on + strand, within OHPLBJKB_03235at 3378.491 kb on + strand, within OHPLBJKB_03235at 3378.497 kb on - strand, within OHPLBJKB_03235at 3378.527 kb on + strand, within OHPLBJKB_03235at 3378.603 kb on + strand, within OHPLBJKB_03235at 3378.603 kb on + strand, within OHPLBJKB_03235at 3378.604 kb on - strand, within OHPLBJKB_03235at 3378.636 kb on + strand, within OHPLBJKB_03235at 3378.636 kb on + strand, within OHPLBJKB_03235

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Per-strain Table

Position Strand Gene LocusTag Fraction Control_HSF
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3,374,410 - OHPLBJKB_03232 0.87 -1.3
3,374,411 + OHPLBJKB_03232 0.87 -2.4
3,374,411 + OHPLBJKB_03232 0.87 -2.1
3,374,411 + OHPLBJKB_03232 0.87 -0.6
3,374,411 + OHPLBJKB_03232 0.87 +1.3
3,374,412 - OHPLBJKB_03232 0.87 -0.3
3,374,439 - OHPLBJKB_03232 0.88 +0.1
3,374,537 + +0.8
3,374,537 + -0.5
3,374,537 + -0.5
3,374,538 - -0.9
3,374,541 + -0.2
3,374,581 + -1.5
3,374,581 + +0.5
3,374,610 + +0.5
3,374,663 + +0.7
3,374,663 + -0.4
3,374,663 + +0.5
3,374,664 - +2.6
3,374,691 + -1.1
3,374,692 - -1.2
3,374,706 - -1.5
3,374,706 - +0.3
3,374,789 - +0.7
3,374,805 + +0.1
3,374,805 + +1.0
3,374,806 - +0.3
3,374,852 - +0.1
3,374,852 - -0.7
3,374,900 + OHPLBJKB_03233 0.18 -1.1
3,374,988 + OHPLBJKB_03233 0.51 -1.3
3,374,997 + OHPLBJKB_03233 0.54 +0.0
3,374,997 + OHPLBJKB_03233 0.54 -0.4
3,374,998 - OHPLBJKB_03233 0.54 -0.8
3,374,998 - OHPLBJKB_03233 0.54 -0.7
3,375,038 + OHPLBJKB_03233 0.69 -1.7
3,375,041 + OHPLBJKB_03233 0.70 -1.6
3,375,041 + OHPLBJKB_03233 0.70 -0.5
3,375,042 - OHPLBJKB_03233 0.70 +0.1
3,375,042 - OHPLBJKB_03233 0.70 -0.9
3,375,049 - OHPLBJKB_03233 0.73 -1.2
3,375,049 - OHPLBJKB_03233 0.73 +0.4
3,375,049 - OHPLBJKB_03233 0.73 +0.3
3,375,049 - OHPLBJKB_03233 0.73 -1.1
3,375,078 - OHPLBJKB_03233 0.84 -0.9
3,375,078 - OHPLBJKB_03233 0.84 -0.6
3,375,139 - -0.5
3,375,141 - -0.4
3,375,145 + +0.4
3,375,145 + +0.0
3,375,145 + -1.3
3,375,171 - -0.6
3,375,187 + -1.3
3,375,188 - -1.6
3,375,189 + +1.0
3,375,189 + -0.3
3,375,189 + -1.4
3,375,190 - -0.6
3,375,190 - -0.7
3,375,190 - -2.1
3,375,209 + -0.7
3,375,209 + +0.6
3,375,210 - +0.5
3,375,222 - +0.1
3,375,222 - +0.5
3,375,249 - +0.9
3,375,249 - +1.3
3,375,253 + -1.1
3,375,254 - +0.5
3,375,433 + -1.1
3,375,433 + -1.3
3,375,433 + +0.3
3,375,433 + -0.4
3,375,433 + +2.3
3,375,433 + -0.7
3,375,434 - -1.1
3,375,434 - -0.6
3,375,434 - -1.4
3,375,465 + -1.2
3,375,636 + OHPLBJKB_03234 0.13 +0.3
3,375,636 + OHPLBJKB_03234 0.13 -1.2
3,375,636 + OHPLBJKB_03234 0.13 -1.9
3,375,637 - OHPLBJKB_03234 0.13 +0.7
3,375,637 - OHPLBJKB_03234 0.13 -0.7
3,375,637 - OHPLBJKB_03234 0.13 +0.1
3,375,809 + OHPLBJKB_03234 0.20 -1.1
3,375,809 + OHPLBJKB_03234 0.20 +0.3
3,375,809 + OHPLBJKB_03234 0.20 -1.3
3,375,810 - OHPLBJKB_03234 0.20 -0.7
3,376,083 - OHPLBJKB_03234 0.32 -0.7
3,376,086 - OHPLBJKB_03234 0.32 -1.1
3,376,146 + OHPLBJKB_03234 0.35 -1.1
3,376,146 + OHPLBJKB_03234 0.35 -1.1
3,376,209 - OHPLBJKB_03234 0.37 +0.9
3,376,319 + OHPLBJKB_03234 0.42 -0.7
3,376,336 + OHPLBJKB_03234 0.43 -0.5
3,376,493 + OHPLBJKB_03234 0.49 +1.3
3,376,493 + OHPLBJKB_03234 0.49 +0.9
3,376,494 - OHPLBJKB_03234 0.49 +1.1
3,376,494 - OHPLBJKB_03234 0.49 -2.1
3,376,494 - OHPLBJKB_03234 0.49 -0.3
3,376,494 - OHPLBJKB_03234 0.49 -0.3
3,376,494 - OHPLBJKB_03234 0.49 -2.3
3,376,556 + OHPLBJKB_03234 0.52 -0.3
3,376,556 + OHPLBJKB_03234 0.52 -1.2
3,376,556 + OHPLBJKB_03234 0.52 -0.7
3,376,676 + OHPLBJKB_03234 0.57 +1.3
3,376,712 + OHPLBJKB_03234 0.59 -1.1
3,376,767 + OHPLBJKB_03234 0.61 -1.1
3,376,805 + OHPLBJKB_03234 0.63 +0.9
3,376,817 - OHPLBJKB_03234 0.63 -0.8
3,376,978 - OHPLBJKB_03234 0.70 -1.9
3,377,000 + OHPLBJKB_03234 0.71 -1.7
3,377,001 - OHPLBJKB_03234 0.71 +0.7
3,377,169 + OHPLBJKB_03234 0.78 -1.5
3,377,169 + OHPLBJKB_03234 0.78 +0.7
3,377,169 + OHPLBJKB_03234 0.78 -1.5
3,377,169 + OHPLBJKB_03234 0.78 +0.7
3,377,170 - OHPLBJKB_03234 0.78 -0.1
3,377,170 - OHPLBJKB_03234 0.78 -1.1
3,377,265 - OHPLBJKB_03234 0.82 -1.1
3,377,455 + -1.1
3,377,456 - +0.3
3,377,456 - +1.3
3,377,457 + +1.3
3,377,492 - +1.3
3,377,685 + +0.4
3,377,686 - -0.1
3,377,699 - +0.5
3,377,704 - -0.3
3,377,704 - -1.0
3,377,704 - +0.3
3,377,718 - +1.5
3,377,718 - +0.8
3,377,751 - +1.0
3,377,751 - -0.3
3,377,751 - +0.1
3,377,751 - -1.2
3,377,751 - +0.7
3,377,751 - +0.7
3,377,751 - +0.2
3,377,751 - -0.5
3,377,751 - +1.2
3,377,754 - +0.6
3,377,754 - -0.6
3,377,754 - -0.5
3,377,760 + -0.3
3,377,760 + -1.7
3,377,761 - -0.4
3,377,761 - -0.2
3,377,761 - +0.6
3,377,761 - -0.2
3,377,761 - -0.7
3,377,761 - -0.7
3,377,768 + -0.1
3,377,768 + +0.3
3,377,768 + -0.7
3,377,768 + -0.3
3,377,768 + -1.1
3,377,769 - -0.8
3,377,769 - -0.3
3,377,769 - +0.5
3,377,769 - -0.9
3,377,771 - -0.3
3,377,806 - +0.1
3,377,848 + +0.2
3,377,852 + -1.0
3,377,852 + +0.3
3,377,852 + -1.1
3,377,853 - -0.5
3,377,858 + -0.4
3,377,911 - +1.5
3,377,994 + -0.7
3,377,994 + -0.1
3,377,995 - -1.7
3,377,995 - -1.7
3,378,021 - OHPLBJKB_03235 0.12 -1.9
3,378,071 - OHPLBJKB_03235 0.16 -1.3
3,378,124 + OHPLBJKB_03235 0.20 -0.2
3,378,412 + OHPLBJKB_03235 0.42 -0.9
3,378,412 + OHPLBJKB_03235 0.42 +1.3
3,378,413 - OHPLBJKB_03235 0.42 -1.4
3,378,424 + OHPLBJKB_03235 0.43 -2.3
3,378,491 + OHPLBJKB_03235 0.48 -0.3
3,378,497 - OHPLBJKB_03235 0.49 -0.7
3,378,527 + OHPLBJKB_03235 0.51 -0.3
3,378,603 + OHPLBJKB_03235 0.57 -0.3
3,378,603 + OHPLBJKB_03235 0.57 -1.4
3,378,604 - OHPLBJKB_03235 0.57 +0.3
3,378,636 + OHPLBJKB_03235 0.60 +1.3
3,378,636 + OHPLBJKB_03235 0.60 -1.3

Or see this region's nucleotide sequence