Experiment: Control_HSF
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OHPLBJKB_03030 and OHPLBJKB_03031 are separated by 139 nucleotides OHPLBJKB_03031 and OHPLBJKB_03032 are separated by 288 nucleotides OHPLBJKB_03032 and OHPLBJKB_03033 are separated by 83 nucleotides OHPLBJKB_03033 and OHPLBJKB_03034 are separated by 49 nucleotides
OHPLBJKB_03030: OHPLBJKB_03030 - putative protein YbfE, at 3,160,317 to 3,160,679
_03030
OHPLBJKB_03031: OHPLBJKB_03031 - Flavodoxin 1, at 3,160,819 to 3,161,349
_03031
OHPLBJKB_03032: OHPLBJKB_03032 - Ferric uptake regulation protein, at 3,161,638 to 3,162,084
_03032
OHPLBJKB_03033: OHPLBJKB_03033 - putative lipoprotein ChiQ, at 3,162,168 to 3,162,494
_03033
OHPLBJKB_03034: OHPLBJKB_03034 - Chitoporin, at 3,162,544 to 3,163,950
_03034
Position (kb)
3161
3162
3163 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 3160.696 kb on - strand at 3161.407 kb on - strand at 3161.438 kb on + strand at 3161.439 kb on - strand at 3161.444 kb on + strand at 3161.445 kb on - strand at 3161.445 kb on - strand at 3161.479 kb on + strand at 3161.480 kb on - strand at 3161.480 kb on - strand at 3161.485 kb on + strand at 3161.485 kb on + strand at 3161.486 kb on - strand at 3161.490 kb on + strand at 3161.490 kb on + strand at 3161.490 kb on + strand at 3161.491 kb on - strand at 3161.491 kb on - strand at 3161.491 kb on - strand at 3161.491 kb on - strand at 3161.506 kb on + strand at 3161.507 kb on - strand at 3161.512 kb on + strand at 3161.513 kb on - strand at 3161.513 kb on - strand at 3161.513 kb on - strand at 3161.563 kb on + strand at 3161.563 kb on + strand at 3161.755 kb on + strand, within OHPLBJKB_03032 at 3161.755 kb on + strand, within OHPLBJKB_03032 at 3161.756 kb on - strand, within OHPLBJKB_03032 at 3161.801 kb on + strand, within OHPLBJKB_03032 at 3161.801 kb on + strand, within OHPLBJKB_03032 at 3161.801 kb on + strand, within OHPLBJKB_03032 at 3162.157 kb on - strand at 3162.169 kb on + strand at 3162.169 kb on + strand at 3162.170 kb on - strand at 3162.170 kb on - strand at 3162.170 kb on - strand at 3162.179 kb on + strand at 3162.387 kb on - strand, within OHPLBJKB_03033 at 3162.387 kb on - strand, within OHPLBJKB_03033 at 3162.397 kb on + strand, within OHPLBJKB_03033 at 3162.398 kb on - strand, within OHPLBJKB_03033 at 3162.398 kb on - strand, within OHPLBJKB_03033 at 3162.451 kb on - strand, within OHPLBJKB_03033 at 3162.706 kb on - strand, within OHPLBJKB_03034 at 3162.706 kb on - strand, within OHPLBJKB_03034 at 3162.706 kb on - strand, within OHPLBJKB_03034 at 3162.707 kb on + strand, within OHPLBJKB_03034 at 3162.707 kb on + strand, within OHPLBJKB_03034 at 3162.708 kb on - strand, within OHPLBJKB_03034 at 3162.708 kb on - strand, within OHPLBJKB_03034 at 3162.708 kb on - strand, within OHPLBJKB_03034 at 3162.726 kb on - strand, within OHPLBJKB_03034 at 3162.742 kb on - strand, within OHPLBJKB_03034 at 3162.758 kb on + strand, within OHPLBJKB_03034 at 3162.759 kb on - strand, within OHPLBJKB_03034 at 3162.762 kb on - strand, within OHPLBJKB_03034 at 3162.762 kb on - strand, within OHPLBJKB_03034 at 3162.762 kb on - strand, within OHPLBJKB_03034 at 3162.796 kb on - strand, within OHPLBJKB_03034 at 3162.809 kb on + strand, within OHPLBJKB_03034 at 3162.810 kb on - strand, within OHPLBJKB_03034 at 3162.815 kb on + strand, within OHPLBJKB_03034 at 3162.815 kb on + strand, within OHPLBJKB_03034 at 3162.815 kb on + strand, within OHPLBJKB_03034 at 3162.816 kb on - strand, within OHPLBJKB_03034 at 3162.816 kb on - strand, within OHPLBJKB_03034 at 3162.863 kb on + strand, within OHPLBJKB_03034 at 3162.863 kb on + strand, within OHPLBJKB_03034 at 3162.863 kb on + strand, within OHPLBJKB_03034 at 3162.863 kb on + strand, within OHPLBJKB_03034 at 3162.863 kb on + strand, within OHPLBJKB_03034 at 3162.956 kb on + strand, within OHPLBJKB_03034 at 3162.957 kb on - strand, within OHPLBJKB_03034 at 3162.957 kb on - strand, within OHPLBJKB_03034 at 3162.970 kb on - strand, within OHPLBJKB_03034 at 3163.036 kb on + strand, within OHPLBJKB_03034 at 3163.036 kb on + strand, within OHPLBJKB_03034 at 3163.037 kb on - strand, within OHPLBJKB_03034
Per-strain Table
Position Strand Gene LocusTag Fraction Control_HSF remove 3,160,696 - +0.4 3,161,407 - +0.3 3,161,438 + -0.1 3,161,439 - -0.7 3,161,444 + -1.8 3,161,445 - -0.7 3,161,445 - -0.2 3,161,479 + +0.3 3,161,480 - +0.6 3,161,480 - +0.0 3,161,485 + +0.0 3,161,485 + +1.0 3,161,486 - +0.3 3,161,490 + -1.0 3,161,490 + +0.6 3,161,490 + -0.4 3,161,491 - +0.4 3,161,491 - -0.3 3,161,491 - +0.7 3,161,491 - -0.1 3,161,506 + +0.5 3,161,507 - +0.2 3,161,512 + -1.1 3,161,513 - +0.8 3,161,513 - +1.1 3,161,513 - -0.3 3,161,563 + -1.1 3,161,563 + +1.3 3,161,755 + OHPLBJKB_03032 0.26 -1.3 3,161,755 + OHPLBJKB_03032 0.26 -0.3 3,161,756 - OHPLBJKB_03032 0.26 +1.3 3,161,801 + OHPLBJKB_03032 0.36 +0.3 3,161,801 + OHPLBJKB_03032 0.36 -1.7 3,161,801 + OHPLBJKB_03032 0.36 -0.7 3,162,157 - +1.5 3,162,169 + -0.7 3,162,169 + -0.5 3,162,170 - -1.3 3,162,170 - -0.9 3,162,170 - +0.2 3,162,179 + +0.1 3,162,387 - OHPLBJKB_03033 0.67 -0.7 3,162,387 - OHPLBJKB_03033 0.67 +0.1 3,162,397 + OHPLBJKB_03033 0.70 +0.3 3,162,398 - OHPLBJKB_03033 0.70 +0.6 3,162,398 - OHPLBJKB_03033 0.70 -0.4 3,162,451 - OHPLBJKB_03033 0.87 -1.7 3,162,706 - OHPLBJKB_03034 0.12 +0.1 3,162,706 - OHPLBJKB_03034 0.12 -0.0 3,162,706 - OHPLBJKB_03034 0.12 -3.7 3,162,707 + OHPLBJKB_03034 0.12 +0.5 3,162,707 + OHPLBJKB_03034 0.12 +0.1 3,162,708 - OHPLBJKB_03034 0.12 -0.2 3,162,708 - OHPLBJKB_03034 0.12 -0.8 3,162,708 - OHPLBJKB_03034 0.12 -1.1 3,162,726 - OHPLBJKB_03034 0.13 +0.8 3,162,742 - OHPLBJKB_03034 0.14 -0.2 3,162,758 + OHPLBJKB_03034 0.15 -0.2 3,162,759 - OHPLBJKB_03034 0.15 +0.1 3,162,762 - OHPLBJKB_03034 0.15 -0.0 3,162,762 - OHPLBJKB_03034 0.15 -1.7 3,162,762 - OHPLBJKB_03034 0.15 +0.4 3,162,796 - OHPLBJKB_03034 0.18 -0.0 3,162,809 + OHPLBJKB_03034 0.19 +0.3 3,162,810 - OHPLBJKB_03034 0.19 -0.0 3,162,815 + OHPLBJKB_03034 0.19 -0.2 3,162,815 + OHPLBJKB_03034 0.19 +0.8 3,162,815 + OHPLBJKB_03034 0.19 -0.5 3,162,816 - OHPLBJKB_03034 0.19 -1.6 3,162,816 - OHPLBJKB_03034 0.19 +1.1 3,162,863 + OHPLBJKB_03034 0.23 +0.1 3,162,863 + OHPLBJKB_03034 0.23 -1.0 3,162,863 + OHPLBJKB_03034 0.23 +1.1 3,162,863 + OHPLBJKB_03034 0.23 -0.8 3,162,863 + OHPLBJKB_03034 0.23 +1.5 3,162,956 + OHPLBJKB_03034 0.29 -1.5 3,162,957 - OHPLBJKB_03034 0.29 +0.1 3,162,957 - OHPLBJKB_03034 0.29 -0.4 3,162,970 - OHPLBJKB_03034 0.30 +0.4 3,163,036 + OHPLBJKB_03034 0.35 +0.1 3,163,036 + OHPLBJKB_03034 0.35 +0.6 3,163,037 - OHPLBJKB_03034 0.35 -0.0
Or see this region's nucleotide sequence