Strain Fitness in Escherichia coli HS(pFamp)R (ATCC 700891) around OHPLBJKB_03032

Experiment: Control_HSF

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOHPLBJKB_03030 and OHPLBJKB_03031 are separated by 139 nucleotidesOHPLBJKB_03031 and OHPLBJKB_03032 are separated by 288 nucleotidesOHPLBJKB_03032 and OHPLBJKB_03033 are separated by 83 nucleotidesOHPLBJKB_03033 and OHPLBJKB_03034 are separated by 49 nucleotides OHPLBJKB_03030: OHPLBJKB_03030 - putative protein YbfE, at 3,160,317 to 3,160,679 _03030 OHPLBJKB_03031: OHPLBJKB_03031 - Flavodoxin 1, at 3,160,819 to 3,161,349 _03031 OHPLBJKB_03032: OHPLBJKB_03032 - Ferric uptake regulation protein, at 3,161,638 to 3,162,084 _03032 OHPLBJKB_03033: OHPLBJKB_03033 - putative lipoprotein ChiQ, at 3,162,168 to 3,162,494 _03033 OHPLBJKB_03034: OHPLBJKB_03034 - Chitoporin, at 3,162,544 to 3,163,950 _03034 Position (kb) 3161 3162 3163Strain fitness (log2 ratio) -3 -2 -1 0 1at 3160.696 kb on - strandat 3161.407 kb on - strandat 3161.438 kb on + strandat 3161.439 kb on - strandat 3161.444 kb on + strandat 3161.445 kb on - strandat 3161.445 kb on - strandat 3161.479 kb on + strandat 3161.480 kb on - strandat 3161.480 kb on - strandat 3161.485 kb on + strandat 3161.485 kb on + strandat 3161.486 kb on - strandat 3161.490 kb on + strandat 3161.490 kb on + strandat 3161.490 kb on + strandat 3161.491 kb on - strandat 3161.491 kb on - strandat 3161.491 kb on - strandat 3161.491 kb on - strandat 3161.506 kb on + strandat 3161.507 kb on - strandat 3161.512 kb on + strandat 3161.513 kb on - strandat 3161.513 kb on - strandat 3161.513 kb on - strandat 3161.563 kb on + strandat 3161.563 kb on + strandat 3161.755 kb on + strand, within OHPLBJKB_03032at 3161.755 kb on + strand, within OHPLBJKB_03032at 3161.756 kb on - strand, within OHPLBJKB_03032at 3161.801 kb on + strand, within OHPLBJKB_03032at 3161.801 kb on + strand, within OHPLBJKB_03032at 3161.801 kb on + strand, within OHPLBJKB_03032at 3162.157 kb on - strandat 3162.169 kb on + strandat 3162.169 kb on + strandat 3162.170 kb on - strandat 3162.170 kb on - strandat 3162.170 kb on - strandat 3162.179 kb on + strandat 3162.387 kb on - strand, within OHPLBJKB_03033at 3162.387 kb on - strand, within OHPLBJKB_03033at 3162.397 kb on + strand, within OHPLBJKB_03033at 3162.398 kb on - strand, within OHPLBJKB_03033at 3162.398 kb on - strand, within OHPLBJKB_03033at 3162.451 kb on - strand, within OHPLBJKB_03033at 3162.706 kb on - strand, within OHPLBJKB_03034at 3162.706 kb on - strand, within OHPLBJKB_03034at 3162.706 kb on - strand, within OHPLBJKB_03034at 3162.707 kb on + strand, within OHPLBJKB_03034at 3162.707 kb on + strand, within OHPLBJKB_03034at 3162.708 kb on - strand, within OHPLBJKB_03034at 3162.708 kb on - strand, within OHPLBJKB_03034at 3162.708 kb on - strand, within OHPLBJKB_03034at 3162.726 kb on - strand, within OHPLBJKB_03034at 3162.742 kb on - strand, within OHPLBJKB_03034at 3162.758 kb on + strand, within OHPLBJKB_03034at 3162.759 kb on - strand, within OHPLBJKB_03034at 3162.762 kb on - strand, within OHPLBJKB_03034at 3162.762 kb on - strand, within OHPLBJKB_03034at 3162.762 kb on - strand, within OHPLBJKB_03034at 3162.796 kb on - strand, within OHPLBJKB_03034at 3162.809 kb on + strand, within OHPLBJKB_03034at 3162.810 kb on - strand, within OHPLBJKB_03034at 3162.815 kb on + strand, within OHPLBJKB_03034at 3162.815 kb on + strand, within OHPLBJKB_03034at 3162.815 kb on + strand, within OHPLBJKB_03034at 3162.816 kb on - strand, within OHPLBJKB_03034at 3162.816 kb on - strand, within OHPLBJKB_03034at 3162.863 kb on + strand, within OHPLBJKB_03034at 3162.863 kb on + strand, within OHPLBJKB_03034at 3162.863 kb on + strand, within OHPLBJKB_03034at 3162.863 kb on + strand, within OHPLBJKB_03034at 3162.863 kb on + strand, within OHPLBJKB_03034at 3162.956 kb on + strand, within OHPLBJKB_03034at 3162.957 kb on - strand, within OHPLBJKB_03034at 3162.957 kb on - strand, within OHPLBJKB_03034at 3162.970 kb on - strand, within OHPLBJKB_03034at 3163.036 kb on + strand, within OHPLBJKB_03034at 3163.036 kb on + strand, within OHPLBJKB_03034at 3163.037 kb on - strand, within OHPLBJKB_03034

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Per-strain Table

Position Strand Gene LocusTag Fraction Control_HSF
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3,160,696 - +0.4
3,161,407 - +0.3
3,161,438 + -0.1
3,161,439 - -0.7
3,161,444 + -1.8
3,161,445 - -0.7
3,161,445 - -0.2
3,161,479 + +0.3
3,161,480 - +0.6
3,161,480 - +0.0
3,161,485 + +0.0
3,161,485 + +1.0
3,161,486 - +0.3
3,161,490 + -1.0
3,161,490 + +0.6
3,161,490 + -0.4
3,161,491 - +0.4
3,161,491 - -0.3
3,161,491 - +0.7
3,161,491 - -0.1
3,161,506 + +0.5
3,161,507 - +0.2
3,161,512 + -1.1
3,161,513 - +0.8
3,161,513 - +1.1
3,161,513 - -0.3
3,161,563 + -1.1
3,161,563 + +1.3
3,161,755 + OHPLBJKB_03032 0.26 -1.3
3,161,755 + OHPLBJKB_03032 0.26 -0.3
3,161,756 - OHPLBJKB_03032 0.26 +1.3
3,161,801 + OHPLBJKB_03032 0.36 +0.3
3,161,801 + OHPLBJKB_03032 0.36 -1.7
3,161,801 + OHPLBJKB_03032 0.36 -0.7
3,162,157 - +1.5
3,162,169 + -0.7
3,162,169 + -0.5
3,162,170 - -1.3
3,162,170 - -0.9
3,162,170 - +0.2
3,162,179 + +0.1
3,162,387 - OHPLBJKB_03033 0.67 -0.7
3,162,387 - OHPLBJKB_03033 0.67 +0.1
3,162,397 + OHPLBJKB_03033 0.70 +0.3
3,162,398 - OHPLBJKB_03033 0.70 +0.6
3,162,398 - OHPLBJKB_03033 0.70 -0.4
3,162,451 - OHPLBJKB_03033 0.87 -1.7
3,162,706 - OHPLBJKB_03034 0.12 +0.1
3,162,706 - OHPLBJKB_03034 0.12 -0.0
3,162,706 - OHPLBJKB_03034 0.12 -3.7
3,162,707 + OHPLBJKB_03034 0.12 +0.5
3,162,707 + OHPLBJKB_03034 0.12 +0.1
3,162,708 - OHPLBJKB_03034 0.12 -0.2
3,162,708 - OHPLBJKB_03034 0.12 -0.8
3,162,708 - OHPLBJKB_03034 0.12 -1.1
3,162,726 - OHPLBJKB_03034 0.13 +0.8
3,162,742 - OHPLBJKB_03034 0.14 -0.2
3,162,758 + OHPLBJKB_03034 0.15 -0.2
3,162,759 - OHPLBJKB_03034 0.15 +0.1
3,162,762 - OHPLBJKB_03034 0.15 -0.0
3,162,762 - OHPLBJKB_03034 0.15 -1.7
3,162,762 - OHPLBJKB_03034 0.15 +0.4
3,162,796 - OHPLBJKB_03034 0.18 -0.0
3,162,809 + OHPLBJKB_03034 0.19 +0.3
3,162,810 - OHPLBJKB_03034 0.19 -0.0
3,162,815 + OHPLBJKB_03034 0.19 -0.2
3,162,815 + OHPLBJKB_03034 0.19 +0.8
3,162,815 + OHPLBJKB_03034 0.19 -0.5
3,162,816 - OHPLBJKB_03034 0.19 -1.6
3,162,816 - OHPLBJKB_03034 0.19 +1.1
3,162,863 + OHPLBJKB_03034 0.23 +0.1
3,162,863 + OHPLBJKB_03034 0.23 -1.0
3,162,863 + OHPLBJKB_03034 0.23 +1.1
3,162,863 + OHPLBJKB_03034 0.23 -0.8
3,162,863 + OHPLBJKB_03034 0.23 +1.5
3,162,956 + OHPLBJKB_03034 0.29 -1.5
3,162,957 - OHPLBJKB_03034 0.29 +0.1
3,162,957 - OHPLBJKB_03034 0.29 -0.4
3,162,970 - OHPLBJKB_03034 0.30 +0.4
3,163,036 + OHPLBJKB_03034 0.35 +0.1
3,163,036 + OHPLBJKB_03034 0.35 +0.6
3,163,037 - OHPLBJKB_03034 0.35 -0.0

Or see this region's nucleotide sequence