Strain Fitness in Escherichia coli HS(pFamp)R (ATCC 700891) around OHPLBJKB_02767

Experiment: Control_HSF

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntOHPLBJKB_02766 and OHPLBJKB_02767 are separated by 236 nucleotidesOHPLBJKB_02767 and OHPLBJKB_02768 are separated by 99 nucleotides OHPLBJKB_02766: OHPLBJKB_02766 - Pyruvate formate-lyase 1-activating enzyme, at 2,891,216 to 2,891,956 _02766 OHPLBJKB_02767: OHPLBJKB_02767 - Glutathione-regulated potassium-efflux system ancillary protein KefG, at 2,892,193 to 2,892,627 _02767 OHPLBJKB_02768: OHPLBJKB_02768 - HTH-type transcriptional regulator PgrR, at 2,892,727 to 2,893,635 _02768 Position (kb) 2892 2893Strain fitness (log2 ratio) -2 -1 0 1 2at 2891.321 kb on + strand, within OHPLBJKB_02766at 2891.322 kb on - strand, within OHPLBJKB_02766at 2891.322 kb on - strand, within OHPLBJKB_02766at 2891.368 kb on + strand, within OHPLBJKB_02766at 2891.369 kb on - strand, within OHPLBJKB_02766at 2891.413 kb on + strand, within OHPLBJKB_02766at 2891.519 kb on - strand, within OHPLBJKB_02766at 2891.583 kb on + strand, within OHPLBJKB_02766at 2891.864 kb on + strand, within OHPLBJKB_02766at 2891.942 kb on - strandat 2891.946 kb on + strandat 2891.946 kb on + strandat 2891.980 kb on - strandat 2892.039 kb on + strandat 2892.040 kb on - strandat 2892.042 kb on - strandat 2892.050 kb on + strandat 2892.051 kb on - strandat 2892.116 kb on + strandat 2892.116 kb on + strandat 2892.124 kb on + strandat 2892.124 kb on + strandat 2892.127 kb on + strandat 2892.182 kb on + strandat 2892.306 kb on + strand, within OHPLBJKB_02767at 2892.313 kb on + strand, within OHPLBJKB_02767at 2892.335 kb on - strand, within OHPLBJKB_02767at 2892.565 kb on - strand, within OHPLBJKB_02767at 2892.608 kb on + strandat 2892.609 kb on - strandat 2892.612 kb on + strandat 2892.708 kb on + strandat 2892.708 kb on + strandat 2892.738 kb on + strandat 2892.835 kb on - strand, within OHPLBJKB_02768at 2892.835 kb on - strand, within OHPLBJKB_02768at 2892.838 kb on - strand, within OHPLBJKB_02768at 2892.841 kb on - strand, within OHPLBJKB_02768at 2892.968 kb on + strand, within OHPLBJKB_02768at 2892.968 kb on + strand, within OHPLBJKB_02768at 2893.043 kb on + strand, within OHPLBJKB_02768at 2893.185 kb on + strand, within OHPLBJKB_02768at 2893.220 kb on + strand, within OHPLBJKB_02768at 2893.221 kb on - strand, within OHPLBJKB_02768at 2893.221 kb on - strand, within OHPLBJKB_02768at 2893.226 kb on + strand, within OHPLBJKB_02768at 2893.226 kb on + strand, within OHPLBJKB_02768at 2893.227 kb on - strand, within OHPLBJKB_02768at 2893.255 kb on + strand, within OHPLBJKB_02768at 2893.288 kb on - strand, within OHPLBJKB_02768at 2893.378 kb on - strand, within OHPLBJKB_02768at 2893.447 kb on + strand, within OHPLBJKB_02768at 2893.447 kb on + strand, within OHPLBJKB_02768at 2893.465 kb on + strand, within OHPLBJKB_02768at 2893.534 kb on + strand, within OHPLBJKB_02768at 2893.535 kb on - strand, within OHPLBJKB_02768at 2893.535 kb on - strand, within OHPLBJKB_02768at 2893.552 kb on + strandat 2893.552 kb on + strandat 2893.553 kb on - strandat 2893.553 kb on - strandat 2893.553 kb on - strandat 2893.553 kb on - strandat 2893.553 kb on - strandat 2893.553 kb on - strandat 2893.553 kb on - strandat 2893.554 kb on + strandat 2893.554 kb on + strandat 2893.555 kb on - strandat 2893.555 kb on - strandat 2893.555 kb on - strandat 2893.555 kb on - strandat 2893.555 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Control_HSF
remove
2,891,321 + OHPLBJKB_02766 0.14 +0.1
2,891,322 - OHPLBJKB_02766 0.14 +1.3
2,891,322 - OHPLBJKB_02766 0.14 +0.5
2,891,368 + OHPLBJKB_02766 0.21 -0.1
2,891,369 - OHPLBJKB_02766 0.21 +1.4
2,891,413 + OHPLBJKB_02766 0.27 +0.1
2,891,519 - OHPLBJKB_02766 0.41 +0.1
2,891,583 + OHPLBJKB_02766 0.50 +0.3
2,891,864 + OHPLBJKB_02766 0.87 -0.5
2,891,942 - +0.4
2,891,946 + -0.4
2,891,946 + -0.1
2,891,980 - -0.5
2,892,039 + +0.2
2,892,040 - -0.5
2,892,042 - +0.5
2,892,050 + +1.3
2,892,051 - +0.1
2,892,116 + -0.6
2,892,116 + +1.7
2,892,124 + -0.1
2,892,124 + +0.7
2,892,127 + -0.7
2,892,182 + +2.6
2,892,306 + OHPLBJKB_02767 0.26 -0.7
2,892,313 + OHPLBJKB_02767 0.28 -1.3
2,892,335 - OHPLBJKB_02767 0.33 +0.3
2,892,565 - OHPLBJKB_02767 0.86 +0.3
2,892,608 + -1.0
2,892,609 - -0.6
2,892,612 + +1.1
2,892,708 + -0.1
2,892,708 + +0.0
2,892,738 + -0.5
2,892,835 - OHPLBJKB_02768 0.12 -0.1
2,892,835 - OHPLBJKB_02768 0.12 +0.1
2,892,838 - OHPLBJKB_02768 0.12 +0.1
2,892,841 - OHPLBJKB_02768 0.13 +0.3
2,892,968 + OHPLBJKB_02768 0.27 -0.3
2,892,968 + OHPLBJKB_02768 0.27 +1.7
2,893,043 + OHPLBJKB_02768 0.35 -1.7
2,893,185 + OHPLBJKB_02768 0.50 -0.7
2,893,220 + OHPLBJKB_02768 0.54 +0.6
2,893,221 - OHPLBJKB_02768 0.54 -1.7
2,893,221 - OHPLBJKB_02768 0.54 -0.9
2,893,226 + OHPLBJKB_02768 0.55 +0.5
2,893,226 + OHPLBJKB_02768 0.55 +1.0
2,893,227 - OHPLBJKB_02768 0.55 -0.3
2,893,255 + OHPLBJKB_02768 0.58 +0.2
2,893,288 - OHPLBJKB_02768 0.62 +0.7
2,893,378 - OHPLBJKB_02768 0.72 +1.0
2,893,447 + OHPLBJKB_02768 0.79 +0.3
2,893,447 + OHPLBJKB_02768 0.79 +0.5
2,893,465 + OHPLBJKB_02768 0.81 -0.2
2,893,534 + OHPLBJKB_02768 0.89 +0.5
2,893,535 - OHPLBJKB_02768 0.89 +0.9
2,893,535 - OHPLBJKB_02768 0.89 +0.0
2,893,552 + -0.2
2,893,552 + -0.6
2,893,553 - -0.6
2,893,553 - +0.1
2,893,553 - -0.3
2,893,553 - -0.0
2,893,553 - -0.3
2,893,553 - -0.9
2,893,553 - -0.5
2,893,554 + -1.7
2,893,554 + +0.9
2,893,555 - -0.7
2,893,555 - -0.3
2,893,555 - -0.1
2,893,555 - -1.9
2,893,555 - -0.6

Or see this region's nucleotide sequence