Strain Fitness in Escherichia coli HS(pFamp)R (ATCC 700891) around OHPLBJKB_02578

Experiment: Control_HSF

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOHPLBJKB_02576 and OHPLBJKB_02577 are separated by 110 nucleotidesOHPLBJKB_02577 and OHPLBJKB_02578 are separated by 51 nucleotidesOHPLBJKB_02578 and OHPLBJKB_02579 are separated by 159 nucleotidesOHPLBJKB_02579 and OHPLBJKB_02580 are separated by 111 nucleotides OHPLBJKB_02576: OHPLBJKB_02576 - Phosphate acyltransferase, at 2,690,273 to 2,691,313 _02576 OHPLBJKB_02577: OHPLBJKB_02577 - 50S ribosomal protein L32, at 2,691,424 to 2,691,597 _02577 OHPLBJKB_02578: OHPLBJKB_02578 - Large ribosomal RNA subunit accumulation protein YceD, at 2,691,649 to 2,692,170 _02578 OHPLBJKB_02579: OHPLBJKB_02579 - Maf-like protein YceF, at 2,692,330 to 2,692,953 _02579 OHPLBJKB_02580: OHPLBJKB_02580 - Ribosomal large subunit pseudouridine synthase C, at 2,693,065 to 2,694,024 _02580 Position (kb) 2691 2692 2693Strain fitness (log2 ratio) -2 -1 0 1at 2690.710 kb on + strand, within OHPLBJKB_02576at 2690.712 kb on + strand, within OHPLBJKB_02576at 2690.712 kb on + strand, within OHPLBJKB_02576at 2690.713 kb on - strand, within OHPLBJKB_02576at 2690.713 kb on - strand, within OHPLBJKB_02576at 2690.713 kb on - strand, within OHPLBJKB_02576at 2690.720 kb on - strand, within OHPLBJKB_02576at 2690.735 kb on - strand, within OHPLBJKB_02576at 2690.759 kb on - strand, within OHPLBJKB_02576at 2690.878 kb on + strand, within OHPLBJKB_02576at 2690.878 kb on + strand, within OHPLBJKB_02576at 2690.878 kb on + strand, within OHPLBJKB_02576at 2690.878 kb on + strand, within OHPLBJKB_02576at 2690.878 kb on + strand, within OHPLBJKB_02576at 2690.879 kb on - strand, within OHPLBJKB_02576at 2690.904 kb on - strand, within OHPLBJKB_02576at 2690.943 kb on - strand, within OHPLBJKB_02576at 2690.945 kb on + strand, within OHPLBJKB_02576at 2690.945 kb on + strand, within OHPLBJKB_02576at 2690.991 kb on - strand, within OHPLBJKB_02576at 2690.991 kb on - strand, within OHPLBJKB_02576at 2691.194 kb on - strand, within OHPLBJKB_02576at 2691.194 kb on - strand, within OHPLBJKB_02576at 2691.201 kb on - strand, within OHPLBJKB_02576at 2691.201 kb on - strand, within OHPLBJKB_02576at 2691.321 kb on - strandat 2691.347 kb on - strandat 2691.426 kb on - strandat 2691.616 kb on - strandat 2691.655 kb on - strandat 2691.909 kb on - strand, within OHPLBJKB_02578at 2691.909 kb on - strand, within OHPLBJKB_02578at 2691.909 kb on - strand, within OHPLBJKB_02578at 2692.095 kb on - strand, within OHPLBJKB_02578at 2692.099 kb on - strand, within OHPLBJKB_02578at 2692.099 kb on - strand, within OHPLBJKB_02578at 2692.107 kb on - strand, within OHPLBJKB_02578at 2692.160 kb on - strandat 2692.193 kb on - strandat 2692.201 kb on - strandat 2692.243 kb on - strandat 2692.321 kb on + strandat 2692.349 kb on + strandat 2692.351 kb on + strandat 2692.351 kb on + strandat 2692.351 kb on + strandat 2692.352 kb on - strandat 2692.375 kb on - strandat 2692.385 kb on + strandat 2692.386 kb on - strandat 2692.560 kb on - strand, within OHPLBJKB_02579at 2692.564 kb on - strand, within OHPLBJKB_02579at 2692.564 kb on - strand, within OHPLBJKB_02579at 2692.580 kb on + strand, within OHPLBJKB_02579at 2692.580 kb on + strand, within OHPLBJKB_02579at 2692.580 kb on + strand, within OHPLBJKB_02579at 2692.580 kb on + strand, within OHPLBJKB_02579at 2692.581 kb on - strand, within OHPLBJKB_02579at 2692.581 kb on - strand, within OHPLBJKB_02579at 2692.581 kb on - strand, within OHPLBJKB_02579at 2692.581 kb on - strand, within OHPLBJKB_02579at 2692.675 kb on + strand, within OHPLBJKB_02579at 2692.675 kb on + strand, within OHPLBJKB_02579at 2692.675 kb on + strand, within OHPLBJKB_02579at 2692.675 kb on + strand, within OHPLBJKB_02579at 2692.695 kb on + strand, within OHPLBJKB_02579at 2692.776 kb on + strand, within OHPLBJKB_02579at 2692.780 kb on + strand, within OHPLBJKB_02579at 2692.780 kb on + strand, within OHPLBJKB_02579at 2692.780 kb on + strand, within OHPLBJKB_02579at 2692.781 kb on - strand, within OHPLBJKB_02579at 2692.781 kb on - strand, within OHPLBJKB_02579at 2692.781 kb on - strand, within OHPLBJKB_02579at 2692.815 kb on + strand, within OHPLBJKB_02579at 2692.821 kb on + strand, within OHPLBJKB_02579at 2692.821 kb on + strand, within OHPLBJKB_02579at 2692.843 kb on - strand, within OHPLBJKB_02579at 2692.860 kb on - strand, within OHPLBJKB_02579at 2692.920 kb on - strandat 2693.053 kb on + strandat 2693.053 kb on + strandat 2693.053 kb on + strandat 2693.053 kb on + strandat 2693.053 kb on + strandat 2693.053 kb on + strandat 2693.053 kb on + strandat 2693.054 kb on - strandat 2693.054 kb on - strandat 2693.055 kb on + strandat 2693.055 kb on + strandat 2693.055 kb on + strandat 2693.055 kb on + strandat 2693.055 kb on + strandat 2693.055 kb on + strandat 2693.055 kb on + strandat 2693.055 kb on + strandat 2693.055 kb on + strandat 2693.055 kb on + strandat 2693.055 kb on + strandat 2693.055 kb on + strandat 2693.055 kb on + strandat 2693.055 kb on + strandat 2693.055 kb on + strandat 2693.056 kb on - strandat 2693.056 kb on - strandat 2693.056 kb on - strandat 2693.056 kb on - strandat 2693.056 kb on - strandat 2693.056 kb on - strandat 2693.063 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Control_HSF
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2,690,710 + OHPLBJKB_02576 0.42 -1.1
2,690,712 + OHPLBJKB_02576 0.42 -0.1
2,690,712 + OHPLBJKB_02576 0.42 +0.6
2,690,713 - OHPLBJKB_02576 0.42 -0.9
2,690,713 - OHPLBJKB_02576 0.42 -1.8
2,690,713 - OHPLBJKB_02576 0.42 +1.2
2,690,720 - OHPLBJKB_02576 0.43 -0.1
2,690,735 - OHPLBJKB_02576 0.44 +0.0
2,690,759 - OHPLBJKB_02576 0.47 -0.4
2,690,878 + OHPLBJKB_02576 0.58 -0.8
2,690,878 + OHPLBJKB_02576 0.58 -0.1
2,690,878 + OHPLBJKB_02576 0.58 -0.5
2,690,878 + OHPLBJKB_02576 0.58 -0.8
2,690,878 + OHPLBJKB_02576 0.58 +0.5
2,690,879 - OHPLBJKB_02576 0.58 -0.3
2,690,904 - OHPLBJKB_02576 0.61 -0.7
2,690,943 - OHPLBJKB_02576 0.64 -1.4
2,690,945 + OHPLBJKB_02576 0.65 -0.9
2,690,945 + OHPLBJKB_02576 0.65 -0.4
2,690,991 - OHPLBJKB_02576 0.69 -0.8
2,690,991 - OHPLBJKB_02576 0.69 -1.5
2,691,194 - OHPLBJKB_02576 0.88 -1.3
2,691,194 - OHPLBJKB_02576 0.88 -0.8
2,691,201 - OHPLBJKB_02576 0.89 +1.6
2,691,201 - OHPLBJKB_02576 0.89 -0.0
2,691,321 - +0.8
2,691,347 - -0.9
2,691,426 - -1.1
2,691,616 - -1.4
2,691,655 - -1.1
2,691,909 - OHPLBJKB_02578 0.50 -0.4
2,691,909 - OHPLBJKB_02578 0.50 -0.9
2,691,909 - OHPLBJKB_02578 0.50 -1.1
2,692,095 - OHPLBJKB_02578 0.85 +0.0
2,692,099 - OHPLBJKB_02578 0.86 -0.8
2,692,099 - OHPLBJKB_02578 0.86 -1.1
2,692,107 - OHPLBJKB_02578 0.88 +0.8
2,692,160 - -1.1
2,692,193 - -1.1
2,692,201 - +1.2
2,692,243 - -0.1
2,692,321 + -0.6
2,692,349 + -0.4
2,692,351 + -0.8
2,692,351 + -1.1
2,692,351 + -0.4
2,692,352 - -0.8
2,692,375 - -0.0
2,692,385 + +0.9
2,692,386 - -0.6
2,692,560 - OHPLBJKB_02579 0.37 -0.1
2,692,564 - OHPLBJKB_02579 0.38 +1.0
2,692,564 - OHPLBJKB_02579 0.38 +0.2
2,692,580 + OHPLBJKB_02579 0.40 -0.1
2,692,580 + OHPLBJKB_02579 0.40 -1.9
2,692,580 + OHPLBJKB_02579 0.40 -0.2
2,692,580 + OHPLBJKB_02579 0.40 +0.5
2,692,581 - OHPLBJKB_02579 0.40 -0.0
2,692,581 - OHPLBJKB_02579 0.40 +0.4
2,692,581 - OHPLBJKB_02579 0.40 +0.2
2,692,581 - OHPLBJKB_02579 0.40 +1.1
2,692,675 + OHPLBJKB_02579 0.55 -2.5
2,692,675 + OHPLBJKB_02579 0.55 -0.4
2,692,675 + OHPLBJKB_02579 0.55 -0.0
2,692,675 + OHPLBJKB_02579 0.55 +0.4
2,692,695 + OHPLBJKB_02579 0.58 -0.3
2,692,776 + OHPLBJKB_02579 0.71 -0.6
2,692,780 + OHPLBJKB_02579 0.72 -0.5
2,692,780 + OHPLBJKB_02579 0.72 -0.2
2,692,780 + OHPLBJKB_02579 0.72 +0.3
2,692,781 - OHPLBJKB_02579 0.72 -1.2
2,692,781 - OHPLBJKB_02579 0.72 -0.5
2,692,781 - OHPLBJKB_02579 0.72 -0.4
2,692,815 + OHPLBJKB_02579 0.78 +1.5
2,692,821 + OHPLBJKB_02579 0.79 -1.0
2,692,821 + OHPLBJKB_02579 0.79 -1.1
2,692,843 - OHPLBJKB_02579 0.82 -0.1
2,692,860 - OHPLBJKB_02579 0.85 -0.6
2,692,920 - +1.6
2,693,053 + -1.1
2,693,053 + -0.2
2,693,053 + -1.4
2,693,053 + +0.3
2,693,053 + +0.4
2,693,053 + +0.2
2,693,053 + +0.4
2,693,054 - -0.2
2,693,054 - -2.1
2,693,055 + +0.4
2,693,055 + +0.9
2,693,055 + -0.4
2,693,055 + +0.2
2,693,055 + +0.1
2,693,055 + +0.0
2,693,055 + +0.2
2,693,055 + -0.9
2,693,055 + -2.0
2,693,055 + -0.1
2,693,055 + -0.9
2,693,055 + +0.6
2,693,055 + +0.9
2,693,055 + -0.1
2,693,055 + -0.6
2,693,056 - -0.2
2,693,056 - +1.1
2,693,056 - -1.4
2,693,056 - +0.0
2,693,056 - +0.0
2,693,056 - +0.7
2,693,063 + -0.8

Or see this region's nucleotide sequence