Strain Fitness in Escherichia coli HS(pFamp)R (ATCC 700891) around OHPLBJKB_02504

Experiment: Control_HSF

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOHPLBJKB_02503 and OHPLBJKB_02504 are separated by 145 nucleotidesOHPLBJKB_02504 and OHPLBJKB_02505 are separated by 45 nucleotides OHPLBJKB_02503: OHPLBJKB_02503 - Na(+)/H(+) antiporter NhaB, at 2,619,488 to 2,621,029 _02503 OHPLBJKB_02504: OHPLBJKB_02504 - Disulfide bond formation protein B, at 2,621,175 to 2,621,705 _02504 OHPLBJKB_02505: OHPLBJKB_02505 - Protein UmuC, at 2,621,751 to 2,623,019 _02505 Position (kb) 2621 2622Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2620.665 kb on - strand, within OHPLBJKB_02503at 2620.665 kb on - strand, within OHPLBJKB_02503at 2620.721 kb on + strand, within OHPLBJKB_02503at 2620.723 kb on + strand, within OHPLBJKB_02503at 2620.775 kb on + strand, within OHPLBJKB_02503at 2620.776 kb on - strand, within OHPLBJKB_02503at 2620.799 kb on - strand, within OHPLBJKB_02503at 2620.799 kb on - strand, within OHPLBJKB_02503at 2620.799 kb on - strand, within OHPLBJKB_02503at 2620.929 kb on - strandat 2620.972 kb on + strandat 2621.000 kb on - strandat 2621.047 kb on + strandat 2621.047 kb on + strandat 2621.047 kb on + strandat 2621.049 kb on + strandat 2621.049 kb on + strandat 2621.049 kb on + strandat 2621.049 kb on + strandat 2621.050 kb on - strandat 2621.050 kb on - strandat 2621.050 kb on - strandat 2621.050 kb on - strandat 2621.050 kb on - strandat 2621.050 kb on - strandat 2621.151 kb on + strandat 2621.152 kb on - strandat 2621.157 kb on + strandat 2621.174 kb on + strandat 2621.174 kb on + strandat 2621.175 kb on - strandat 2621.175 kb on - strandat 2621.175 kb on - strandat 2621.306 kb on + strand, within OHPLBJKB_02504at 2621.307 kb on - strand, within OHPLBJKB_02504at 2621.310 kb on + strand, within OHPLBJKB_02504at 2621.310 kb on + strand, within OHPLBJKB_02504at 2621.310 kb on + strand, within OHPLBJKB_02504at 2621.385 kb on + strand, within OHPLBJKB_02504at 2621.389 kb on + strand, within OHPLBJKB_02504at 2621.390 kb on - strand, within OHPLBJKB_02504at 2621.409 kb on + strand, within OHPLBJKB_02504at 2621.409 kb on + strand, within OHPLBJKB_02504at 2621.409 kb on + strand, within OHPLBJKB_02504at 2621.409 kb on + strand, within OHPLBJKB_02504at 2621.409 kb on + strand, within OHPLBJKB_02504at 2621.410 kb on - strand, within OHPLBJKB_02504at 2621.410 kb on - strand, within OHPLBJKB_02504at 2621.410 kb on - strand, within OHPLBJKB_02504at 2621.412 kb on - strand, within OHPLBJKB_02504at 2621.435 kb on - strand, within OHPLBJKB_02504at 2621.440 kb on - strand, within OHPLBJKB_02504at 2621.440 kb on - strand, within OHPLBJKB_02504at 2621.525 kb on + strand, within OHPLBJKB_02504at 2621.526 kb on - strand, within OHPLBJKB_02504at 2621.526 kb on - strand, within OHPLBJKB_02504at 2621.526 kb on - strand, within OHPLBJKB_02504at 2621.526 kb on - strand, within OHPLBJKB_02504at 2621.746 kb on + strandat 2621.746 kb on + strandat 2621.747 kb on - strandat 2621.748 kb on + strandat 2621.748 kb on + strandat 2621.748 kb on + strandat 2621.749 kb on - strandat 2621.752 kb on + strandat 2621.767 kb on - strandat 2621.786 kb on + strandat 2621.787 kb on - strandat 2621.788 kb on + strandat 2621.851 kb on + strandat 2621.852 kb on - strandat 2621.886 kb on - strand, within OHPLBJKB_02505at 2622.042 kb on - strand, within OHPLBJKB_02505at 2622.057 kb on - strand, within OHPLBJKB_02505at 2622.112 kb on + strand, within OHPLBJKB_02505at 2622.113 kb on - strand, within OHPLBJKB_02505at 2622.144 kb on - strand, within OHPLBJKB_02505at 2622.211 kb on + strand, within OHPLBJKB_02505at 2622.211 kb on + strand, within OHPLBJKB_02505at 2622.212 kb on - strand, within OHPLBJKB_02505at 2622.215 kb on + strand, within OHPLBJKB_02505at 2622.278 kb on + strand, within OHPLBJKB_02505at 2622.278 kb on + strand, within OHPLBJKB_02505at 2622.375 kb on - strand, within OHPLBJKB_02505at 2622.495 kb on + strand, within OHPLBJKB_02505at 2622.496 kb on - strand, within OHPLBJKB_02505at 2622.500 kb on + strand, within OHPLBJKB_02505at 2622.500 kb on + strand, within OHPLBJKB_02505at 2622.629 kb on + strand, within OHPLBJKB_02505

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Per-strain Table

Position Strand Gene LocusTag Fraction Control_HSF
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2,620,665 - OHPLBJKB_02503 0.76 -0.8
2,620,665 - OHPLBJKB_02503 0.76 +1.8
2,620,721 + OHPLBJKB_02503 0.80 -0.2
2,620,723 + OHPLBJKB_02503 0.80 -0.8
2,620,775 + OHPLBJKB_02503 0.83 -0.8
2,620,776 - OHPLBJKB_02503 0.84 -0.6
2,620,799 - OHPLBJKB_02503 0.85 +0.9
2,620,799 - OHPLBJKB_02503 0.85 -0.2
2,620,799 - OHPLBJKB_02503 0.85 +0.4
2,620,929 - -0.9
2,620,972 + -0.5
2,621,000 - -0.8
2,621,047 + +0.4
2,621,047 + -0.9
2,621,047 + -0.4
2,621,049 + -0.8
2,621,049 + +0.9
2,621,049 + -0.5
2,621,049 + +1.2
2,621,050 - -0.4
2,621,050 - -2.8
2,621,050 - +1.2
2,621,050 - -1.1
2,621,050 - -0.9
2,621,050 - -0.8
2,621,151 + +0.3
2,621,152 - -0.8
2,621,157 + -1.2
2,621,174 + +0.3
2,621,174 + +0.1
2,621,175 - -0.4
2,621,175 - -0.1
2,621,175 - -1.9
2,621,306 + OHPLBJKB_02504 0.25 -1.1
2,621,307 - OHPLBJKB_02504 0.25 -0.6
2,621,310 + OHPLBJKB_02504 0.25 -0.9
2,621,310 + OHPLBJKB_02504 0.25 -0.9
2,621,310 + OHPLBJKB_02504 0.25 -1.9
2,621,385 + OHPLBJKB_02504 0.40 -0.8
2,621,389 + OHPLBJKB_02504 0.40 -0.2
2,621,390 - OHPLBJKB_02504 0.40 -1.6
2,621,409 + OHPLBJKB_02504 0.44 -3.0
2,621,409 + OHPLBJKB_02504 0.44 -0.7
2,621,409 + OHPLBJKB_02504 0.44 +0.2
2,621,409 + OHPLBJKB_02504 0.44 +0.6
2,621,409 + OHPLBJKB_02504 0.44 -0.4
2,621,410 - OHPLBJKB_02504 0.44 +0.2
2,621,410 - OHPLBJKB_02504 0.44 +0.6
2,621,410 - OHPLBJKB_02504 0.44 +0.0
2,621,412 - OHPLBJKB_02504 0.45 -0.8
2,621,435 - OHPLBJKB_02504 0.49 -1.1
2,621,440 - OHPLBJKB_02504 0.50 +2.2
2,621,440 - OHPLBJKB_02504 0.50 -0.6
2,621,525 + OHPLBJKB_02504 0.66 -2.4
2,621,526 - OHPLBJKB_02504 0.66 +0.2
2,621,526 - OHPLBJKB_02504 0.66 -0.8
2,621,526 - OHPLBJKB_02504 0.66 -1.6
2,621,526 - OHPLBJKB_02504 0.66 +0.2
2,621,746 + -0.8
2,621,746 + -1.8
2,621,747 - -0.3
2,621,748 + +0.6
2,621,748 + -0.2
2,621,748 + +0.2
2,621,749 - -0.1
2,621,752 + +0.1
2,621,767 - +0.6
2,621,786 + -1.0
2,621,787 - -1.0
2,621,788 + -0.3
2,621,851 + -0.4
2,621,852 - -0.6
2,621,886 - OHPLBJKB_02505 0.11 +0.2
2,622,042 - OHPLBJKB_02505 0.23 +0.8
2,622,057 - OHPLBJKB_02505 0.24 -0.2
2,622,112 + OHPLBJKB_02505 0.28 -1.4
2,622,113 - OHPLBJKB_02505 0.29 -0.6
2,622,144 - OHPLBJKB_02505 0.31 +0.0
2,622,211 + OHPLBJKB_02505 0.36 +0.2
2,622,211 + OHPLBJKB_02505 0.36 -0.5
2,622,212 - OHPLBJKB_02505 0.36 -0.4
2,622,215 + OHPLBJKB_02505 0.37 -0.5
2,622,278 + OHPLBJKB_02505 0.42 -1.6
2,622,278 + OHPLBJKB_02505 0.42 -0.4
2,622,375 - OHPLBJKB_02505 0.49 -0.1
2,622,495 + OHPLBJKB_02505 0.59 -0.2
2,622,496 - OHPLBJKB_02505 0.59 +0.1
2,622,500 + OHPLBJKB_02505 0.59 -0.3
2,622,500 + OHPLBJKB_02505 0.59 -0.1
2,622,629 + OHPLBJKB_02505 0.69 -0.7

Or see this region's nucleotide sequence