Strain Fitness in Escherichia coli HS(pFamp)R (ATCC 700891) around OHPLBJKB_02482

Experiment: Control_HSF

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOHPLBJKB_02481 and OHPLBJKB_02482 are separated by 54 nucleotidesOHPLBJKB_02482 and OHPLBJKB_02483 are separated by 277 nucleotidesOHPLBJKB_02483 and OHPLBJKB_02484 are separated by 116 nucleotides OHPLBJKB_02481: OHPLBJKB_02481 - C4-dicarboxylic acid transporter DauA, at 2,593,429 to 2,595,081 _02481 OHPLBJKB_02482: OHPLBJKB_02482 - hypothetical protein, at 2,595,136 to 2,595,414 _02482 OHPLBJKB_02483: OHPLBJKB_02483 - Peptidyl-tRNA hydrolase, at 2,595,692 to 2,596,276 _02483 OHPLBJKB_02484: OHPLBJKB_02484 - Ribosome-binding ATPase YchF, at 2,596,393 to 2,597,484 _02484 Position (kb) 2595 2596Strain fitness (log2 ratio) -2 -1 0 1 2at 2594.149 kb on - strand, within OHPLBJKB_02481at 2594.307 kb on + strand, within OHPLBJKB_02481at 2594.365 kb on - strand, within OHPLBJKB_02481at 2594.368 kb on - strand, within OHPLBJKB_02481at 2594.389 kb on - strand, within OHPLBJKB_02481at 2594.391 kb on + strand, within OHPLBJKB_02481at 2594.583 kb on + strand, within OHPLBJKB_02481at 2594.583 kb on + strand, within OHPLBJKB_02481at 2594.584 kb on - strand, within OHPLBJKB_02481at 2594.715 kb on + strand, within OHPLBJKB_02481at 2594.733 kb on + strand, within OHPLBJKB_02481at 2594.733 kb on + strand, within OHPLBJKB_02481at 2594.733 kb on + strand, within OHPLBJKB_02481at 2594.733 kb on + strand, within OHPLBJKB_02481at 2594.733 kb on + strand, within OHPLBJKB_02481at 2594.734 kb on - strand, within OHPLBJKB_02481at 2594.734 kb on - strand, within OHPLBJKB_02481at 2594.734 kb on - strand, within OHPLBJKB_02481at 2594.759 kb on + strand, within OHPLBJKB_02481at 2594.759 kb on + strand, within OHPLBJKB_02481at 2594.897 kb on + strand, within OHPLBJKB_02481at 2595.080 kb on - strandat 2595.080 kb on - strandat 2595.080 kb on - strandat 2595.084 kb on - strandat 2595.130 kb on + strandat 2595.130 kb on + strandat 2595.131 kb on - strandat 2595.131 kb on - strandat 2595.137 kb on + strandat 2595.141 kb on + strandat 2595.141 kb on + strandat 2595.141 kb on + strandat 2595.141 kb on + strandat 2595.141 kb on + strandat 2595.142 kb on - strandat 2595.142 kb on - strandat 2595.180 kb on - strand, within OHPLBJKB_02482at 2595.272 kb on - strand, within OHPLBJKB_02482at 2595.294 kb on - strand, within OHPLBJKB_02482at 2595.303 kb on + strand, within OHPLBJKB_02482at 2595.304 kb on - strand, within OHPLBJKB_02482at 2595.306 kb on + strand, within OHPLBJKB_02482at 2595.307 kb on - strand, within OHPLBJKB_02482at 2595.414 kb on + strandat 2595.414 kb on + strandat 2595.414 kb on + strandat 2595.415 kb on - strandat 2595.415 kb on - strandat 2595.466 kb on - strandat 2595.466 kb on - strandat 2595.466 kb on - strandat 2595.471 kb on + strandat 2595.471 kb on + strandat 2595.472 kb on - strandat 2595.476 kb on + strandat 2595.479 kb on - strandat 2595.497 kb on + strandat 2595.498 kb on - strandat 2595.498 kb on - strandat 2595.519 kb on + strandat 2595.520 kb on - strandat 2595.520 kb on - strandat 2595.529 kb on - strandat 2595.551 kb on - strandat 2595.551 kb on - strandat 2595.598 kb on + strandat 2595.655 kb on + strandat 2595.666 kb on + strandat 2595.670 kb on + strandat 2595.670 kb on + strandat 2595.670 kb on + strandat 2595.670 kb on + strandat 2595.670 kb on + strandat 2596.223 kb on - strandat 2596.275 kb on - strandat 2596.311 kb on + strandat 2596.312 kb on - strandat 2596.313 kb on + strandat 2596.313 kb on + strandat 2596.354 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Control_HSF
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2,594,149 - OHPLBJKB_02481 0.44 -1.4
2,594,307 + OHPLBJKB_02481 0.53 +0.2
2,594,365 - OHPLBJKB_02481 0.57 +0.1
2,594,368 - OHPLBJKB_02481 0.57 -0.1
2,594,389 - OHPLBJKB_02481 0.58 +0.6
2,594,391 + OHPLBJKB_02481 0.58 -0.1
2,594,583 + OHPLBJKB_02481 0.70 +0.7
2,594,583 + OHPLBJKB_02481 0.70 -0.6
2,594,584 - OHPLBJKB_02481 0.70 +0.6
2,594,715 + OHPLBJKB_02481 0.78 +0.1
2,594,733 + OHPLBJKB_02481 0.79 +0.7
2,594,733 + OHPLBJKB_02481 0.79 +0.7
2,594,733 + OHPLBJKB_02481 0.79 +0.9
2,594,733 + OHPLBJKB_02481 0.79 -0.0
2,594,733 + OHPLBJKB_02481 0.79 +0.4
2,594,734 - OHPLBJKB_02481 0.79 +0.7
2,594,734 - OHPLBJKB_02481 0.79 -0.8
2,594,734 - OHPLBJKB_02481 0.79 +0.2
2,594,759 + OHPLBJKB_02481 0.80 +0.1
2,594,759 + OHPLBJKB_02481 0.80 +0.5
2,594,897 + OHPLBJKB_02481 0.89 -0.1
2,595,080 - +0.6
2,595,080 - -0.4
2,595,080 - +2.6
2,595,084 - -0.2
2,595,130 + +0.0
2,595,130 + +0.4
2,595,131 - -0.5
2,595,131 - +1.2
2,595,137 + -0.8
2,595,141 + +0.4
2,595,141 + -2.4
2,595,141 + +0.6
2,595,141 + -0.6
2,595,141 + +1.0
2,595,142 - -0.2
2,595,142 - -0.1
2,595,180 - OHPLBJKB_02482 0.16 -0.4
2,595,272 - OHPLBJKB_02482 0.49 +0.1
2,595,294 - OHPLBJKB_02482 0.57 -1.5
2,595,303 + OHPLBJKB_02482 0.60 -1.4
2,595,304 - OHPLBJKB_02482 0.60 -2.5
2,595,306 + OHPLBJKB_02482 0.61 -1.4
2,595,307 - OHPLBJKB_02482 0.61 +0.6
2,595,414 + +0.9
2,595,414 + -1.4
2,595,414 + -1.1
2,595,415 - +0.2
2,595,415 - -0.3
2,595,466 - -1.1
2,595,466 - -0.0
2,595,466 - +0.4
2,595,471 + +1.1
2,595,471 + +0.6
2,595,472 - +0.9
2,595,476 + +0.2
2,595,479 - +0.0
2,595,497 + +1.0
2,595,498 - -0.6
2,595,498 - -0.5
2,595,519 + -0.8
2,595,520 - +0.2
2,595,520 - +1.2
2,595,529 - -0.1
2,595,551 - +0.6
2,595,551 - +1.2
2,595,598 + -0.3
2,595,655 + -0.2
2,595,666 + -1.0
2,595,670 + -1.1
2,595,670 + +1.2
2,595,670 + -0.1
2,595,670 + +1.4
2,595,670 + +0.9
2,596,223 - +0.2
2,596,275 - +0.3
2,596,311 + -0.4
2,596,312 - -0.6
2,596,313 + -0.1
2,596,313 + -0.0
2,596,354 + +0.9

Or see this region's nucleotide sequence