Strain Fitness in Escherichia coli HS(pFamp)R (ATCC 700891) around OHPLBJKB_02475

Experiment: Control_HSF

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOHPLBJKB_02473 and OHPLBJKB_02474 are separated by 3 nucleotidesOHPLBJKB_02474 and OHPLBJKB_02475 overlap by 4 nucleotidesOHPLBJKB_02475 and OHPLBJKB_02476 overlap by 1 nucleotides OHPLBJKB_02473: OHPLBJKB_02473 - hypothetical protein, at 2,586,076 to 2,586,885 _02473 OHPLBJKB_02474: OHPLBJKB_02474 - Protein YchQ, at 2,586,889 to 2,587,281 _02474 OHPLBJKB_02475: OHPLBJKB_02475 - Release factor glutamine methyltransferase, at 2,587,278 to 2,588,111 _02475 OHPLBJKB_02476: OHPLBJKB_02476 - Peptide chain release factor RF1, at 2,588,111 to 2,589,193 _02476 Position (kb) 2587 2588 2589Strain fitness (log2 ratio) -1 0 1at 2586.331 kb on - strand, within OHPLBJKB_02473at 2586.361 kb on - strand, within OHPLBJKB_02473at 2586.425 kb on - strand, within OHPLBJKB_02473at 2586.425 kb on - strand, within OHPLBJKB_02473at 2586.435 kb on + strand, within OHPLBJKB_02473at 2586.435 kb on + strand, within OHPLBJKB_02473at 2586.435 kb on + strand, within OHPLBJKB_02473at 2586.435 kb on + strand, within OHPLBJKB_02473at 2586.435 kb on + strand, within OHPLBJKB_02473at 2586.435 kb on + strand, within OHPLBJKB_02473at 2586.435 kb on + strand, within OHPLBJKB_02473at 2586.436 kb on - strand, within OHPLBJKB_02473at 2586.468 kb on + strand, within OHPLBJKB_02473at 2586.571 kb on + strand, within OHPLBJKB_02473at 2586.584 kb on - strand, within OHPLBJKB_02473at 2586.584 kb on - strand, within OHPLBJKB_02473at 2586.584 kb on - strand, within OHPLBJKB_02473at 2586.650 kb on + strand, within OHPLBJKB_02473at 2586.721 kb on + strand, within OHPLBJKB_02473at 2586.722 kb on - strand, within OHPLBJKB_02473at 2586.759 kb on + strand, within OHPLBJKB_02473at 2586.782 kb on + strand, within OHPLBJKB_02473at 2586.856 kb on - strandat 2586.858 kb on + strandat 2586.858 kb on + strandat 2586.904 kb on + strandat 2586.905 kb on - strandat 2586.935 kb on + strand, within OHPLBJKB_02474at 2586.936 kb on - strand, within OHPLBJKB_02474at 2586.936 kb on - strand, within OHPLBJKB_02474at 2586.936 kb on - strand, within OHPLBJKB_02474at 2586.991 kb on - strand, within OHPLBJKB_02474at 2586.999 kb on - strand, within OHPLBJKB_02474at 2587.011 kb on + strand, within OHPLBJKB_02474at 2587.011 kb on + strand, within OHPLBJKB_02474at 2587.011 kb on + strand, within OHPLBJKB_02474at 2587.012 kb on - strand, within OHPLBJKB_02474at 2587.028 kb on + strand, within OHPLBJKB_02474at 2587.028 kb on + strand, within OHPLBJKB_02474at 2587.029 kb on - strand, within OHPLBJKB_02474at 2587.029 kb on - strand, within OHPLBJKB_02474at 2587.098 kb on + strand, within OHPLBJKB_02474at 2587.127 kb on - strand, within OHPLBJKB_02474at 2587.210 kb on + strand, within OHPLBJKB_02474at 2587.210 kb on + strand, within OHPLBJKB_02474at 2587.220 kb on - strand, within OHPLBJKB_02474at 2587.242 kb on + strandat 2587.243 kb on - strandat 2587.246 kb on - strandat 2587.246 kb on - strandat 2587.246 kb on - strandat 2587.266 kb on + strandat 2587.321 kb on + strandat 2587.348 kb on + strandat 2587.362 kb on - strand, within OHPLBJKB_02475at 2587.455 kb on - strand, within OHPLBJKB_02475at 2587.556 kb on - strand, within OHPLBJKB_02475at 2587.632 kb on - strand, within OHPLBJKB_02475at 2587.659 kb on - strand, within OHPLBJKB_02475at 2587.689 kb on - strand, within OHPLBJKB_02475at 2587.695 kb on + strand, within OHPLBJKB_02475at 2588.105 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Control_HSF
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2,586,331 - OHPLBJKB_02473 0.31 +0.3
2,586,361 - OHPLBJKB_02473 0.35 +0.9
2,586,425 - OHPLBJKB_02473 0.43 +1.1
2,586,425 - OHPLBJKB_02473 0.43 -0.0
2,586,435 + OHPLBJKB_02473 0.44 +0.6
2,586,435 + OHPLBJKB_02473 0.44 -0.5
2,586,435 + OHPLBJKB_02473 0.44 -0.2
2,586,435 + OHPLBJKB_02473 0.44 -1.1
2,586,435 + OHPLBJKB_02473 0.44 -0.8
2,586,435 + OHPLBJKB_02473 0.44 -0.4
2,586,435 + OHPLBJKB_02473 0.44 +0.2
2,586,436 - OHPLBJKB_02473 0.44 +1.2
2,586,468 + OHPLBJKB_02473 0.48 -0.8
2,586,571 + OHPLBJKB_02473 0.61 -0.8
2,586,584 - OHPLBJKB_02473 0.63 +0.1
2,586,584 - OHPLBJKB_02473 0.63 +0.8
2,586,584 - OHPLBJKB_02473 0.63 +1.0
2,586,650 + OHPLBJKB_02473 0.71 +0.4
2,586,721 + OHPLBJKB_02473 0.80 -0.4
2,586,722 - OHPLBJKB_02473 0.80 +0.2
2,586,759 + OHPLBJKB_02473 0.84 -0.6
2,586,782 + OHPLBJKB_02473 0.87 -0.8
2,586,856 - -0.7
2,586,858 + +1.6
2,586,858 + -0.8
2,586,904 + -0.9
2,586,905 - -1.5
2,586,935 + OHPLBJKB_02474 0.12 +0.2
2,586,936 - OHPLBJKB_02474 0.12 +1.0
2,586,936 - OHPLBJKB_02474 0.12 -0.4
2,586,936 - OHPLBJKB_02474 0.12 +1.1
2,586,991 - OHPLBJKB_02474 0.26 +0.5
2,586,999 - OHPLBJKB_02474 0.28 -1.1
2,587,011 + OHPLBJKB_02474 0.31 +0.2
2,587,011 + OHPLBJKB_02474 0.31 -0.9
2,587,011 + OHPLBJKB_02474 0.31 -0.2
2,587,012 - OHPLBJKB_02474 0.31 +0.2
2,587,028 + OHPLBJKB_02474 0.35 +0.4
2,587,028 + OHPLBJKB_02474 0.35 -0.8
2,587,029 - OHPLBJKB_02474 0.36 -0.6
2,587,029 - OHPLBJKB_02474 0.36 +0.8
2,587,098 + OHPLBJKB_02474 0.53 +0.2
2,587,127 - OHPLBJKB_02474 0.61 -0.9
2,587,210 + OHPLBJKB_02474 0.82 -0.4
2,587,210 + OHPLBJKB_02474 0.82 -0.1
2,587,220 - OHPLBJKB_02474 0.84 -0.6
2,587,242 + -0.0
2,587,243 - +0.2
2,587,246 - -0.1
2,587,246 - -0.7
2,587,246 - +0.2
2,587,266 + +0.2
2,587,321 + +0.6
2,587,348 + -0.4
2,587,362 - OHPLBJKB_02475 0.10 -0.8
2,587,455 - OHPLBJKB_02475 0.21 -0.5
2,587,556 - OHPLBJKB_02475 0.33 -1.4
2,587,632 - OHPLBJKB_02475 0.42 -1.4
2,587,659 - OHPLBJKB_02475 0.46 -0.4
2,587,689 - OHPLBJKB_02475 0.49 +0.2
2,587,695 + OHPLBJKB_02475 0.50 +1.2
2,588,105 - +0.3

Or see this region's nucleotide sequence