Strain Fitness in Escherichia coli HS(pFamp)R (ATCC 700891) around OHPLBJKB_02471

Experiment: Control_HSF

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOHPLBJKB_02469 and OHPLBJKB_02470 are separated by 427 nucleotidesOHPLBJKB_02470 and OHPLBJKB_02471 are separated by 427 nucleotidesOHPLBJKB_02471 and OHPLBJKB_02472 are separated by 146 nucleotides OHPLBJKB_02469: OHPLBJKB_02469 - Small toxic polypeptide LdrA, at 2,583,862 to 2,583,969 _02469 OHPLBJKB_02470: OHPLBJKB_02470 - Small toxic polypeptide LdrA, at 2,584,397 to 2,584,504 _02470 OHPLBJKB_02471: OHPLBJKB_02471 - Small toxic polypeptide LdrA, at 2,584,932 to 2,585,039 _02471 OHPLBJKB_02472: OHPLBJKB_02472 - 2-dehydro-3-deoxyphosphooctonate aldolase, at 2,585,186 to 2,586,040 _02472 Position (kb) 2584 2585 2586Strain fitness (log2 ratio) -1 0 1at 2583.968 kb on - strandat 2583.968 kb on - strandat 2584.075 kb on + strandat 2584.607 kb on - strandat 2584.662 kb on - strandat 2584.662 kb on - strandat 2584.736 kb on + strandat 2584.736 kb on + strandat 2584.736 kb on + strandat 2584.737 kb on - strandat 2584.737 kb on - strandat 2584.916 kb on - strandat 2584.916 kb on - strandat 2584.931 kb on + strandat 2584.998 kb on - strand, within OHPLBJKB_02471

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Per-strain Table

Position Strand Gene LocusTag Fraction Control_HSF
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2,583,968 - +1.1
2,583,968 - +0.1
2,584,075 + -0.2
2,584,607 - +0.1
2,584,662 - -0.8
2,584,662 - +0.6
2,584,736 + -0.2
2,584,736 + -0.8
2,584,736 + -1.4
2,584,737 - -0.9
2,584,737 - +1.2
2,584,916 - +0.4
2,584,916 - +0.6
2,584,931 + -0.9
2,584,998 - OHPLBJKB_02471 0.61 -0.7

Or see this region's nucleotide sequence