Experiment: Control_HSF
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OHPLBJKB_02423 and OHPLBJKB_02424 are separated by 380 nucleotides OHPLBJKB_02424 and OHPLBJKB_02425 are separated by 85 nucleotides OHPLBJKB_02425 and OHPLBJKB_02426 are separated by 45 nucleotides OHPLBJKB_02426 and OHPLBJKB_02427 are separated by 59 nucleotides
OHPLBJKB_02423: OHPLBJKB_02423 - Tryptophan synthase alpha chain, at 2,538,365 to 2,539,171
_02423
OHPLBJKB_02424: OHPLBJKB_02424 - hypothetical protein, at 2,539,552 to 2,539,731
_02424
OHPLBJKB_02425: OHPLBJKB_02425 - Protein YciF, at 2,539,817 to 2,540,317
_02425
OHPLBJKB_02426: OHPLBJKB_02426 - Protein YciE, at 2,540,363 to 2,540,869
_02426
OHPLBJKB_02427: OHPLBJKB_02427 - Outer membrane protein W, at 2,540,929 to 2,541,567
_02427
Position (kb)
2539
2540
2541 Strain fitness (log2 ratio)
-2
-1
0
1 at 2538.887 kb on + strand, within OHPLBJKB_02423 at 2538.887 kb on + strand, within OHPLBJKB_02423 at 2538.887 kb on + strand, within OHPLBJKB_02423 at 2538.887 kb on + strand, within OHPLBJKB_02423 at 2538.888 kb on - strand, within OHPLBJKB_02423 at 2538.888 kb on - strand, within OHPLBJKB_02423 at 2538.972 kb on - strand, within OHPLBJKB_02423 at 2539.024 kb on - strand, within OHPLBJKB_02423 at 2539.096 kb on + strand at 2539.245 kb on - strand at 2539.549 kb on - strand at 2540.071 kb on + strand, within OHPLBJKB_02425 at 2540.150 kb on + strand, within OHPLBJKB_02425 at 2540.196 kb on + strand, within OHPLBJKB_02425 at 2540.197 kb on - strand, within OHPLBJKB_02425 at 2540.293 kb on + strand at 2540.462 kb on - strand, within OHPLBJKB_02426 at 2540.476 kb on - strand, within OHPLBJKB_02426 at 2540.501 kb on - strand, within OHPLBJKB_02426 at 2540.693 kb on + strand, within OHPLBJKB_02426 at 2541.010 kb on - strand, within OHPLBJKB_02427 at 2541.012 kb on - strand, within OHPLBJKB_02427 at 2541.012 kb on - strand, within OHPLBJKB_02427 at 2541.081 kb on - strand, within OHPLBJKB_02427 at 2541.162 kb on + strand, within OHPLBJKB_02427 at 2541.172 kb on - strand, within OHPLBJKB_02427 at 2541.188 kb on + strand, within OHPLBJKB_02427 at 2541.188 kb on + strand, within OHPLBJKB_02427 at 2541.188 kb on + strand, within OHPLBJKB_02427 at 2541.188 kb on + strand, within OHPLBJKB_02427 at 2541.188 kb on + strand, within OHPLBJKB_02427 at 2541.189 kb on - strand, within OHPLBJKB_02427 at 2541.189 kb on - strand, within OHPLBJKB_02427 at 2541.189 kb on - strand, within OHPLBJKB_02427 at 2541.196 kb on - strand, within OHPLBJKB_02427 at 2541.210 kb on - strand, within OHPLBJKB_02427 at 2541.243 kb on - strand, within OHPLBJKB_02427
Per-strain Table
Position Strand Gene LocusTag Fraction Control_HSF remove 2,538,887 + OHPLBJKB_02423 0.65 -0.1 2,538,887 + OHPLBJKB_02423 0.65 -0.6 2,538,887 + OHPLBJKB_02423 0.65 +1.2 2,538,887 + OHPLBJKB_02423 0.65 +1.2 2,538,888 - OHPLBJKB_02423 0.65 -0.6 2,538,888 - OHPLBJKB_02423 0.65 -1.9 2,538,972 - OHPLBJKB_02423 0.75 +0.6 2,539,024 - OHPLBJKB_02423 0.82 +1.7 2,539,096 + +0.6 2,539,245 - -0.1 2,539,549 - +0.8 2,540,071 + OHPLBJKB_02425 0.51 -0.6 2,540,150 + OHPLBJKB_02425 0.66 -0.8 2,540,196 + OHPLBJKB_02425 0.76 -1.4 2,540,197 - OHPLBJKB_02425 0.76 -1.0 2,540,293 + +0.2 2,540,462 - OHPLBJKB_02426 0.20 -0.1 2,540,476 - OHPLBJKB_02426 0.22 -0.2 2,540,501 - OHPLBJKB_02426 0.27 -0.6 2,540,693 + OHPLBJKB_02426 0.65 -1.3 2,541,010 - OHPLBJKB_02427 0.13 +1.6 2,541,012 - OHPLBJKB_02427 0.13 +0.9 2,541,012 - OHPLBJKB_02427 0.13 +0.5 2,541,081 - OHPLBJKB_02427 0.24 -0.8 2,541,162 + OHPLBJKB_02427 0.36 -1.1 2,541,172 - OHPLBJKB_02427 0.38 +0.2 2,541,188 + OHPLBJKB_02427 0.41 -0.8 2,541,188 + OHPLBJKB_02427 0.41 -1.4 2,541,188 + OHPLBJKB_02427 0.41 -0.5 2,541,188 + OHPLBJKB_02427 0.41 -0.6 2,541,188 + OHPLBJKB_02427 0.41 -0.5 2,541,189 - OHPLBJKB_02427 0.41 -0.0 2,541,189 - OHPLBJKB_02427 0.41 -0.0 2,541,189 - OHPLBJKB_02427 0.41 -0.2 2,541,196 - OHPLBJKB_02427 0.42 -1.0 2,541,210 - OHPLBJKB_02427 0.44 -0.4 2,541,243 - OHPLBJKB_02427 0.49 +0.4
Or see this region's nucleotide sequence