Strain Fitness in Escherichia coli HS(pFamp)R (ATCC 700891) around OHPLBJKB_02425

Experiment: Control_HSF

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOHPLBJKB_02423 and OHPLBJKB_02424 are separated by 380 nucleotidesOHPLBJKB_02424 and OHPLBJKB_02425 are separated by 85 nucleotidesOHPLBJKB_02425 and OHPLBJKB_02426 are separated by 45 nucleotidesOHPLBJKB_02426 and OHPLBJKB_02427 are separated by 59 nucleotides OHPLBJKB_02423: OHPLBJKB_02423 - Tryptophan synthase alpha chain, at 2,538,365 to 2,539,171 _02423 OHPLBJKB_02424: OHPLBJKB_02424 - hypothetical protein, at 2,539,552 to 2,539,731 _02424 OHPLBJKB_02425: OHPLBJKB_02425 - Protein YciF, at 2,539,817 to 2,540,317 _02425 OHPLBJKB_02426: OHPLBJKB_02426 - Protein YciE, at 2,540,363 to 2,540,869 _02426 OHPLBJKB_02427: OHPLBJKB_02427 - Outer membrane protein W, at 2,540,929 to 2,541,567 _02427 Position (kb) 2539 2540 2541Strain fitness (log2 ratio) -2 -1 0 1at 2538.887 kb on + strand, within OHPLBJKB_02423at 2538.887 kb on + strand, within OHPLBJKB_02423at 2538.887 kb on + strand, within OHPLBJKB_02423at 2538.887 kb on + strand, within OHPLBJKB_02423at 2538.888 kb on - strand, within OHPLBJKB_02423at 2538.888 kb on - strand, within OHPLBJKB_02423at 2538.972 kb on - strand, within OHPLBJKB_02423at 2539.024 kb on - strand, within OHPLBJKB_02423at 2539.096 kb on + strandat 2539.245 kb on - strandat 2539.549 kb on - strandat 2540.071 kb on + strand, within OHPLBJKB_02425at 2540.150 kb on + strand, within OHPLBJKB_02425at 2540.196 kb on + strand, within OHPLBJKB_02425at 2540.197 kb on - strand, within OHPLBJKB_02425at 2540.293 kb on + strandat 2540.462 kb on - strand, within OHPLBJKB_02426at 2540.476 kb on - strand, within OHPLBJKB_02426at 2540.501 kb on - strand, within OHPLBJKB_02426at 2540.693 kb on + strand, within OHPLBJKB_02426at 2541.010 kb on - strand, within OHPLBJKB_02427at 2541.012 kb on - strand, within OHPLBJKB_02427at 2541.012 kb on - strand, within OHPLBJKB_02427at 2541.081 kb on - strand, within OHPLBJKB_02427at 2541.162 kb on + strand, within OHPLBJKB_02427at 2541.172 kb on - strand, within OHPLBJKB_02427at 2541.188 kb on + strand, within OHPLBJKB_02427at 2541.188 kb on + strand, within OHPLBJKB_02427at 2541.188 kb on + strand, within OHPLBJKB_02427at 2541.188 kb on + strand, within OHPLBJKB_02427at 2541.188 kb on + strand, within OHPLBJKB_02427at 2541.189 kb on - strand, within OHPLBJKB_02427at 2541.189 kb on - strand, within OHPLBJKB_02427at 2541.189 kb on - strand, within OHPLBJKB_02427at 2541.196 kb on - strand, within OHPLBJKB_02427at 2541.210 kb on - strand, within OHPLBJKB_02427at 2541.243 kb on - strand, within OHPLBJKB_02427

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Per-strain Table

Position Strand Gene LocusTag Fraction Control_HSF
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2,538,887 + OHPLBJKB_02423 0.65 -0.1
2,538,887 + OHPLBJKB_02423 0.65 -0.6
2,538,887 + OHPLBJKB_02423 0.65 +1.2
2,538,887 + OHPLBJKB_02423 0.65 +1.2
2,538,888 - OHPLBJKB_02423 0.65 -0.6
2,538,888 - OHPLBJKB_02423 0.65 -1.9
2,538,972 - OHPLBJKB_02423 0.75 +0.6
2,539,024 - OHPLBJKB_02423 0.82 +1.7
2,539,096 + +0.6
2,539,245 - -0.1
2,539,549 - +0.8
2,540,071 + OHPLBJKB_02425 0.51 -0.6
2,540,150 + OHPLBJKB_02425 0.66 -0.8
2,540,196 + OHPLBJKB_02425 0.76 -1.4
2,540,197 - OHPLBJKB_02425 0.76 -1.0
2,540,293 + +0.2
2,540,462 - OHPLBJKB_02426 0.20 -0.1
2,540,476 - OHPLBJKB_02426 0.22 -0.2
2,540,501 - OHPLBJKB_02426 0.27 -0.6
2,540,693 + OHPLBJKB_02426 0.65 -1.3
2,541,010 - OHPLBJKB_02427 0.13 +1.6
2,541,012 - OHPLBJKB_02427 0.13 +0.9
2,541,012 - OHPLBJKB_02427 0.13 +0.5
2,541,081 - OHPLBJKB_02427 0.24 -0.8
2,541,162 + OHPLBJKB_02427 0.36 -1.1
2,541,172 - OHPLBJKB_02427 0.38 +0.2
2,541,188 + OHPLBJKB_02427 0.41 -0.8
2,541,188 + OHPLBJKB_02427 0.41 -1.4
2,541,188 + OHPLBJKB_02427 0.41 -0.5
2,541,188 + OHPLBJKB_02427 0.41 -0.6
2,541,188 + OHPLBJKB_02427 0.41 -0.5
2,541,189 - OHPLBJKB_02427 0.41 -0.0
2,541,189 - OHPLBJKB_02427 0.41 -0.0
2,541,189 - OHPLBJKB_02427 0.41 -0.2
2,541,196 - OHPLBJKB_02427 0.42 -1.0
2,541,210 - OHPLBJKB_02427 0.44 -0.4
2,541,243 - OHPLBJKB_02427 0.49 +0.4

Or see this region's nucleotide sequence