Strain Fitness in Escherichia coli HS(pFamp)R (ATCC 700891) around OHPLBJKB_02339

Experiment: Control_HSF

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOHPLBJKB_02338 and OHPLBJKB_02339 are separated by 29 nucleotidesOHPLBJKB_02339 and OHPLBJKB_02340 are separated by 274 nucleotides OHPLBJKB_02338: OHPLBJKB_02338 - ATP-dependent RNA helicase DbpA, at 2,445,508 to 2,446,881 _02338 OHPLBJKB_02339: OHPLBJKB_02339 - hypothetical protein, at 2,446,911 to 2,447,084 _02339 OHPLBJKB_02340: OHPLBJKB_02340 - Zinc transport protein ZntB, at 2,447,359 to 2,448,342 _02340 Position (kb) 2446 2447 2448Strain fitness (log2 ratio) -2 -1 0 1 2at 2445.960 kb on + strand, within OHPLBJKB_02338at 2445.960 kb on + strand, within OHPLBJKB_02338at 2445.961 kb on - strand, within OHPLBJKB_02338at 2446.070 kb on - strand, within OHPLBJKB_02338at 2446.091 kb on - strand, within OHPLBJKB_02338at 2446.135 kb on - strand, within OHPLBJKB_02338at 2446.174 kb on + strand, within OHPLBJKB_02338at 2446.174 kb on + strand, within OHPLBJKB_02338at 2446.174 kb on + strand, within OHPLBJKB_02338at 2446.175 kb on - strand, within OHPLBJKB_02338at 2446.175 kb on - strand, within OHPLBJKB_02338at 2446.175 kb on - strand, within OHPLBJKB_02338at 2446.221 kb on - strand, within OHPLBJKB_02338at 2446.437 kb on + strand, within OHPLBJKB_02338at 2446.437 kb on + strand, within OHPLBJKB_02338at 2446.507 kb on - strand, within OHPLBJKB_02338at 2446.582 kb on - strand, within OHPLBJKB_02338at 2446.657 kb on + strand, within OHPLBJKB_02338at 2446.658 kb on - strand, within OHPLBJKB_02338at 2446.815 kb on - strandat 2446.867 kb on - strandat 2446.886 kb on + strandat 2446.886 kb on + strandat 2446.937 kb on + strand, within OHPLBJKB_02339at 2446.937 kb on + strand, within OHPLBJKB_02339at 2446.938 kb on - strand, within OHPLBJKB_02339at 2447.068 kb on + strandat 2447.068 kb on + strandat 2447.072 kb on + strandat 2447.073 kb on - strandat 2447.134 kb on + strandat 2447.134 kb on + strandat 2447.135 kb on - strandat 2447.190 kb on + strandat 2447.191 kb on - strandat 2447.198 kb on - strandat 2447.214 kb on + strandat 2447.215 kb on - strandat 2447.222 kb on + strandat 2447.272 kb on + strandat 2447.273 kb on - strandat 2447.273 kb on - strandat 2447.273 kb on - strandat 2447.331 kb on - strandat 2447.414 kb on - strandat 2447.486 kb on - strand, within OHPLBJKB_02340at 2447.538 kb on + strand, within OHPLBJKB_02340at 2447.538 kb on + strand, within OHPLBJKB_02340at 2447.539 kb on - strand, within OHPLBJKB_02340at 2447.539 kb on - strand, within OHPLBJKB_02340at 2447.539 kb on - strand, within OHPLBJKB_02340at 2447.540 kb on + strand, within OHPLBJKB_02340at 2447.540 kb on + strand, within OHPLBJKB_02340at 2447.540 kb on + strand, within OHPLBJKB_02340at 2447.541 kb on - strand, within OHPLBJKB_02340at 2447.610 kb on + strand, within OHPLBJKB_02340at 2447.610 kb on + strand, within OHPLBJKB_02340at 2447.610 kb on + strand, within OHPLBJKB_02340at 2447.611 kb on - strand, within OHPLBJKB_02340at 2447.742 kb on + strand, within OHPLBJKB_02340at 2447.743 kb on - strand, within OHPLBJKB_02340at 2447.743 kb on - strand, within OHPLBJKB_02340at 2447.744 kb on + strand, within OHPLBJKB_02340at 2447.820 kb on + strand, within OHPLBJKB_02340at 2447.860 kb on - strand, within OHPLBJKB_02340at 2448.012 kb on + strand, within OHPLBJKB_02340at 2448.012 kb on + strand, within OHPLBJKB_02340at 2448.013 kb on - strand, within OHPLBJKB_02340at 2448.013 kb on - strand, within OHPLBJKB_02340at 2448.013 kb on - strand, within OHPLBJKB_02340at 2448.013 kb on - strand, within OHPLBJKB_02340at 2448.014 kb on + strand, within OHPLBJKB_02340at 2448.014 kb on + strand, within OHPLBJKB_02340at 2448.014 kb on + strand, within OHPLBJKB_02340at 2448.014 kb on + strand, within OHPLBJKB_02340at 2448.014 kb on + strand, within OHPLBJKB_02340at 2448.014 kb on + strand, within OHPLBJKB_02340at 2448.014 kb on + strand, within OHPLBJKB_02340at 2448.014 kb on + strand, within OHPLBJKB_02340at 2448.015 kb on - strand, within OHPLBJKB_02340at 2448.015 kb on - strand, within OHPLBJKB_02340at 2448.015 kb on - strand, within OHPLBJKB_02340at 2448.015 kb on - strand, within OHPLBJKB_02340at 2448.015 kb on - strand, within OHPLBJKB_02340at 2448.015 kb on - strand, within OHPLBJKB_02340at 2448.015 kb on - strand, within OHPLBJKB_02340at 2448.015 kb on - strand, within OHPLBJKB_02340at 2448.016 kb on + strand, within OHPLBJKB_02340at 2448.016 kb on + strand, within OHPLBJKB_02340at 2448.016 kb on + strand, within OHPLBJKB_02340at 2448.016 kb on + strand, within OHPLBJKB_02340at 2448.016 kb on + strand, within OHPLBJKB_02340at 2448.017 kb on - strand, within OHPLBJKB_02340at 2448.017 kb on - strand, within OHPLBJKB_02340at 2448.017 kb on - strand, within OHPLBJKB_02340at 2448.017 kb on - strand, within OHPLBJKB_02340at 2448.017 kb on - strand, within OHPLBJKB_02340at 2448.017 kb on - strand, within OHPLBJKB_02340at 2448.066 kb on + strand, within OHPLBJKB_02340at 2448.066 kb on + strand, within OHPLBJKB_02340at 2448.078 kb on + strand, within OHPLBJKB_02340at 2448.078 kb on + strand, within OHPLBJKB_02340at 2448.078 kb on + strand, within OHPLBJKB_02340

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Per-strain Table

Position Strand Gene LocusTag Fraction Control_HSF
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2,445,960 + OHPLBJKB_02338 0.33 -0.7
2,445,960 + OHPLBJKB_02338 0.33 -0.3
2,445,961 - OHPLBJKB_02338 0.33 -0.3
2,446,070 - OHPLBJKB_02338 0.41 +0.4
2,446,091 - OHPLBJKB_02338 0.42 -0.0
2,446,135 - OHPLBJKB_02338 0.46 -1.9
2,446,174 + OHPLBJKB_02338 0.48 -0.1
2,446,174 + OHPLBJKB_02338 0.48 +0.5
2,446,174 + OHPLBJKB_02338 0.48 -1.9
2,446,175 - OHPLBJKB_02338 0.49 +0.7
2,446,175 - OHPLBJKB_02338 0.49 +2.1
2,446,175 - OHPLBJKB_02338 0.49 -1.9
2,446,221 - OHPLBJKB_02338 0.52 +0.2
2,446,437 + OHPLBJKB_02338 0.68 +0.2
2,446,437 + OHPLBJKB_02338 0.68 +1.1
2,446,507 - OHPLBJKB_02338 0.73 -0.4
2,446,582 - OHPLBJKB_02338 0.78 -1.8
2,446,657 + OHPLBJKB_02338 0.84 +0.2
2,446,658 - OHPLBJKB_02338 0.84 +0.3
2,446,815 - +0.0
2,446,867 - +0.1
2,446,886 + +0.2
2,446,886 + -0.5
2,446,937 + OHPLBJKB_02339 0.15 -0.1
2,446,937 + OHPLBJKB_02339 0.15 -0.5
2,446,938 - OHPLBJKB_02339 0.16 -1.1
2,447,068 + +1.2
2,447,068 + +0.6
2,447,072 + +0.5
2,447,073 - +0.2
2,447,134 + +0.2
2,447,134 + -0.6
2,447,135 - -1.3
2,447,190 + +0.9
2,447,191 - -0.0
2,447,198 - -1.0
2,447,214 + -0.6
2,447,215 - +0.2
2,447,222 + -1.8
2,447,272 + -0.1
2,447,273 - -1.2
2,447,273 - +0.3
2,447,273 - +1.0
2,447,331 - -1.1
2,447,414 - +0.1
2,447,486 - OHPLBJKB_02340 0.13 -0.6
2,447,538 + OHPLBJKB_02340 0.18 +0.1
2,447,538 + OHPLBJKB_02340 0.18 -1.2
2,447,539 - OHPLBJKB_02340 0.18 -0.9
2,447,539 - OHPLBJKB_02340 0.18 +0.8
2,447,539 - OHPLBJKB_02340 0.18 -0.5
2,447,540 + OHPLBJKB_02340 0.18 -1.9
2,447,540 + OHPLBJKB_02340 0.18 +0.4
2,447,540 + OHPLBJKB_02340 0.18 -0.4
2,447,541 - OHPLBJKB_02340 0.18 -0.1
2,447,610 + OHPLBJKB_02340 0.26 -0.1
2,447,610 + OHPLBJKB_02340 0.26 -1.4
2,447,610 + OHPLBJKB_02340 0.26 -0.9
2,447,611 - OHPLBJKB_02340 0.26 -1.3
2,447,742 + OHPLBJKB_02340 0.39 +0.4
2,447,743 - OHPLBJKB_02340 0.39 +1.2
2,447,743 - OHPLBJKB_02340 0.39 +0.9
2,447,744 + OHPLBJKB_02340 0.39 -0.9
2,447,820 + OHPLBJKB_02340 0.47 +0.1
2,447,860 - OHPLBJKB_02340 0.51 -1.4
2,448,012 + OHPLBJKB_02340 0.66 -0.1
2,448,012 + OHPLBJKB_02340 0.66 -1.3
2,448,013 - OHPLBJKB_02340 0.66 -0.8
2,448,013 - OHPLBJKB_02340 0.66 +0.4
2,448,013 - OHPLBJKB_02340 0.66 +0.6
2,448,013 - OHPLBJKB_02340 0.66 -0.7
2,448,014 + OHPLBJKB_02340 0.67 -1.9
2,448,014 + OHPLBJKB_02340 0.67 +0.1
2,448,014 + OHPLBJKB_02340 0.67 +1.2
2,448,014 + OHPLBJKB_02340 0.67 +0.7
2,448,014 + OHPLBJKB_02340 0.67 +0.2
2,448,014 + OHPLBJKB_02340 0.67 -0.8
2,448,014 + OHPLBJKB_02340 0.67 -0.4
2,448,014 + OHPLBJKB_02340 0.67 +1.5
2,448,015 - OHPLBJKB_02340 0.67 -0.1
2,448,015 - OHPLBJKB_02340 0.67 -0.2
2,448,015 - OHPLBJKB_02340 0.67 +1.2
2,448,015 - OHPLBJKB_02340 0.67 +0.0
2,448,015 - OHPLBJKB_02340 0.67 -0.9
2,448,015 - OHPLBJKB_02340 0.67 +0.3
2,448,015 - OHPLBJKB_02340 0.67 -1.1
2,448,015 - OHPLBJKB_02340 0.67 +0.2
2,448,016 + OHPLBJKB_02340 0.67 +0.2
2,448,016 + OHPLBJKB_02340 0.67 -0.2
2,448,016 + OHPLBJKB_02340 0.67 +0.1
2,448,016 + OHPLBJKB_02340 0.67 -0.3
2,448,016 + OHPLBJKB_02340 0.67 +0.4
2,448,017 - OHPLBJKB_02340 0.67 -0.6
2,448,017 - OHPLBJKB_02340 0.67 +0.2
2,448,017 - OHPLBJKB_02340 0.67 -0.5
2,448,017 - OHPLBJKB_02340 0.67 +0.5
2,448,017 - OHPLBJKB_02340 0.67 +0.0
2,448,017 - OHPLBJKB_02340 0.67 -0.2
2,448,066 + OHPLBJKB_02340 0.72 -0.5
2,448,066 + OHPLBJKB_02340 0.72 -1.6
2,448,078 + OHPLBJKB_02340 0.73 +0.1
2,448,078 + OHPLBJKB_02340 0.73 -0.4
2,448,078 + OHPLBJKB_02340 0.73 -0.0

Or see this region's nucleotide sequence