Strain Fitness in Escherichia coli HS(pFamp)R (ATCC 700891) around OHPLBJKB_02307

Experiment: Control_HSF

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOHPLBJKB_02305 and OHPLBJKB_02306 overlap by 1 nucleotidesOHPLBJKB_02306 and OHPLBJKB_02307 are separated by 170 nucleotidesOHPLBJKB_02307 and OHPLBJKB_02308 are separated by 63 nucleotides OHPLBJKB_02305: OHPLBJKB_02305 - hypothetical protein, at 2,403,094 to 2,403,990 _02305 OHPLBJKB_02306: OHPLBJKB_02306 - Inner membrane protein YnbA, at 2,403,990 to 2,404,595 _02306 OHPLBJKB_02307: OHPLBJKB_02307 - hypothetical protein, at 2,404,766 to 2,407,072 _02307 OHPLBJKB_02308: OHPLBJKB_02308 - Pyridoxine 4-dehydrogenase, at 2,407,136 to 2,407,996 _02308 Position (kb) 2404 2405 2406 2407 2408Strain fitness (log2 ratio) -2 -1 0 1at 2403.886 kb on - strand, within OHPLBJKB_02305at 2403.886 kb on - strand, within OHPLBJKB_02305at 2404.236 kb on + strand, within OHPLBJKB_02306at 2404.288 kb on - strand, within OHPLBJKB_02306at 2404.310 kb on + strand, within OHPLBJKB_02306at 2404.400 kb on + strand, within OHPLBJKB_02306at 2404.517 kb on + strand, within OHPLBJKB_02306at 2404.555 kb on - strandat 2404.609 kb on + strandat 2404.689 kb on - strandat 2404.689 kb on - strandat 2404.689 kb on - strandat 2404.908 kb on - strandat 2404.908 kb on - strandat 2404.910 kb on + strandat 2404.910 kb on + strandat 2404.911 kb on - strandat 2404.911 kb on - strandat 2404.911 kb on - strandat 2405.005 kb on + strand, within OHPLBJKB_02307at 2405.051 kb on - strand, within OHPLBJKB_02307at 2405.060 kb on + strand, within OHPLBJKB_02307at 2405.062 kb on + strand, within OHPLBJKB_02307at 2405.062 kb on + strand, within OHPLBJKB_02307at 2405.063 kb on - strand, within OHPLBJKB_02307at 2405.063 kb on - strand, within OHPLBJKB_02307at 2405.121 kb on + strand, within OHPLBJKB_02307at 2405.121 kb on + strand, within OHPLBJKB_02307at 2405.124 kb on + strand, within OHPLBJKB_02307at 2405.257 kb on + strand, within OHPLBJKB_02307at 2405.261 kb on + strand, within OHPLBJKB_02307at 2405.298 kb on - strand, within OHPLBJKB_02307at 2405.318 kb on + strand, within OHPLBJKB_02307at 2405.319 kb on - strand, within OHPLBJKB_02307at 2405.319 kb on - strand, within OHPLBJKB_02307at 2405.350 kb on + strand, within OHPLBJKB_02307at 2405.553 kb on - strand, within OHPLBJKB_02307at 2405.621 kb on + strand, within OHPLBJKB_02307at 2405.621 kb on + strand, within OHPLBJKB_02307at 2405.621 kb on + strand, within OHPLBJKB_02307at 2405.654 kb on + strand, within OHPLBJKB_02307at 2405.654 kb on + strand, within OHPLBJKB_02307at 2405.655 kb on - strand, within OHPLBJKB_02307at 2405.687 kb on + strand, within OHPLBJKB_02307at 2405.826 kb on + strand, within OHPLBJKB_02307at 2405.924 kb on - strand, within OHPLBJKB_02307at 2406.151 kb on + strand, within OHPLBJKB_02307at 2406.151 kb on + strand, within OHPLBJKB_02307at 2406.151 kb on + strand, within OHPLBJKB_02307at 2406.152 kb on - strand, within OHPLBJKB_02307at 2406.152 kb on - strand, within OHPLBJKB_02307at 2406.152 kb on - strand, within OHPLBJKB_02307at 2406.152 kb on - strand, within OHPLBJKB_02307at 2406.152 kb on - strand, within OHPLBJKB_02307at 2406.196 kb on + strand, within OHPLBJKB_02307at 2406.196 kb on + strand, within OHPLBJKB_02307at 2406.275 kb on - strand, within OHPLBJKB_02307at 2406.449 kb on + strand, within OHPLBJKB_02307at 2406.579 kb on - strand, within OHPLBJKB_02307at 2406.826 kb on + strand, within OHPLBJKB_02307at 2406.914 kb on - strandat 2406.970 kb on + strandat 2406.979 kb on + strandat 2406.979 kb on + strandat 2407.025 kb on - strandat 2407.037 kb on + strandat 2407.038 kb on - strandat 2407.038 kb on - strandat 2407.073 kb on - strandat 2407.129 kb on - strandat 2407.129 kb on - strandat 2407.268 kb on + strand, within OHPLBJKB_02308at 2407.269 kb on - strand, within OHPLBJKB_02308at 2407.352 kb on - strand, within OHPLBJKB_02308at 2407.380 kb on + strand, within OHPLBJKB_02308at 2407.380 kb on + strand, within OHPLBJKB_02308at 2407.381 kb on - strand, within OHPLBJKB_02308at 2407.381 kb on - strand, within OHPLBJKB_02308at 2407.381 kb on - strand, within OHPLBJKB_02308at 2407.522 kb on + strand, within OHPLBJKB_02308at 2407.523 kb on - strand, within OHPLBJKB_02308at 2407.523 kb on - strand, within OHPLBJKB_02308at 2407.615 kb on + strand, within OHPLBJKB_02308at 2407.657 kb on + strand, within OHPLBJKB_02308at 2407.658 kb on - strand, within OHPLBJKB_02308at 2407.661 kb on + strand, within OHPLBJKB_02308at 2407.661 kb on + strand, within OHPLBJKB_02308at 2407.662 kb on - strand, within OHPLBJKB_02308at 2407.662 kb on - strand, within OHPLBJKB_02308at 2407.841 kb on - strand, within OHPLBJKB_02308at 2407.880 kb on + strand, within OHPLBJKB_02308at 2407.881 kb on - strand, within OHPLBJKB_02308at 2407.979 kb on - strandat 2407.984 kb on + strandat 2407.984 kb on + strandat 2407.985 kb on - strandat 2407.985 kb on - strandat 2407.985 kb on - strandat 2407.985 kb on - strandat 2408.039 kb on + strandat 2408.039 kb on + strandat 2408.040 kb on - strandat 2408.059 kb on + strandat 2408.060 kb on - strandat 2408.072 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Control_HSF
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2,403,886 - OHPLBJKB_02305 0.88 -2.2
2,403,886 - OHPLBJKB_02305 0.88 +1.2
2,404,236 + OHPLBJKB_02306 0.41 +0.2
2,404,288 - OHPLBJKB_02306 0.49 +0.1
2,404,310 + OHPLBJKB_02306 0.53 +0.1
2,404,400 + OHPLBJKB_02306 0.68 +0.6
2,404,517 + OHPLBJKB_02306 0.87 -0.6
2,404,555 - +0.1
2,404,609 + -0.4
2,404,689 - -0.8
2,404,689 - +0.0
2,404,689 - -0.9
2,404,908 - -0.0
2,404,908 - -0.2
2,404,910 + -0.4
2,404,910 + +0.1
2,404,911 - -0.5
2,404,911 - -1.1
2,404,911 - -0.2
2,405,005 + OHPLBJKB_02307 0.10 -1.5
2,405,051 - OHPLBJKB_02307 0.12 +0.2
2,405,060 + OHPLBJKB_02307 0.13 -0.4
2,405,062 + OHPLBJKB_02307 0.13 -0.1
2,405,062 + OHPLBJKB_02307 0.13 +0.2
2,405,063 - OHPLBJKB_02307 0.13 -0.8
2,405,063 - OHPLBJKB_02307 0.13 -1.3
2,405,121 + OHPLBJKB_02307 0.15 -1.6
2,405,121 + OHPLBJKB_02307 0.15 -0.9
2,405,124 + OHPLBJKB_02307 0.16 +0.5
2,405,257 + OHPLBJKB_02307 0.21 +0.8
2,405,261 + OHPLBJKB_02307 0.21 -0.5
2,405,298 - OHPLBJKB_02307 0.23 -0.4
2,405,318 + OHPLBJKB_02307 0.24 +0.5
2,405,319 - OHPLBJKB_02307 0.24 +0.0
2,405,319 - OHPLBJKB_02307 0.24 -0.6
2,405,350 + OHPLBJKB_02307 0.25 -0.4
2,405,553 - OHPLBJKB_02307 0.34 +0.9
2,405,621 + OHPLBJKB_02307 0.37 -0.5
2,405,621 + OHPLBJKB_02307 0.37 -0.2
2,405,621 + OHPLBJKB_02307 0.37 -1.4
2,405,654 + OHPLBJKB_02307 0.38 +0.2
2,405,654 + OHPLBJKB_02307 0.38 +0.1
2,405,655 - OHPLBJKB_02307 0.39 +1.4
2,405,687 + OHPLBJKB_02307 0.40 +1.2
2,405,826 + OHPLBJKB_02307 0.46 -1.4
2,405,924 - OHPLBJKB_02307 0.50 -1.0
2,406,151 + OHPLBJKB_02307 0.60 +0.4
2,406,151 + OHPLBJKB_02307 0.60 +0.8
2,406,151 + OHPLBJKB_02307 0.60 +0.1
2,406,152 - OHPLBJKB_02307 0.60 +0.1
2,406,152 - OHPLBJKB_02307 0.60 -0.1
2,406,152 - OHPLBJKB_02307 0.60 -0.5
2,406,152 - OHPLBJKB_02307 0.60 +0.2
2,406,152 - OHPLBJKB_02307 0.60 -2.6
2,406,196 + OHPLBJKB_02307 0.62 -1.2
2,406,196 + OHPLBJKB_02307 0.62 +0.4
2,406,275 - OHPLBJKB_02307 0.65 -0.8
2,406,449 + OHPLBJKB_02307 0.73 +1.2
2,406,579 - OHPLBJKB_02307 0.79 +0.8
2,406,826 + OHPLBJKB_02307 0.89 -1.2
2,406,914 - +1.6
2,406,970 + -0.1
2,406,979 + +0.6
2,406,979 + +0.7
2,407,025 - -1.4
2,407,037 + +0.3
2,407,038 - +0.5
2,407,038 - -1.4
2,407,073 - +0.0
2,407,129 - +0.4
2,407,129 - +0.2
2,407,268 + OHPLBJKB_02308 0.15 +1.2
2,407,269 - OHPLBJKB_02308 0.15 +0.7
2,407,352 - OHPLBJKB_02308 0.25 +0.4
2,407,380 + OHPLBJKB_02308 0.28 +1.2
2,407,380 + OHPLBJKB_02308 0.28 -0.5
2,407,381 - OHPLBJKB_02308 0.28 +0.1
2,407,381 - OHPLBJKB_02308 0.28 +0.5
2,407,381 - OHPLBJKB_02308 0.28 -0.1
2,407,522 + OHPLBJKB_02308 0.45 -0.4
2,407,523 - OHPLBJKB_02308 0.45 -0.7
2,407,523 - OHPLBJKB_02308 0.45 -0.0
2,407,615 + OHPLBJKB_02308 0.56 -1.5
2,407,657 + OHPLBJKB_02308 0.61 -1.4
2,407,658 - OHPLBJKB_02308 0.61 +0.8
2,407,661 + OHPLBJKB_02308 0.61 +0.8
2,407,661 + OHPLBJKB_02308 0.61 +1.0
2,407,662 - OHPLBJKB_02308 0.61 -0.7
2,407,662 - OHPLBJKB_02308 0.61 +0.1
2,407,841 - OHPLBJKB_02308 0.82 +0.1
2,407,880 + OHPLBJKB_02308 0.86 -0.1
2,407,881 - OHPLBJKB_02308 0.87 +0.2
2,407,979 - +0.1
2,407,984 + -0.8
2,407,984 + -0.7
2,407,985 - +0.2
2,407,985 - +0.1
2,407,985 - -0.7
2,407,985 - +1.3
2,408,039 + -0.4
2,408,039 + +0.1
2,408,040 - +0.1
2,408,059 + -1.0
2,408,060 - -0.5
2,408,072 + +0.0

Or see this region's nucleotide sequence