Strain Fitness in Escherichia coli HS(pFamp)R (ATCC 700891) around OHPLBJKB_02290

Experiment: Control_HSF

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOHPLBJKB_02288 and OHPLBJKB_02289 overlap by 6 nucleotidesOHPLBJKB_02289 and OHPLBJKB_02290 are separated by 62 nucleotidesOHPLBJKB_02290 and OHPLBJKB_02291 are separated by 139 nucleotides OHPLBJKB_02288: OHPLBJKB_02288 - hypothetical protein, at 2,381,766 to 2,382,746 _02288 OHPLBJKB_02289: OHPLBJKB_02289 - Ribosomal-protein-serine acetyltransferase, at 2,382,741 to 2,383,277 _02289 OHPLBJKB_02290: OHPLBJKB_02290 - hypothetical protein, at 2,383,340 to 2,383,564 _02290 OHPLBJKB_02291: OHPLBJKB_02291 - Glucans biosynthesis protein D, at 2,383,704 to 2,385,323 _02291 Position (kb) 2383 2384Strain fitness (log2 ratio) -2 -1 0 1 2at 2382.353 kb on + strand, within OHPLBJKB_02288at 2382.354 kb on - strand, within OHPLBJKB_02288at 2382.396 kb on + strand, within OHPLBJKB_02288at 2382.396 kb on + strand, within OHPLBJKB_02288at 2382.424 kb on + strand, within OHPLBJKB_02288at 2382.474 kb on + strand, within OHPLBJKB_02288at 2382.491 kb on + strand, within OHPLBJKB_02288at 2382.491 kb on + strand, within OHPLBJKB_02288at 2382.491 kb on + strand, within OHPLBJKB_02288at 2382.538 kb on + strand, within OHPLBJKB_02288at 2382.575 kb on - strand, within OHPLBJKB_02288at 2382.578 kb on - strand, within OHPLBJKB_02288at 2382.578 kb on - strand, within OHPLBJKB_02288at 2382.578 kb on - strand, within OHPLBJKB_02288at 2382.578 kb on - strand, within OHPLBJKB_02288at 2382.594 kb on - strand, within OHPLBJKB_02288at 2382.631 kb on + strand, within OHPLBJKB_02288at 2382.742 kb on + strandat 2382.742 kb on + strandat 2382.756 kb on - strandat 2382.756 kb on - strandat 2382.763 kb on + strandat 2382.764 kb on - strandat 2382.766 kb on - strandat 2382.766 kb on - strandat 2382.782 kb on - strandat 2382.827 kb on + strand, within OHPLBJKB_02289at 2382.827 kb on + strand, within OHPLBJKB_02289at 2382.828 kb on - strand, within OHPLBJKB_02289at 2382.896 kb on + strand, within OHPLBJKB_02289at 2382.896 kb on + strand, within OHPLBJKB_02289at 2382.896 kb on + strand, within OHPLBJKB_02289at 2382.897 kb on - strand, within OHPLBJKB_02289at 2382.916 kb on + strand, within OHPLBJKB_02289at 2382.916 kb on + strand, within OHPLBJKB_02289at 2383.005 kb on - strand, within OHPLBJKB_02289at 2383.020 kb on - strand, within OHPLBJKB_02289at 2383.082 kb on - strand, within OHPLBJKB_02289at 2383.107 kb on - strand, within OHPLBJKB_02289at 2383.197 kb on + strand, within OHPLBJKB_02289at 2383.239 kb on + strandat 2383.240 kb on - strandat 2383.240 kb on - strandat 2383.281 kb on - strandat 2383.341 kb on + strandat 2383.398 kb on - strand, within OHPLBJKB_02290at 2383.398 kb on - strand, within OHPLBJKB_02290at 2383.483 kb on + strand, within OHPLBJKB_02290at 2383.507 kb on + strand, within OHPLBJKB_02290at 2383.508 kb on - strand, within OHPLBJKB_02290at 2383.542 kb on - strandat 2383.542 kb on - strandat 2383.542 kb on - strandat 2383.564 kb on + strandat 2383.564 kb on + strandat 2383.564 kb on + strandat 2383.564 kb on + strandat 2383.565 kb on - strandat 2383.565 kb on - strandat 2383.595 kb on + strandat 2383.595 kb on + strandat 2383.595 kb on + strandat 2383.604 kb on + strandat 2383.605 kb on - strandat 2383.605 kb on - strandat 2383.628 kb on - strandat 2383.705 kb on + strandat 2383.705 kb on + strandat 2383.729 kb on + strandat 2383.729 kb on + strandat 2383.730 kb on - strandat 2383.759 kb on + strandat 2383.760 kb on - strandat 2383.760 kb on - strandat 2383.807 kb on + strandat 2383.807 kb on + strandat 2383.808 kb on - strandat 2383.808 kb on - strandat 2383.808 kb on - strandat 2383.808 kb on - strandat 2383.808 kb on - strandat 2383.892 kb on - strand, within OHPLBJKB_02291at 2383.892 kb on - strand, within OHPLBJKB_02291at 2383.932 kb on - strand, within OHPLBJKB_02291at 2384.123 kb on - strand, within OHPLBJKB_02291at 2384.246 kb on + strand, within OHPLBJKB_02291at 2384.291 kb on + strand, within OHPLBJKB_02291at 2384.293 kb on + strand, within OHPLBJKB_02291at 2384.293 kb on + strand, within OHPLBJKB_02291at 2384.304 kb on - strand, within OHPLBJKB_02291at 2384.374 kb on + strand, within OHPLBJKB_02291at 2384.374 kb on + strand, within OHPLBJKB_02291at 2384.375 kb on - strand, within OHPLBJKB_02291at 2384.504 kb on + strand, within OHPLBJKB_02291at 2384.505 kb on - strand, within OHPLBJKB_02291at 2384.522 kb on + strand, within OHPLBJKB_02291at 2384.552 kb on + strand, within OHPLBJKB_02291

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Per-strain Table

Position Strand Gene LocusTag Fraction Control_HSF
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2,382,353 + OHPLBJKB_02288 0.60 +0.7
2,382,354 - OHPLBJKB_02288 0.60 -1.2
2,382,396 + OHPLBJKB_02288 0.64 +0.8
2,382,396 + OHPLBJKB_02288 0.64 -0.2
2,382,424 + OHPLBJKB_02288 0.67 -0.2
2,382,474 + OHPLBJKB_02288 0.72 -0.9
2,382,491 + OHPLBJKB_02288 0.74 -1.1
2,382,491 + OHPLBJKB_02288 0.74 +0.3
2,382,491 + OHPLBJKB_02288 0.74 -0.1
2,382,538 + OHPLBJKB_02288 0.79 -0.9
2,382,575 - OHPLBJKB_02288 0.82 -2.0
2,382,578 - OHPLBJKB_02288 0.83 -1.0
2,382,578 - OHPLBJKB_02288 0.83 -0.4
2,382,578 - OHPLBJKB_02288 0.83 -0.4
2,382,578 - OHPLBJKB_02288 0.83 +1.1
2,382,594 - OHPLBJKB_02288 0.84 -1.0
2,382,631 + OHPLBJKB_02288 0.88 +0.4
2,382,742 + -1.2
2,382,742 + -0.7
2,382,756 - +0.5
2,382,756 - +0.7
2,382,763 + -0.4
2,382,764 - +0.2
2,382,766 - +0.7
2,382,766 - +0.8
2,382,782 - +0.6
2,382,827 + OHPLBJKB_02289 0.16 -1.1
2,382,827 + OHPLBJKB_02289 0.16 -0.7
2,382,828 - OHPLBJKB_02289 0.16 -0.5
2,382,896 + OHPLBJKB_02289 0.29 +0.0
2,382,896 + OHPLBJKB_02289 0.29 +0.3
2,382,896 + OHPLBJKB_02289 0.29 +0.1
2,382,897 - OHPLBJKB_02289 0.29 +1.2
2,382,916 + OHPLBJKB_02289 0.33 -0.5
2,382,916 + OHPLBJKB_02289 0.33 +0.5
2,383,005 - OHPLBJKB_02289 0.49 +0.2
2,383,020 - OHPLBJKB_02289 0.52 -0.0
2,383,082 - OHPLBJKB_02289 0.64 -0.2
2,383,107 - OHPLBJKB_02289 0.68 -0.4
2,383,197 + OHPLBJKB_02289 0.85 +0.1
2,383,239 + -1.8
2,383,240 - -0.4
2,383,240 - -0.1
2,383,281 - -0.7
2,383,341 + +0.2
2,383,398 - OHPLBJKB_02290 0.26 -1.1
2,383,398 - OHPLBJKB_02290 0.26 -0.0
2,383,483 + OHPLBJKB_02290 0.64 -1.1
2,383,507 + OHPLBJKB_02290 0.74 -0.6
2,383,508 - OHPLBJKB_02290 0.75 +0.6
2,383,542 - +0.6
2,383,542 - -0.2
2,383,542 - +0.1
2,383,564 + -0.9
2,383,564 + -0.5
2,383,564 + -0.8
2,383,564 + -0.8
2,383,565 - +0.5
2,383,565 - +1.8
2,383,595 + -1.2
2,383,595 + +0.2
2,383,595 + +0.1
2,383,604 + -0.2
2,383,605 - +0.8
2,383,605 - +0.9
2,383,628 - +0.0
2,383,705 + +0.1
2,383,705 + -1.1
2,383,729 + +1.2
2,383,729 + -0.5
2,383,730 - +1.5
2,383,759 + -1.2
2,383,760 - +0.8
2,383,760 - +0.3
2,383,807 + -0.0
2,383,807 + +0.2
2,383,808 - -0.4
2,383,808 - -0.2
2,383,808 - +0.1
2,383,808 - -0.1
2,383,808 - -0.0
2,383,892 - OHPLBJKB_02291 0.12 -2.0
2,383,892 - OHPLBJKB_02291 0.12 +0.6
2,383,932 - OHPLBJKB_02291 0.14 -0.7
2,384,123 - OHPLBJKB_02291 0.26 -0.4
2,384,246 + OHPLBJKB_02291 0.33 +0.2
2,384,291 + OHPLBJKB_02291 0.36 +0.5
2,384,293 + OHPLBJKB_02291 0.36 -0.0
2,384,293 + OHPLBJKB_02291 0.36 -0.1
2,384,304 - OHPLBJKB_02291 0.37 -0.1
2,384,374 + OHPLBJKB_02291 0.41 -0.5
2,384,374 + OHPLBJKB_02291 0.41 -0.4
2,384,375 - OHPLBJKB_02291 0.41 +0.7
2,384,504 + OHPLBJKB_02291 0.49 +0.1
2,384,505 - OHPLBJKB_02291 0.49 -0.4
2,384,522 + OHPLBJKB_02291 0.50 +0.9
2,384,552 + OHPLBJKB_02291 0.52 +0.4

Or see this region's nucleotide sequence