Strain Fitness in Escherichia coli HS(pFamp)R (ATCC 700891) around OHPLBJKB_02224

Experiment: Control_HSF

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOHPLBJKB_02223 and OHPLBJKB_02224 are separated by 362 nucleotidesOHPLBJKB_02224 and OHPLBJKB_02225 are separated by 155 nucleotides OHPLBJKB_02223: OHPLBJKB_02223 - hypothetical protein, at 2,310,631 to 2,313,411 _02223 OHPLBJKB_02224: OHPLBJKB_02224 - Glutamate decarboxylase beta, at 2,313,774 to 2,315,174 _02224 OHPLBJKB_02225: OHPLBJKB_02225 - putative glutamate/gamma-aminobutyrate antiporter, at 2,315,330 to 2,316,865 _02225 Position (kb) 2313 2314 2315 2316Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2312.782 kb on + strand, within OHPLBJKB_02223at 2312.786 kb on + strand, within OHPLBJKB_02223at 2312.787 kb on - strand, within OHPLBJKB_02223at 2312.787 kb on - strand, within OHPLBJKB_02223at 2312.867 kb on + strand, within OHPLBJKB_02223at 2312.867 kb on + strand, within OHPLBJKB_02223at 2312.868 kb on - strand, within OHPLBJKB_02223at 2312.868 kb on - strand, within OHPLBJKB_02223at 2312.967 kb on + strand, within OHPLBJKB_02223at 2312.997 kb on + strand, within OHPLBJKB_02223at 2312.998 kb on - strand, within OHPLBJKB_02223at 2313.026 kb on - strand, within OHPLBJKB_02223at 2313.026 kb on - strand, within OHPLBJKB_02223at 2313.091 kb on - strand, within OHPLBJKB_02223at 2313.245 kb on + strandat 2313.265 kb on - strandat 2313.278 kb on - strandat 2313.381 kb on + strandat 2313.381 kb on + strandat 2313.716 kb on + strandat 2313.923 kb on - strand, within OHPLBJKB_02224at 2314.951 kb on - strand, within OHPLBJKB_02224at 2315.261 kb on - strandat 2315.326 kb on + strandat 2315.327 kb on - strandat 2315.329 kb on + strandat 2315.329 kb on + strandat 2315.330 kb on - strandat 2315.335 kb on + strandat 2315.335 kb on + strandat 2315.354 kb on - strandat 2315.359 kb on + strandat 2315.373 kb on + strandat 2315.373 kb on + strandat 2315.374 kb on - strandat 2315.374 kb on - strandat 2315.407 kb on - strandat 2315.418 kb on - strandat 2315.418 kb on - strandat 2315.469 kb on + strandat 2315.485 kb on - strand, within OHPLBJKB_02225at 2315.491 kb on + strand, within OHPLBJKB_02225at 2315.492 kb on - strand, within OHPLBJKB_02225at 2315.572 kb on + strand, within OHPLBJKB_02225at 2315.572 kb on + strand, within OHPLBJKB_02225at 2315.573 kb on - strand, within OHPLBJKB_02225at 2315.652 kb on - strand, within OHPLBJKB_02225at 2315.675 kb on + strand, within OHPLBJKB_02225at 2315.676 kb on - strand, within OHPLBJKB_02225at 2315.723 kb on - strand, within OHPLBJKB_02225at 2315.723 kb on - strand, within OHPLBJKB_02225at 2315.723 kb on - strand, within OHPLBJKB_02225at 2315.780 kb on + strand, within OHPLBJKB_02225at 2315.836 kb on + strand, within OHPLBJKB_02225at 2315.836 kb on + strand, within OHPLBJKB_02225at 2315.837 kb on - strand, within OHPLBJKB_02225at 2315.837 kb on - strand, within OHPLBJKB_02225at 2315.862 kb on - strand, within OHPLBJKB_02225at 2315.946 kb on + strand, within OHPLBJKB_02225at 2315.946 kb on + strand, within OHPLBJKB_02225at 2315.969 kb on + strand, within OHPLBJKB_02225at 2315.969 kb on + strand, within OHPLBJKB_02225at 2315.970 kb on - strand, within OHPLBJKB_02225at 2315.970 kb on - strand, within OHPLBJKB_02225at 2315.970 kb on - strand, within OHPLBJKB_02225at 2315.970 kb on - strand, within OHPLBJKB_02225at 2315.970 kb on - strand, within OHPLBJKB_02225at 2315.971 kb on + strand, within OHPLBJKB_02225at 2315.971 kb on + strand, within OHPLBJKB_02225at 2315.972 kb on - strand, within OHPLBJKB_02225at 2315.972 kb on - strand, within OHPLBJKB_02225at 2315.979 kb on + strand, within OHPLBJKB_02225at 2315.980 kb on - strand, within OHPLBJKB_02225at 2316.040 kb on + strand, within OHPLBJKB_02225at 2316.040 kb on + strand, within OHPLBJKB_02225at 2316.041 kb on - strand, within OHPLBJKB_02225at 2316.045 kb on + strand, within OHPLBJKB_02225at 2316.073 kb on - strand, within OHPLBJKB_02225at 2316.094 kb on + strand, within OHPLBJKB_02225at 2316.154 kb on + strand, within OHPLBJKB_02225at 2316.155 kb on - strand, within OHPLBJKB_02225

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Per-strain Table

Position Strand Gene LocusTag Fraction Control_HSF
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2,312,782 + OHPLBJKB_02223 0.77 -0.5
2,312,786 + OHPLBJKB_02223 0.77 -0.0
2,312,787 - OHPLBJKB_02223 0.78 +1.8
2,312,787 - OHPLBJKB_02223 0.78 -0.2
2,312,867 + OHPLBJKB_02223 0.80 +0.2
2,312,867 + OHPLBJKB_02223 0.80 -1.0
2,312,868 - OHPLBJKB_02223 0.80 +0.3
2,312,868 - OHPLBJKB_02223 0.80 +0.2
2,312,967 + OHPLBJKB_02223 0.84 -0.4
2,312,997 + OHPLBJKB_02223 0.85 -1.2
2,312,998 - OHPLBJKB_02223 0.85 +0.5
2,313,026 - OHPLBJKB_02223 0.86 -0.3
2,313,026 - OHPLBJKB_02223 0.86 +2.8
2,313,091 - OHPLBJKB_02223 0.88 -0.9
2,313,245 + -1.1
2,313,265 - -2.0
2,313,278 - -0.1
2,313,381 + -0.4
2,313,381 + +0.2
2,313,716 + +0.7
2,313,923 - OHPLBJKB_02224 0.11 -1.8
2,314,951 - OHPLBJKB_02224 0.84 +0.1
2,315,261 - -0.1
2,315,326 + +1.6
2,315,327 - -0.5
2,315,329 + -1.3
2,315,329 + +0.9
2,315,330 - +0.0
2,315,335 + +0.2
2,315,335 + +0.4
2,315,354 - -0.1
2,315,359 + -0.3
2,315,373 + +0.2
2,315,373 + +0.2
2,315,374 - -0.0
2,315,374 - -1.7
2,315,407 - -2.2
2,315,418 - -0.2
2,315,418 - -0.4
2,315,469 + +1.2
2,315,485 - OHPLBJKB_02225 0.10 -2.2
2,315,491 + OHPLBJKB_02225 0.10 -0.2
2,315,492 - OHPLBJKB_02225 0.11 +0.8
2,315,572 + OHPLBJKB_02225 0.16 +1.5
2,315,572 + OHPLBJKB_02225 0.16 -2.2
2,315,573 - OHPLBJKB_02225 0.16 +0.5
2,315,652 - OHPLBJKB_02225 0.21 +1.2
2,315,675 + OHPLBJKB_02225 0.22 -0.4
2,315,676 - OHPLBJKB_02225 0.23 -0.4
2,315,723 - OHPLBJKB_02225 0.26 +1.6
2,315,723 - OHPLBJKB_02225 0.26 -0.1
2,315,723 - OHPLBJKB_02225 0.26 -0.3
2,315,780 + OHPLBJKB_02225 0.29 +0.3
2,315,836 + OHPLBJKB_02225 0.33 +0.8
2,315,836 + OHPLBJKB_02225 0.33 +0.8
2,315,837 - OHPLBJKB_02225 0.33 +0.2
2,315,837 - OHPLBJKB_02225 0.33 +0.2
2,315,862 - OHPLBJKB_02225 0.35 +0.6
2,315,946 + OHPLBJKB_02225 0.40 +0.5
2,315,946 + OHPLBJKB_02225 0.40 +0.6
2,315,969 + OHPLBJKB_02225 0.42 -1.4
2,315,969 + OHPLBJKB_02225 0.42 -0.4
2,315,970 - OHPLBJKB_02225 0.42 -1.4
2,315,970 - OHPLBJKB_02225 0.42 +0.1
2,315,970 - OHPLBJKB_02225 0.42 +0.4
2,315,970 - OHPLBJKB_02225 0.42 +0.0
2,315,970 - OHPLBJKB_02225 0.42 +0.2
2,315,971 + OHPLBJKB_02225 0.42 +0.2
2,315,971 + OHPLBJKB_02225 0.42 +1.2
2,315,972 - OHPLBJKB_02225 0.42 -0.2
2,315,972 - OHPLBJKB_02225 0.42 +0.6
2,315,979 + OHPLBJKB_02225 0.42 +2.0
2,315,980 - OHPLBJKB_02225 0.42 -0.5
2,316,040 + OHPLBJKB_02225 0.46 +0.1
2,316,040 + OHPLBJKB_02225 0.46 -0.4
2,316,041 - OHPLBJKB_02225 0.46 -0.3
2,316,045 + OHPLBJKB_02225 0.47 +0.2
2,316,073 - OHPLBJKB_02225 0.48 +1.2
2,316,094 + OHPLBJKB_02225 0.50 +1.8
2,316,154 + OHPLBJKB_02225 0.54 -1.2
2,316,155 - OHPLBJKB_02225 0.54 -0.8

Or see this region's nucleotide sequence