Strain Fitness in Escherichia coli HS(pFamp)R (ATCC 700891) around OHPLBJKB_02194

Experiment: Control_HSF

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOHPLBJKB_02193 and OHPLBJKB_02194 are separated by 100 nucleotidesOHPLBJKB_02194 and OHPLBJKB_02195 are separated by 63 nucleotidesOHPLBJKB_02195 and OHPLBJKB_02196 overlap by 1 nucleotides OHPLBJKB_02193: OHPLBJKB_02193 - HTH-type transcriptional regulator GltR, at 2,270,137 to 2,271,018 _02193 OHPLBJKB_02194: OHPLBJKB_02194 - Succinate semialdehyde dehydrogenase [NAD(P)+] Sad, at 2,271,119 to 2,272,507 _02194 OHPLBJKB_02195: OHPLBJKB_02195 - Glutaminase 2, at 2,272,571 to 2,273,497 _02195 OHPLBJKB_02196: OHPLBJKB_02196 - hypothetical protein, at 2,273,497 to 2,273,856 _02196 Position (kb) 2271 2272 2273Strain fitness (log2 ratio) -2 -1 0 1 2at 2270.124 kb on + strandat 2270.133 kb on + strandat 2270.134 kb on - strandat 2270.184 kb on + strandat 2270.184 kb on + strandat 2270.185 kb on - strandat 2270.185 kb on - strandat 2270.295 kb on + strand, within OHPLBJKB_02193at 2270.296 kb on - strand, within OHPLBJKB_02193at 2270.308 kb on - strand, within OHPLBJKB_02193at 2270.544 kb on - strand, within OHPLBJKB_02193at 2270.545 kb on + strand, within OHPLBJKB_02193at 2270.568 kb on + strand, within OHPLBJKB_02193at 2270.569 kb on - strand, within OHPLBJKB_02193at 2270.589 kb on + strand, within OHPLBJKB_02193at 2270.617 kb on + strand, within OHPLBJKB_02193at 2270.617 kb on + strand, within OHPLBJKB_02193at 2270.618 kb on - strand, within OHPLBJKB_02193at 2270.618 kb on - strand, within OHPLBJKB_02193at 2270.631 kb on + strand, within OHPLBJKB_02193at 2270.631 kb on + strand, within OHPLBJKB_02193at 2270.817 kb on + strand, within OHPLBJKB_02193at 2270.817 kb on + strand, within OHPLBJKB_02193at 2270.854 kb on + strand, within OHPLBJKB_02193at 2270.854 kb on + strand, within OHPLBJKB_02193at 2271.050 kb on + strandat 2271.053 kb on + strandat 2271.083 kb on + strandat 2271.083 kb on + strandat 2271.091 kb on + strandat 2271.103 kb on + strandat 2271.103 kb on + strandat 2271.113 kb on - strandat 2271.128 kb on - strandat 2271.128 kb on - strandat 2271.266 kb on - strand, within OHPLBJKB_02194at 2271.267 kb on + strand, within OHPLBJKB_02194at 2271.268 kb on - strand, within OHPLBJKB_02194at 2271.268 kb on - strand, within OHPLBJKB_02194at 2271.455 kb on - strand, within OHPLBJKB_02194at 2271.455 kb on - strand, within OHPLBJKB_02194at 2271.517 kb on + strand, within OHPLBJKB_02194at 2271.591 kb on + strand, within OHPLBJKB_02194at 2271.592 kb on - strand, within OHPLBJKB_02194at 2271.592 kb on - strand, within OHPLBJKB_02194at 2271.592 kb on - strand, within OHPLBJKB_02194at 2271.592 kb on - strand, within OHPLBJKB_02194at 2271.592 kb on - strand, within OHPLBJKB_02194at 2271.595 kb on + strand, within OHPLBJKB_02194at 2271.595 kb on + strand, within OHPLBJKB_02194at 2271.595 kb on + strand, within OHPLBJKB_02194at 2271.595 kb on + strand, within OHPLBJKB_02194at 2271.595 kb on + strand, within OHPLBJKB_02194at 2271.596 kb on - strand, within OHPLBJKB_02194at 2271.596 kb on - strand, within OHPLBJKB_02194at 2271.672 kb on + strand, within OHPLBJKB_02194at 2271.672 kb on + strand, within OHPLBJKB_02194at 2271.673 kb on - strand, within OHPLBJKB_02194at 2271.673 kb on - strand, within OHPLBJKB_02194at 2271.673 kb on - strand, within OHPLBJKB_02194at 2271.674 kb on + strand, within OHPLBJKB_02194at 2271.674 kb on + strand, within OHPLBJKB_02194at 2271.841 kb on + strand, within OHPLBJKB_02194at 2271.841 kb on + strand, within OHPLBJKB_02194at 2271.842 kb on - strand, within OHPLBJKB_02194at 2271.918 kb on + strand, within OHPLBJKB_02194at 2271.919 kb on - strand, within OHPLBJKB_02194at 2271.919 kb on - strand, within OHPLBJKB_02194at 2271.919 kb on - strand, within OHPLBJKB_02194at 2271.971 kb on - strand, within OHPLBJKB_02194at 2272.063 kb on - strand, within OHPLBJKB_02194at 2272.150 kb on + strand, within OHPLBJKB_02194at 2272.150 kb on + strand, within OHPLBJKB_02194at 2272.151 kb on - strand, within OHPLBJKB_02194at 2272.154 kb on + strand, within OHPLBJKB_02194at 2272.154 kb on + strand, within OHPLBJKB_02194at 2272.154 kb on + strand, within OHPLBJKB_02194at 2272.155 kb on - strand, within OHPLBJKB_02194at 2272.155 kb on - strand, within OHPLBJKB_02194at 2272.157 kb on + strand, within OHPLBJKB_02194at 2272.339 kb on + strand, within OHPLBJKB_02194at 2272.461 kb on + strandat 2272.474 kb on + strandat 2272.515 kb on + strandat 2272.516 kb on - strandat 2272.516 kb on - strandat 2272.516 kb on - strandat 2272.529 kb on - strandat 2272.531 kb on - strandat 2272.643 kb on - strandat 2272.655 kb on + strandat 2272.656 kb on - strandat 2272.673 kb on - strand, within OHPLBJKB_02195at 2272.678 kb on - strand, within OHPLBJKB_02195at 2272.702 kb on + strand, within OHPLBJKB_02195at 2272.702 kb on + strand, within OHPLBJKB_02195at 2272.898 kb on - strand, within OHPLBJKB_02195at 2272.898 kb on - strand, within OHPLBJKB_02195at 2272.945 kb on + strand, within OHPLBJKB_02195at 2272.981 kb on + strand, within OHPLBJKB_02195at 2272.981 kb on + strand, within OHPLBJKB_02195at 2272.981 kb on + strand, within OHPLBJKB_02195at 2272.981 kb on + strand, within OHPLBJKB_02195at 2272.981 kb on + strand, within OHPLBJKB_02195at 2272.982 kb on - strand, within OHPLBJKB_02195at 2272.982 kb on - strand, within OHPLBJKB_02195at 2272.982 kb on - strand, within OHPLBJKB_02195at 2272.982 kb on - strand, within OHPLBJKB_02195at 2273.020 kb on + strand, within OHPLBJKB_02195at 2273.020 kb on + strand, within OHPLBJKB_02195at 2273.021 kb on - strand, within OHPLBJKB_02195at 2273.027 kb on + strand, within OHPLBJKB_02195at 2273.179 kb on - strand, within OHPLBJKB_02195at 2273.179 kb on - strand, within OHPLBJKB_02195at 2273.224 kb on + strand, within OHPLBJKB_02195at 2273.224 kb on + strand, within OHPLBJKB_02195at 2273.231 kb on - strand, within OHPLBJKB_02195at 2273.296 kb on + strand, within OHPLBJKB_02195at 2273.296 kb on + strand, within OHPLBJKB_02195at 2273.296 kb on + strand, within OHPLBJKB_02195at 2273.296 kb on + strand, within OHPLBJKB_02195at 2273.297 kb on - strand, within OHPLBJKB_02195at 2273.297 kb on - strand, within OHPLBJKB_02195at 2273.297 kb on - strand, within OHPLBJKB_02195at 2273.297 kb on - strand, within OHPLBJKB_02195at 2273.300 kb on + strand, within OHPLBJKB_02195at 2273.300 kb on + strand, within OHPLBJKB_02195at 2273.300 kb on + strand, within OHPLBJKB_02195at 2273.432 kb on - strandat 2273.467 kb on - strandat 2273.496 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Control_HSF
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2,270,124 + -0.0
2,270,133 + +0.5
2,270,134 - -1.1
2,270,184 + +1.2
2,270,184 + +0.1
2,270,185 - +1.0
2,270,185 - -0.6
2,270,295 + OHPLBJKB_02193 0.18 -1.9
2,270,296 - OHPLBJKB_02193 0.18 -0.5
2,270,308 - OHPLBJKB_02193 0.19 -0.7
2,270,544 - OHPLBJKB_02193 0.46 -0.7
2,270,545 + OHPLBJKB_02193 0.46 -1.4
2,270,568 + OHPLBJKB_02193 0.49 -0.1
2,270,569 - OHPLBJKB_02193 0.49 +0.6
2,270,589 + OHPLBJKB_02193 0.51 +0.4
2,270,617 + OHPLBJKB_02193 0.54 -0.9
2,270,617 + OHPLBJKB_02193 0.54 -0.9
2,270,618 - OHPLBJKB_02193 0.55 -1.1
2,270,618 - OHPLBJKB_02193 0.55 -0.0
2,270,631 + OHPLBJKB_02193 0.56 +0.3
2,270,631 + OHPLBJKB_02193 0.56 -0.4
2,270,817 + OHPLBJKB_02193 0.77 +1.0
2,270,817 + OHPLBJKB_02193 0.77 +0.7
2,270,854 + OHPLBJKB_02193 0.81 -0.4
2,270,854 + OHPLBJKB_02193 0.81 -0.4
2,271,050 + -0.2
2,271,053 + +0.9
2,271,083 + -0.0
2,271,083 + +1.0
2,271,091 + +0.4
2,271,103 + -0.9
2,271,103 + +0.5
2,271,113 - +0.2
2,271,128 - -0.0
2,271,128 - +0.8
2,271,266 - OHPLBJKB_02194 0.11 -0.6
2,271,267 + OHPLBJKB_02194 0.11 +0.1
2,271,268 - OHPLBJKB_02194 0.11 -0.5
2,271,268 - OHPLBJKB_02194 0.11 -0.6
2,271,455 - OHPLBJKB_02194 0.24 +0.2
2,271,455 - OHPLBJKB_02194 0.24 -1.1
2,271,517 + OHPLBJKB_02194 0.29 +0.3
2,271,591 + OHPLBJKB_02194 0.34 -1.4
2,271,592 - OHPLBJKB_02194 0.34 +0.7
2,271,592 - OHPLBJKB_02194 0.34 +1.8
2,271,592 - OHPLBJKB_02194 0.34 +0.9
2,271,592 - OHPLBJKB_02194 0.34 -0.4
2,271,592 - OHPLBJKB_02194 0.34 -0.0
2,271,595 + OHPLBJKB_02194 0.34 -0.6
2,271,595 + OHPLBJKB_02194 0.34 -0.9
2,271,595 + OHPLBJKB_02194 0.34 -0.3
2,271,595 + OHPLBJKB_02194 0.34 -0.1
2,271,595 + OHPLBJKB_02194 0.34 -0.6
2,271,596 - OHPLBJKB_02194 0.34 +0.4
2,271,596 - OHPLBJKB_02194 0.34 +0.4
2,271,672 + OHPLBJKB_02194 0.40 +0.1
2,271,672 + OHPLBJKB_02194 0.40 -0.8
2,271,673 - OHPLBJKB_02194 0.40 +0.6
2,271,673 - OHPLBJKB_02194 0.40 +1.1
2,271,673 - OHPLBJKB_02194 0.40 -0.1
2,271,674 + OHPLBJKB_02194 0.40 -0.4
2,271,674 + OHPLBJKB_02194 0.40 -0.2
2,271,841 + OHPLBJKB_02194 0.52 -0.2
2,271,841 + OHPLBJKB_02194 0.52 -0.7
2,271,842 - OHPLBJKB_02194 0.52 +0.4
2,271,918 + OHPLBJKB_02194 0.58 +0.4
2,271,919 - OHPLBJKB_02194 0.58 +0.1
2,271,919 - OHPLBJKB_02194 0.58 -1.9
2,271,919 - OHPLBJKB_02194 0.58 -1.2
2,271,971 - OHPLBJKB_02194 0.61 -1.5
2,272,063 - OHPLBJKB_02194 0.68 -1.5
2,272,150 + OHPLBJKB_02194 0.74 -0.1
2,272,150 + OHPLBJKB_02194 0.74 +1.7
2,272,151 - OHPLBJKB_02194 0.74 -0.8
2,272,154 + OHPLBJKB_02194 0.75 -0.5
2,272,154 + OHPLBJKB_02194 0.75 +0.2
2,272,154 + OHPLBJKB_02194 0.75 -0.5
2,272,155 - OHPLBJKB_02194 0.75 -0.8
2,272,155 - OHPLBJKB_02194 0.75 -2.5
2,272,157 + OHPLBJKB_02194 0.75 -0.8
2,272,339 + OHPLBJKB_02194 0.88 +0.3
2,272,461 + +0.5
2,272,474 + -0.9
2,272,515 + -1.2
2,272,516 - -0.2
2,272,516 - -1.8
2,272,516 - +0.2
2,272,529 - +0.3
2,272,531 - -1.1
2,272,643 - +0.2
2,272,655 + -0.1
2,272,656 - -0.0
2,272,673 - OHPLBJKB_02195 0.11 -0.4
2,272,678 - OHPLBJKB_02195 0.12 +1.2
2,272,702 + OHPLBJKB_02195 0.14 +0.6
2,272,702 + OHPLBJKB_02195 0.14 +0.2
2,272,898 - OHPLBJKB_02195 0.35 +1.6
2,272,898 - OHPLBJKB_02195 0.35 -0.4
2,272,945 + OHPLBJKB_02195 0.40 +0.2
2,272,981 + OHPLBJKB_02195 0.44 -0.8
2,272,981 + OHPLBJKB_02195 0.44 -0.0
2,272,981 + OHPLBJKB_02195 0.44 +0.4
2,272,981 + OHPLBJKB_02195 0.44 +0.6
2,272,981 + OHPLBJKB_02195 0.44 -0.2
2,272,982 - OHPLBJKB_02195 0.44 -0.9
2,272,982 - OHPLBJKB_02195 0.44 -0.1
2,272,982 - OHPLBJKB_02195 0.44 -0.3
2,272,982 - OHPLBJKB_02195 0.44 -0.4
2,273,020 + OHPLBJKB_02195 0.48 -0.4
2,273,020 + OHPLBJKB_02195 0.48 +0.5
2,273,021 - OHPLBJKB_02195 0.49 +0.8
2,273,027 + OHPLBJKB_02195 0.49 -2.4
2,273,179 - OHPLBJKB_02195 0.66 +0.4
2,273,179 - OHPLBJKB_02195 0.66 -0.8
2,273,224 + OHPLBJKB_02195 0.70 +0.2
2,273,224 + OHPLBJKB_02195 0.70 +0.1
2,273,231 - OHPLBJKB_02195 0.71 +0.4
2,273,296 + OHPLBJKB_02195 0.78 -0.6
2,273,296 + OHPLBJKB_02195 0.78 -0.8
2,273,296 + OHPLBJKB_02195 0.78 +0.3
2,273,296 + OHPLBJKB_02195 0.78 +0.5
2,273,297 - OHPLBJKB_02195 0.78 +0.8
2,273,297 - OHPLBJKB_02195 0.78 -0.0
2,273,297 - OHPLBJKB_02195 0.78 +0.2
2,273,297 - OHPLBJKB_02195 0.78 +0.7
2,273,300 + OHPLBJKB_02195 0.79 +0.9
2,273,300 + OHPLBJKB_02195 0.79 -0.2
2,273,300 + OHPLBJKB_02195 0.79 +0.5
2,273,432 - +0.2
2,273,467 - +1.1
2,273,496 - +0.3

Or see this region's nucleotide sequence