Strain Fitness in Escherichia coli HS(pFamp)R (ATCC 700891) around OHPLBJKB_02174

Experiment: Control_HSF

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOHPLBJKB_02172 and OHPLBJKB_02173 are separated by 88 nucleotidesOHPLBJKB_02173 and OHPLBJKB_02174 are separated by 136 nucleotidesOHPLBJKB_02174 and OHPLBJKB_02175 are separated by 44 nucleotidesOHPLBJKB_02175 and OHPLBJKB_02176 are separated by 275 nucleotides OHPLBJKB_02172: OHPLBJKB_02172 - HTH-type transcriptional repressor RspR, at 2,250,538 to 2,251,224 _02172 OHPLBJKB_02173: OHPLBJKB_02173 - NADP-dependent 3-hydroxy acid dehydrogenase YdfG, at 2,251,313 to 2,252,059 _02173 OHPLBJKB_02174: OHPLBJKB_02174 - Dipeptidyl carboxypeptidase, at 2,252,196 to 2,254,241 _02174 OHPLBJKB_02175: OHPLBJKB_02175 - Nicotinamide-nucleotide amidohydrolase PncC, at 2,254,286 to 2,254,804 _02175 OHPLBJKB_02176: OHPLBJKB_02176 - Protein YgiW, at 2,255,080 to 2,255,472 _02176 Position (kb) 2252 2253 2254 2255Strain fitness (log2 ratio) -2 -1 0 1 2at 2251.203 kb on + strandat 2251.247 kb on + strandat 2251.248 kb on - strandat 2251.341 kb on + strandat 2251.341 kb on + strandat 2251.341 kb on + strandat 2251.475 kb on - strand, within OHPLBJKB_02173at 2251.672 kb on + strand, within OHPLBJKB_02173at 2251.673 kb on - strand, within OHPLBJKB_02173at 2251.675 kb on + strand, within OHPLBJKB_02173at 2251.676 kb on - strand, within OHPLBJKB_02173at 2251.676 kb on - strand, within OHPLBJKB_02173at 2251.687 kb on + strand, within OHPLBJKB_02173at 2251.688 kb on - strand, within OHPLBJKB_02173at 2251.724 kb on - strand, within OHPLBJKB_02173at 2251.724 kb on - strand, within OHPLBJKB_02173at 2251.725 kb on + strand, within OHPLBJKB_02173at 2251.725 kb on + strand, within OHPLBJKB_02173at 2251.725 kb on + strand, within OHPLBJKB_02173at 2251.725 kb on + strand, within OHPLBJKB_02173at 2251.725 kb on + strand, within OHPLBJKB_02173at 2251.725 kb on + strand, within OHPLBJKB_02173at 2251.725 kb on + strand, within OHPLBJKB_02173at 2251.726 kb on - strand, within OHPLBJKB_02173at 2251.726 kb on - strand, within OHPLBJKB_02173at 2251.727 kb on + strand, within OHPLBJKB_02173at 2251.727 kb on + strand, within OHPLBJKB_02173at 2251.727 kb on + strand, within OHPLBJKB_02173at 2251.727 kb on + strand, within OHPLBJKB_02173at 2251.728 kb on - strand, within OHPLBJKB_02173at 2251.728 kb on - strand, within OHPLBJKB_02173at 2251.728 kb on - strand, within OHPLBJKB_02173at 2251.728 kb on - strand, within OHPLBJKB_02173at 2251.728 kb on - strand, within OHPLBJKB_02173at 2251.728 kb on - strand, within OHPLBJKB_02173at 2251.728 kb on - strand, within OHPLBJKB_02173at 2251.728 kb on - strand, within OHPLBJKB_02173at 2251.728 kb on - strand, within OHPLBJKB_02173at 2251.728 kb on - strand, within OHPLBJKB_02173at 2251.738 kb on + strand, within OHPLBJKB_02173at 2251.739 kb on - strand, within OHPLBJKB_02173at 2251.832 kb on - strand, within OHPLBJKB_02173at 2251.838 kb on - strand, within OHPLBJKB_02173at 2251.914 kb on + strand, within OHPLBJKB_02173at 2251.915 kb on - strand, within OHPLBJKB_02173at 2251.915 kb on - strand, within OHPLBJKB_02173at 2251.915 kb on - strand, within OHPLBJKB_02173at 2251.921 kb on + strand, within OHPLBJKB_02173at 2251.984 kb on + strand, within OHPLBJKB_02173at 2252.011 kb on + strandat 2252.048 kb on + strandat 2252.091 kb on + strandat 2252.097 kb on - strandat 2252.111 kb on - strandat 2252.124 kb on - strandat 2252.156 kb on - strandat 2252.162 kb on - strandat 2252.162 kb on - strandat 2252.162 kb on - strandat 2252.366 kb on + strandat 2252.366 kb on + strandat 2252.366 kb on + strandat 2252.366 kb on + strandat 2252.366 kb on + strandat 2252.366 kb on + strandat 2252.367 kb on - strandat 2252.367 kb on - strandat 2252.367 kb on - strandat 2252.367 kb on - strandat 2252.367 kb on - strandat 2252.369 kb on + strandat 2252.398 kb on + strandat 2252.398 kb on + strandat 2252.398 kb on + strandat 2252.399 kb on - strandat 2252.399 kb on - strandat 2252.399 kb on - strandat 2252.444 kb on + strand, within OHPLBJKB_02174at 2252.444 kb on + strand, within OHPLBJKB_02174at 2252.458 kb on + strand, within OHPLBJKB_02174at 2252.459 kb on - strand, within OHPLBJKB_02174at 2252.510 kb on + strand, within OHPLBJKB_02174at 2252.510 kb on + strand, within OHPLBJKB_02174at 2252.510 kb on + strand, within OHPLBJKB_02174at 2252.510 kb on + strand, within OHPLBJKB_02174at 2252.511 kb on - strand, within OHPLBJKB_02174at 2252.669 kb on - strand, within OHPLBJKB_02174at 2252.736 kb on - strand, within OHPLBJKB_02174at 2253.037 kb on - strand, within OHPLBJKB_02174at 2253.090 kb on - strand, within OHPLBJKB_02174at 2253.142 kb on + strand, within OHPLBJKB_02174at 2253.151 kb on + strand, within OHPLBJKB_02174at 2253.270 kb on + strand, within OHPLBJKB_02174at 2253.280 kb on + strand, within OHPLBJKB_02174at 2253.305 kb on - strand, within OHPLBJKB_02174at 2253.333 kb on - strand, within OHPLBJKB_02174at 2253.335 kb on + strand, within OHPLBJKB_02174at 2253.525 kb on + strand, within OHPLBJKB_02174at 2253.525 kb on + strand, within OHPLBJKB_02174at 2253.525 kb on + strand, within OHPLBJKB_02174at 2253.541 kb on - strand, within OHPLBJKB_02174at 2253.589 kb on + strand, within OHPLBJKB_02174at 2253.589 kb on + strand, within OHPLBJKB_02174at 2253.590 kb on - strand, within OHPLBJKB_02174at 2253.590 kb on - strand, within OHPLBJKB_02174at 2253.592 kb on + strand, within OHPLBJKB_02174at 2253.737 kb on - strand, within OHPLBJKB_02174at 2253.950 kb on + strand, within OHPLBJKB_02174at 2253.965 kb on + strand, within OHPLBJKB_02174at 2254.030 kb on - strand, within OHPLBJKB_02174at 2254.032 kb on + strand, within OHPLBJKB_02174at 2254.032 kb on + strand, within OHPLBJKB_02174at 2254.149 kb on - strandat 2254.237 kb on + strandat 2254.238 kb on - strandat 2254.239 kb on + strandat 2254.239 kb on + strandat 2254.239 kb on + strandat 2254.239 kb on + strandat 2254.239 kb on + strandat 2254.239 kb on + strandat 2254.239 kb on + strandat 2254.240 kb on - strandat 2254.240 kb on - strandat 2254.240 kb on - strandat 2254.240 kb on - strandat 2254.240 kb on - strandat 2254.240 kb on - strandat 2254.287 kb on + strandat 2254.289 kb on + strandat 2254.289 kb on + strandat 2254.295 kb on + strandat 2254.296 kb on - strandat 2254.332 kb on - strandat 2254.338 kb on - strand, within OHPLBJKB_02175at 2254.341 kb on - strand, within OHPLBJKB_02175at 2254.380 kb on + strand, within OHPLBJKB_02175at 2254.380 kb on + strand, within OHPLBJKB_02175at 2254.394 kb on - strand, within OHPLBJKB_02175at 2254.397 kb on - strand, within OHPLBJKB_02175at 2254.397 kb on - strand, within OHPLBJKB_02175at 2254.429 kb on + strand, within OHPLBJKB_02175at 2254.429 kb on + strand, within OHPLBJKB_02175at 2254.474 kb on + strand, within OHPLBJKB_02175at 2254.500 kb on - strand, within OHPLBJKB_02175at 2254.571 kb on + strand, within OHPLBJKB_02175at 2254.610 kb on - strand, within OHPLBJKB_02175at 2254.610 kb on - strand, within OHPLBJKB_02175at 2254.639 kb on + strand, within OHPLBJKB_02175at 2254.640 kb on - strand, within OHPLBJKB_02175at 2254.640 kb on - strand, within OHPLBJKB_02175at 2254.701 kb on - strand, within OHPLBJKB_02175at 2254.706 kb on + strand, within OHPLBJKB_02175at 2254.707 kb on - strand, within OHPLBJKB_02175at 2254.824 kb on + strandat 2254.825 kb on - strandat 2254.825 kb on - strandat 2254.826 kb on + strandat 2254.867 kb on + strandat 2255.189 kb on + strand, within OHPLBJKB_02176

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Per-strain Table

Position Strand Gene LocusTag Fraction Control_HSF
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2,251,203 + +1.0
2,251,247 + +0.1
2,251,248 - +0.2
2,251,341 + -0.1
2,251,341 + -1.2
2,251,341 + -0.4
2,251,475 - OHPLBJKB_02173 0.22 -1.1
2,251,672 + OHPLBJKB_02173 0.48 -0.1
2,251,673 - OHPLBJKB_02173 0.48 +0.7
2,251,675 + OHPLBJKB_02173 0.48 +0.1
2,251,676 - OHPLBJKB_02173 0.49 +1.0
2,251,676 - OHPLBJKB_02173 0.49 -0.2
2,251,687 + OHPLBJKB_02173 0.50 -1.2
2,251,688 - OHPLBJKB_02173 0.50 +0.9
2,251,724 - OHPLBJKB_02173 0.55 -0.9
2,251,724 - OHPLBJKB_02173 0.55 -1.9
2,251,725 + OHPLBJKB_02173 0.55 -1.1
2,251,725 + OHPLBJKB_02173 0.55 -0.1
2,251,725 + OHPLBJKB_02173 0.55 -1.9
2,251,725 + OHPLBJKB_02173 0.55 +0.5
2,251,725 + OHPLBJKB_02173 0.55 +0.6
2,251,725 + OHPLBJKB_02173 0.55 -0.8
2,251,725 + OHPLBJKB_02173 0.55 -0.1
2,251,726 - OHPLBJKB_02173 0.55 -0.2
2,251,726 - OHPLBJKB_02173 0.55 +0.1
2,251,727 + OHPLBJKB_02173 0.55 -0.4
2,251,727 + OHPLBJKB_02173 0.55 +0.4
2,251,727 + OHPLBJKB_02173 0.55 +1.0
2,251,727 + OHPLBJKB_02173 0.55 +0.8
2,251,728 - OHPLBJKB_02173 0.56 -0.8
2,251,728 - OHPLBJKB_02173 0.56 -0.4
2,251,728 - OHPLBJKB_02173 0.56 -1.6
2,251,728 - OHPLBJKB_02173 0.56 +2.5
2,251,728 - OHPLBJKB_02173 0.56 +0.5
2,251,728 - OHPLBJKB_02173 0.56 +1.6
2,251,728 - OHPLBJKB_02173 0.56 -0.3
2,251,728 - OHPLBJKB_02173 0.56 +0.6
2,251,728 - OHPLBJKB_02173 0.56 +0.1
2,251,728 - OHPLBJKB_02173 0.56 -0.1
2,251,738 + OHPLBJKB_02173 0.57 -0.7
2,251,739 - OHPLBJKB_02173 0.57 +1.0
2,251,832 - OHPLBJKB_02173 0.69 +0.7
2,251,838 - OHPLBJKB_02173 0.70 +0.1
2,251,914 + OHPLBJKB_02173 0.80 +1.0
2,251,915 - OHPLBJKB_02173 0.81 -1.1
2,251,915 - OHPLBJKB_02173 0.81 -0.1
2,251,915 - OHPLBJKB_02173 0.81 +0.1
2,251,921 + OHPLBJKB_02173 0.81 -1.0
2,251,984 + OHPLBJKB_02173 0.90 +1.4
2,252,011 + -0.4
2,252,048 + +1.2
2,252,091 + -1.9
2,252,097 - -1.1
2,252,111 - -0.7
2,252,124 - +0.7
2,252,156 - +0.8
2,252,162 - -0.0
2,252,162 - -0.2
2,252,162 - +1.6
2,252,366 + -0.8
2,252,366 + +1.2
2,252,366 + +0.2
2,252,366 + +0.1
2,252,366 + -1.6
2,252,366 + +0.3
2,252,367 - +1.0
2,252,367 - -1.0
2,252,367 - -1.4
2,252,367 - +0.1
2,252,367 - -0.5
2,252,369 + -0.7
2,252,398 + +0.6
2,252,398 + -0.8
2,252,398 + +0.6
2,252,399 - +0.4
2,252,399 - -0.1
2,252,399 - +0.2
2,252,444 + OHPLBJKB_02174 0.12 -0.7
2,252,444 + OHPLBJKB_02174 0.12 -0.5
2,252,458 + OHPLBJKB_02174 0.13 -0.0
2,252,459 - OHPLBJKB_02174 0.13 +0.1
2,252,510 + OHPLBJKB_02174 0.15 +0.5
2,252,510 + OHPLBJKB_02174 0.15 -0.2
2,252,510 + OHPLBJKB_02174 0.15 +0.4
2,252,510 + OHPLBJKB_02174 0.15 -0.2
2,252,511 - OHPLBJKB_02174 0.15 -0.5
2,252,669 - OHPLBJKB_02174 0.23 -1.4
2,252,736 - OHPLBJKB_02174 0.26 +0.8
2,253,037 - OHPLBJKB_02174 0.41 +0.2
2,253,090 - OHPLBJKB_02174 0.44 -0.4
2,253,142 + OHPLBJKB_02174 0.46 -0.9
2,253,151 + OHPLBJKB_02174 0.47 -1.2
2,253,270 + OHPLBJKB_02174 0.52 -1.0
2,253,280 + OHPLBJKB_02174 0.53 +0.6
2,253,305 - OHPLBJKB_02174 0.54 -1.8
2,253,333 - OHPLBJKB_02174 0.56 -0.5
2,253,335 + OHPLBJKB_02174 0.56 -0.4
2,253,525 + OHPLBJKB_02174 0.65 +1.2
2,253,525 + OHPLBJKB_02174 0.65 +0.6
2,253,525 + OHPLBJKB_02174 0.65 -1.6
2,253,541 - OHPLBJKB_02174 0.66 +0.4
2,253,589 + OHPLBJKB_02174 0.68 +0.5
2,253,589 + OHPLBJKB_02174 0.68 +1.0
2,253,590 - OHPLBJKB_02174 0.68 -0.4
2,253,590 - OHPLBJKB_02174 0.68 -0.9
2,253,592 + OHPLBJKB_02174 0.68 -0.6
2,253,737 - OHPLBJKB_02174 0.75 -1.1
2,253,950 + OHPLBJKB_02174 0.86 -1.6
2,253,965 + OHPLBJKB_02174 0.86 +0.5
2,254,030 - OHPLBJKB_02174 0.90 -0.1
2,254,032 + OHPLBJKB_02174 0.90 -2.5
2,254,032 + OHPLBJKB_02174 0.90 -0.0
2,254,149 - +1.2
2,254,237 + +0.8
2,254,238 - +1.0
2,254,239 + +0.4
2,254,239 + +0.4
2,254,239 + -1.0
2,254,239 + +0.1
2,254,239 + -0.4
2,254,239 + +0.8
2,254,239 + -0.4
2,254,240 - +0.6
2,254,240 - -0.6
2,254,240 - -0.0
2,254,240 - -1.4
2,254,240 - +0.6
2,254,240 - +0.4
2,254,287 + +1.2
2,254,289 + +0.2
2,254,289 + -0.3
2,254,295 + -0.2
2,254,296 - +0.8
2,254,332 - +0.1
2,254,338 - OHPLBJKB_02175 0.10 -0.8
2,254,341 - OHPLBJKB_02175 0.11 +0.5
2,254,380 + OHPLBJKB_02175 0.18 -2.6
2,254,380 + OHPLBJKB_02175 0.18 -0.2
2,254,394 - OHPLBJKB_02175 0.21 +0.2
2,254,397 - OHPLBJKB_02175 0.21 +0.5
2,254,397 - OHPLBJKB_02175 0.21 +1.2
2,254,429 + OHPLBJKB_02175 0.28 -0.1
2,254,429 + OHPLBJKB_02175 0.28 -0.8
2,254,474 + OHPLBJKB_02175 0.36 +0.4
2,254,500 - OHPLBJKB_02175 0.41 +0.3
2,254,571 + OHPLBJKB_02175 0.55 +0.6
2,254,610 - OHPLBJKB_02175 0.62 +0.7
2,254,610 - OHPLBJKB_02175 0.62 -0.4
2,254,639 + OHPLBJKB_02175 0.68 -0.4
2,254,640 - OHPLBJKB_02175 0.68 +0.3
2,254,640 - OHPLBJKB_02175 0.68 +0.2
2,254,701 - OHPLBJKB_02175 0.80 -0.3
2,254,706 + OHPLBJKB_02175 0.81 +1.2
2,254,707 - OHPLBJKB_02175 0.81 -0.2
2,254,824 + -0.1
2,254,825 - +0.8
2,254,825 - -1.2
2,254,826 + -1.6
2,254,867 + +0.9
2,255,189 + OHPLBJKB_02176 0.28 -0.1

Or see this region's nucleotide sequence