Strain Fitness in Escherichia coli HS(pFamp)R (ATCC 700891) around OHPLBJKB_02003

Experiment: Control_HSF

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOHPLBJKB_02001 and OHPLBJKB_02002 are separated by 203 nucleotidesOHPLBJKB_02002 and OHPLBJKB_02003 are separated by 288 nucleotidesOHPLBJKB_02003 and OHPLBJKB_02004 are separated by 3 nucleotides OHPLBJKB_02001: OHPLBJKB_02001 - Catalase HPII, at 2,077,696 to 2,079,957 _02001 OHPLBJKB_02002: OHPLBJKB_02002 - Cell division activator CedA, at 2,080,161 to 2,080,403 _02002 OHPLBJKB_02003: OHPLBJKB_02003 - hypothetical protein, at 2,080,692 to 2,081,495 _02003 OHPLBJKB_02004: OHPLBJKB_02004 - L-cystine uptake protein TcyP, at 2,081,499 to 2,082,890 _02004 Position (kb) 2080 2081 2082Strain fitness (log2 ratio) -2 -1 0 1 2at 2079.746 kb on - strandat 2079.762 kb on + strandat 2079.780 kb on + strandat 2079.977 kb on + strandat 2079.978 kb on - strandat 2080.016 kb on + strandat 2080.016 kb on + strandat 2080.017 kb on - strandat 2080.020 kb on + strandat 2080.020 kb on + strandat 2080.020 kb on + strandat 2080.021 kb on - strandat 2080.021 kb on - strandat 2080.021 kb on - strandat 2080.021 kb on - strandat 2080.021 kb on - strandat 2080.023 kb on - strandat 2080.053 kb on + strandat 2080.077 kb on + strandat 2080.095 kb on + strandat 2080.096 kb on - strandat 2080.196 kb on + strand, within OHPLBJKB_02002at 2080.200 kb on - strand, within OHPLBJKB_02002at 2080.200 kb on - strand, within OHPLBJKB_02002at 2080.203 kb on + strand, within OHPLBJKB_02002at 2080.203 kb on + strand, within OHPLBJKB_02002at 2080.203 kb on + strand, within OHPLBJKB_02002at 2080.203 kb on + strand, within OHPLBJKB_02002at 2080.204 kb on - strand, within OHPLBJKB_02002at 2080.204 kb on - strand, within OHPLBJKB_02002at 2080.204 kb on - strand, within OHPLBJKB_02002at 2080.204 kb on - strand, within OHPLBJKB_02002at 2080.204 kb on - strand, within OHPLBJKB_02002at 2080.204 kb on - strand, within OHPLBJKB_02002at 2080.287 kb on + strand, within OHPLBJKB_02002at 2080.287 kb on + strand, within OHPLBJKB_02002at 2080.288 kb on - strand, within OHPLBJKB_02002at 2080.288 kb on - strand, within OHPLBJKB_02002at 2080.337 kb on + strand, within OHPLBJKB_02002at 2080.435 kb on + strandat 2080.435 kb on + strandat 2080.435 kb on + strandat 2080.436 kb on - strandat 2080.454 kb on + strandat 2080.466 kb on - strandat 2080.631 kb on - strandat 2080.919 kb on + strand, within OHPLBJKB_02003at 2080.932 kb on + strand, within OHPLBJKB_02003at 2080.933 kb on - strand, within OHPLBJKB_02003at 2081.279 kb on + strand, within OHPLBJKB_02003at 2081.408 kb on + strand, within OHPLBJKB_02003at 2081.470 kb on + strandat 2081.494 kb on - strandat 2081.650 kb on - strand, within OHPLBJKB_02004at 2081.978 kb on + strand, within OHPLBJKB_02004at 2082.039 kb on - strand, within OHPLBJKB_02004at 2082.071 kb on + strand, within OHPLBJKB_02004at 2082.071 kb on + strand, within OHPLBJKB_02004at 2082.072 kb on - strand, within OHPLBJKB_02004at 2082.423 kb on - strand, within OHPLBJKB_02004at 2082.430 kb on + strand, within OHPLBJKB_02004at 2082.430 kb on + strand, within OHPLBJKB_02004at 2082.430 kb on + strand, within OHPLBJKB_02004at 2082.430 kb on + strand, within OHPLBJKB_02004at 2082.430 kb on + strand, within OHPLBJKB_02004at 2082.430 kb on + strand, within OHPLBJKB_02004at 2082.430 kb on + strand, within OHPLBJKB_02004at 2082.430 kb on + strand, within OHPLBJKB_02004at 2082.430 kb on + strand, within OHPLBJKB_02004at 2082.430 kb on + strand, within OHPLBJKB_02004at 2082.430 kb on + strand, within OHPLBJKB_02004at 2082.430 kb on + strand, within OHPLBJKB_02004at 2082.431 kb on - strand, within OHPLBJKB_02004at 2082.431 kb on - strand, within OHPLBJKB_02004at 2082.431 kb on - strand, within OHPLBJKB_02004at 2082.431 kb on - strand, within OHPLBJKB_02004at 2082.431 kb on - strand, within OHPLBJKB_02004at 2082.431 kb on - strand, within OHPLBJKB_02004at 2082.431 kb on - strand, within OHPLBJKB_02004at 2082.431 kb on - strand, within OHPLBJKB_02004at 2082.431 kb on - strand, within OHPLBJKB_02004at 2082.431 kb on - strand, within OHPLBJKB_02004at 2082.431 kb on - strand, within OHPLBJKB_02004at 2082.435 kb on - strand, within OHPLBJKB_02004

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Per-strain Table

Position Strand Gene LocusTag Fraction Control_HSF
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2,079,746 - -0.6
2,079,762 + +0.1
2,079,780 + -1.5
2,079,977 + +0.8
2,079,978 - +1.5
2,080,016 + -0.2
2,080,016 + -0.0
2,080,017 - +1.8
2,080,020 + +2.0
2,080,020 + -0.2
2,080,020 + +1.2
2,080,021 - -0.0
2,080,021 - +1.8
2,080,021 - -0.2
2,080,021 - +2.4
2,080,021 - -0.4
2,080,023 - -0.7
2,080,053 + +0.1
2,080,077 + -0.7
2,080,095 + +0.2
2,080,096 - +0.5
2,080,196 + OHPLBJKB_02002 0.14 -0.7
2,080,200 - OHPLBJKB_02002 0.16 -0.8
2,080,200 - OHPLBJKB_02002 0.16 +0.8
2,080,203 + OHPLBJKB_02002 0.17 +0.8
2,080,203 + OHPLBJKB_02002 0.17 +1.0
2,080,203 + OHPLBJKB_02002 0.17 +0.4
2,080,203 + OHPLBJKB_02002 0.17 -2.1
2,080,204 - OHPLBJKB_02002 0.18 -1.8
2,080,204 - OHPLBJKB_02002 0.18 +0.9
2,080,204 - OHPLBJKB_02002 0.18 +0.1
2,080,204 - OHPLBJKB_02002 0.18 -1.2
2,080,204 - OHPLBJKB_02002 0.18 +0.6
2,080,204 - OHPLBJKB_02002 0.18 -0.1
2,080,287 + OHPLBJKB_02002 0.52 -0.8
2,080,287 + OHPLBJKB_02002 0.52 -0.9
2,080,288 - OHPLBJKB_02002 0.52 +0.7
2,080,288 - OHPLBJKB_02002 0.52 +0.2
2,080,337 + OHPLBJKB_02002 0.72 -1.0
2,080,435 + -0.9
2,080,435 + +0.9
2,080,435 + -0.4
2,080,436 - -0.2
2,080,454 + +0.0
2,080,466 - +0.1
2,080,631 - -0.2
2,080,919 + OHPLBJKB_02003 0.28 -0.2
2,080,932 + OHPLBJKB_02003 0.30 -0.3
2,080,933 - OHPLBJKB_02003 0.30 -0.8
2,081,279 + OHPLBJKB_02003 0.73 +0.8
2,081,408 + OHPLBJKB_02003 0.89 -1.6
2,081,470 + -0.1
2,081,494 - -1.0
2,081,650 - OHPLBJKB_02004 0.11 -0.0
2,081,978 + OHPLBJKB_02004 0.34 +1.2
2,082,039 - OHPLBJKB_02004 0.39 +1.1
2,082,071 + OHPLBJKB_02004 0.41 +1.5
2,082,071 + OHPLBJKB_02004 0.41 +1.2
2,082,072 - OHPLBJKB_02004 0.41 +0.7
2,082,423 - OHPLBJKB_02004 0.66 -0.2
2,082,430 + OHPLBJKB_02004 0.67 +2.0
2,082,430 + OHPLBJKB_02004 0.67 +0.1
2,082,430 + OHPLBJKB_02004 0.67 -0.3
2,082,430 + OHPLBJKB_02004 0.67 +2.1
2,082,430 + OHPLBJKB_02004 0.67 -1.1
2,082,430 + OHPLBJKB_02004 0.67 +0.8
2,082,430 + OHPLBJKB_02004 0.67 -0.2
2,082,430 + OHPLBJKB_02004 0.67 +0.2
2,082,430 + OHPLBJKB_02004 0.67 +0.5
2,082,430 + OHPLBJKB_02004 0.67 -0.9
2,082,430 + OHPLBJKB_02004 0.67 -1.4
2,082,430 + OHPLBJKB_02004 0.67 +0.0
2,082,431 - OHPLBJKB_02004 0.67 -1.3
2,082,431 - OHPLBJKB_02004 0.67 +0.4
2,082,431 - OHPLBJKB_02004 0.67 +0.0
2,082,431 - OHPLBJKB_02004 0.67 -1.3
2,082,431 - OHPLBJKB_02004 0.67 +0.7
2,082,431 - OHPLBJKB_02004 0.67 -0.4
2,082,431 - OHPLBJKB_02004 0.67 +0.4
2,082,431 - OHPLBJKB_02004 0.67 -0.7
2,082,431 - OHPLBJKB_02004 0.67 -0.6
2,082,431 - OHPLBJKB_02004 0.67 -0.0
2,082,431 - OHPLBJKB_02004 0.67 +0.2
2,082,435 - OHPLBJKB_02004 0.67 +0.2

Or see this region's nucleotide sequence