Strain Fitness in Escherichia coli HS(pFamp)R (ATCC 700891) around OHPLBJKB_01725

Experiment: Control_HSF

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOHPLBJKB_01723 and OHPLBJKB_01724 are separated by 100 nucleotidesOHPLBJKB_01724 and OHPLBJKB_01725 are separated by 452 nucleotidesOHPLBJKB_01725 and OHPLBJKB_01726 are separated by 342 nucleotides OHPLBJKB_01723: OHPLBJKB_01723 - putative FMN/FAD exporter YeeO, at 1,812,366 to 1,813,820 _01723 OHPLBJKB_01724: OHPLBJKB_01724 - tRNA-Asn, at 1,813,921 to 1,813,996 _01724 OHPLBJKB_01725: OHPLBJKB_01725 - putative transcriptional regulatory protein YeeN, at 1,814,449 to 1,815,165 _01725 OHPLBJKB_01726: OHPLBJKB_01726 - AMP nucleosidase, at 1,815,508 to 1,816,962 _01726 Position (kb) 1814 1815 1816Strain fitness (log2 ratio) -1 0 1at 1813.514 kb on - strand, within OHPLBJKB_01723at 1813.522 kb on + strand, within OHPLBJKB_01723at 1813.522 kb on + strand, within OHPLBJKB_01723at 1813.526 kb on + strand, within OHPLBJKB_01723at 1813.526 kb on + strand, within OHPLBJKB_01723at 1813.526 kb on + strand, within OHPLBJKB_01723at 1813.527 kb on - strand, within OHPLBJKB_01723at 1813.533 kb on - strand, within OHPLBJKB_01723at 1813.569 kb on - strand, within OHPLBJKB_01723at 1813.636 kb on + strand, within OHPLBJKB_01723at 1813.637 kb on - strand, within OHPLBJKB_01723at 1813.637 kb on - strand, within OHPLBJKB_01723at 1813.731 kb on + strandat 1814.019 kb on + strandat 1814.019 kb on + strandat 1814.199 kb on - strandat 1814.199 kb on - strandat 1814.199 kb on - strandat 1814.199 kb on - strandat 1814.271 kb on + strandat 1814.271 kb on + strandat 1814.272 kb on - strandat 1814.668 kb on - strand, within OHPLBJKB_01725at 1814.780 kb on + strand, within OHPLBJKB_01725at 1814.851 kb on - strand, within OHPLBJKB_01725at 1814.915 kb on + strand, within OHPLBJKB_01725at 1814.915 kb on + strand, within OHPLBJKB_01725at 1815.156 kb on + strandat 1815.197 kb on + strandat 1815.234 kb on + strandat 1815.343 kb on + strandat 1815.467 kb on - strandat 1815.619 kb on - strandat 1815.629 kb on + strandat 1815.694 kb on + strand, within OHPLBJKB_01726at 1815.694 kb on + strand, within OHPLBJKB_01726at 1815.695 kb on - strand, within OHPLBJKB_01726at 1815.705 kb on - strand, within OHPLBJKB_01726at 1815.775 kb on + strand, within OHPLBJKB_01726at 1815.803 kb on + strand, within OHPLBJKB_01726at 1815.809 kb on - strand, within OHPLBJKB_01726at 1815.843 kb on + strand, within OHPLBJKB_01726at 1815.843 kb on + strand, within OHPLBJKB_01726at 1815.844 kb on - strand, within OHPLBJKB_01726at 1815.844 kb on - strand, within OHPLBJKB_01726at 1815.844 kb on - strand, within OHPLBJKB_01726at 1815.849 kb on + strand, within OHPLBJKB_01726at 1815.850 kb on - strand, within OHPLBJKB_01726at 1815.850 kb on - strand, within OHPLBJKB_01726at 1815.942 kb on + strand, within OHPLBJKB_01726at 1815.992 kb on + strand, within OHPLBJKB_01726at 1815.993 kb on - strand, within OHPLBJKB_01726at 1815.993 kb on - strand, within OHPLBJKB_01726at 1816.006 kb on + strand, within OHPLBJKB_01726at 1816.007 kb on - strand, within OHPLBJKB_01726at 1816.007 kb on - strand, within OHPLBJKB_01726at 1816.007 kb on - strand, within OHPLBJKB_01726at 1816.010 kb on + strand, within OHPLBJKB_01726at 1816.010 kb on + strand, within OHPLBJKB_01726at 1816.010 kb on + strand, within OHPLBJKB_01726at 1816.011 kb on - strand, within OHPLBJKB_01726at 1816.036 kb on + strand, within OHPLBJKB_01726at 1816.036 kb on + strand, within OHPLBJKB_01726at 1816.078 kb on + strand, within OHPLBJKB_01726at 1816.108 kb on - strand, within OHPLBJKB_01726at 1816.131 kb on + strand, within OHPLBJKB_01726at 1816.143 kb on + strand, within OHPLBJKB_01726

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Per-strain Table

Position Strand Gene LocusTag Fraction Control_HSF
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1,813,514 - OHPLBJKB_01723 0.79 -0.8
1,813,522 + OHPLBJKB_01723 0.79 +0.4
1,813,522 + OHPLBJKB_01723 0.79 -0.1
1,813,526 + OHPLBJKB_01723 0.80 +0.1
1,813,526 + OHPLBJKB_01723 0.80 +0.4
1,813,526 + OHPLBJKB_01723 0.80 +0.6
1,813,527 - OHPLBJKB_01723 0.80 +0.1
1,813,533 - OHPLBJKB_01723 0.80 -0.8
1,813,569 - OHPLBJKB_01723 0.83 +0.2
1,813,636 + OHPLBJKB_01723 0.87 -0.8
1,813,637 - OHPLBJKB_01723 0.87 -0.6
1,813,637 - OHPLBJKB_01723 0.87 -1.4
1,813,731 + +1.2
1,814,019 + -1.0
1,814,019 + +0.1
1,814,199 - -0.7
1,814,199 - -0.0
1,814,199 - -0.2
1,814,199 - -1.1
1,814,271 + +0.0
1,814,271 + -0.3
1,814,272 - -0.5
1,814,668 - OHPLBJKB_01725 0.31 -1.0
1,814,780 + OHPLBJKB_01725 0.46 +1.0
1,814,851 - OHPLBJKB_01725 0.56 -0.3
1,814,915 + OHPLBJKB_01725 0.65 +0.2
1,814,915 + OHPLBJKB_01725 0.65 -0.8
1,815,156 + +0.4
1,815,197 + -0.9
1,815,234 + +0.6
1,815,343 + -0.0
1,815,467 - -0.6
1,815,619 - +0.0
1,815,629 + +0.2
1,815,694 + OHPLBJKB_01726 0.13 +0.5
1,815,694 + OHPLBJKB_01726 0.13 -0.1
1,815,695 - OHPLBJKB_01726 0.13 -0.1
1,815,705 - OHPLBJKB_01726 0.14 +0.1
1,815,775 + OHPLBJKB_01726 0.18 +1.2
1,815,803 + OHPLBJKB_01726 0.20 -0.2
1,815,809 - OHPLBJKB_01726 0.21 +0.2
1,815,843 + OHPLBJKB_01726 0.23 +0.1
1,815,843 + OHPLBJKB_01726 0.23 +0.4
1,815,844 - OHPLBJKB_01726 0.23 +1.2
1,815,844 - OHPLBJKB_01726 0.23 -1.4
1,815,844 - OHPLBJKB_01726 0.23 -0.8
1,815,849 + OHPLBJKB_01726 0.23 -0.5
1,815,850 - OHPLBJKB_01726 0.24 +1.2
1,815,850 - OHPLBJKB_01726 0.24 +0.8
1,815,942 + OHPLBJKB_01726 0.30 -0.4
1,815,992 + OHPLBJKB_01726 0.33 -1.6
1,815,993 - OHPLBJKB_01726 0.33 +0.4
1,815,993 - OHPLBJKB_01726 0.33 +0.5
1,816,006 + OHPLBJKB_01726 0.34 +0.7
1,816,007 - OHPLBJKB_01726 0.34 -0.6
1,816,007 - OHPLBJKB_01726 0.34 -0.1
1,816,007 - OHPLBJKB_01726 0.34 -0.1
1,816,010 + OHPLBJKB_01726 0.35 -1.6
1,816,010 + OHPLBJKB_01726 0.35 -0.7
1,816,010 + OHPLBJKB_01726 0.35 -1.4
1,816,011 - OHPLBJKB_01726 0.35 -1.6
1,816,036 + OHPLBJKB_01726 0.36 -0.1
1,816,036 + OHPLBJKB_01726 0.36 +0.5
1,816,078 + OHPLBJKB_01726 0.39 +0.2
1,816,108 - OHPLBJKB_01726 0.41 -0.2
1,816,131 + OHPLBJKB_01726 0.43 +0.9
1,816,143 + OHPLBJKB_01726 0.44 +0.3

Or see this region's nucleotide sequence