Strain Fitness in Escherichia coli HS(pFamp)R (ATCC 700891) around OHPLBJKB_01652

Experiment: Control_HSF

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOHPLBJKB_01651 and OHPLBJKB_01652 are separated by 102 nucleotidesOHPLBJKB_01652 and OHPLBJKB_01653 are separated by 37 nucleotides OHPLBJKB_01651: OHPLBJKB_01651 - Putative tyrosine-protein kinase in cps region, at 1,735,859 to 1,738,027 _01651 OHPLBJKB_01652: OHPLBJKB_01652 - hypothetical protein, at 1,738,130 to 1,739,557 _01652 OHPLBJKB_01653: OHPLBJKB_01653 - hypothetical protein, at 1,739,595 to 1,740,506 _01653 Position (kb) 1738 1739 1740Strain fitness (log2 ratio) -2 -1 0 1at 1737.441 kb on + strand, within OHPLBJKB_01651at 1737.441 kb on + strand, within OHPLBJKB_01651at 1737.535 kb on + strand, within OHPLBJKB_01651at 1737.568 kb on + strand, within OHPLBJKB_01651at 1737.827 kb on + strandat 1738.085 kb on - strandat 1738.162 kb on + strandat 1738.209 kb on - strandat 1738.699 kb on + strand, within OHPLBJKB_01652at 1739.178 kb on + strand, within OHPLBJKB_01652at 1739.357 kb on + strand, within OHPLBJKB_01652at 1739.571 kb on + strandat 1739.573 kb on + strandat 1739.604 kb on + strandat 1739.734 kb on + strand, within OHPLBJKB_01653at 1739.766 kb on - strand, within OHPLBJKB_01653at 1739.951 kb on + strand, within OHPLBJKB_01653at 1740.130 kb on + strand, within OHPLBJKB_01653

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Per-strain Table

Position Strand Gene LocusTag Fraction Control_HSF
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1,737,441 + OHPLBJKB_01651 0.73 -0.5
1,737,441 + OHPLBJKB_01651 0.73 +0.5
1,737,535 + OHPLBJKB_01651 0.77 +0.4
1,737,568 + OHPLBJKB_01651 0.79 -0.3
1,737,827 + +0.1
1,738,085 - -0.4
1,738,162 + +0.6
1,738,209 - +0.2
1,738,699 + OHPLBJKB_01652 0.40 -0.1
1,739,178 + OHPLBJKB_01652 0.73 -2.4
1,739,357 + OHPLBJKB_01652 0.86 -0.8
1,739,571 + +1.2
1,739,573 + +0.1
1,739,604 + +0.6
1,739,734 + OHPLBJKB_01653 0.15 +1.2
1,739,766 - OHPLBJKB_01653 0.19 -1.1
1,739,951 + OHPLBJKB_01653 0.39 -0.6
1,740,130 + OHPLBJKB_01653 0.59 +0.4

Or see this region's nucleotide sequence