Strain Fitness in Escherichia coli HS(pFamp)R (ATCC 700891) around OHPLBJKB_01620

Experiment: Control_HSF

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOHPLBJKB_01619 and OHPLBJKB_01620 are separated by 99 nucleotidesOHPLBJKB_01620 and OHPLBJKB_01621 are separated by 81 nucleotides OHPLBJKB_01619: OHPLBJKB_01619 - Galactitol 1-phosphate 5-dehydrogenase, at 1,695,402 to 1,696,442 _01619 OHPLBJKB_01620: OHPLBJKB_01620 - Glucitol operon repressor, at 1,696,542 to 1,697,321 _01620 OHPLBJKB_01621: OHPLBJKB_01621 - Lipid kinase YegS, at 1,697,403 to 1,698,302 _01621 Position (kb) 1696 1697 1698Strain fitness (log2 ratio) -2 -1 0 1 2at 1695.593 kb on + strand, within OHPLBJKB_01619at 1695.593 kb on + strand, within OHPLBJKB_01619at 1695.760 kb on - strand, within OHPLBJKB_01619at 1695.760 kb on - strand, within OHPLBJKB_01619at 1695.896 kb on + strand, within OHPLBJKB_01619at 1695.980 kb on + strand, within OHPLBJKB_01619at 1695.980 kb on + strand, within OHPLBJKB_01619at 1695.980 kb on + strand, within OHPLBJKB_01619at 1695.980 kb on + strand, within OHPLBJKB_01619at 1695.981 kb on - strand, within OHPLBJKB_01619at 1696.031 kb on + strand, within OHPLBJKB_01619at 1696.032 kb on - strand, within OHPLBJKB_01619at 1696.204 kb on + strand, within OHPLBJKB_01619at 1696.204 kb on + strand, within OHPLBJKB_01619at 1696.205 kb on - strand, within OHPLBJKB_01619at 1696.229 kb on - strand, within OHPLBJKB_01619at 1696.236 kb on - strand, within OHPLBJKB_01619at 1696.269 kb on + strand, within OHPLBJKB_01619at 1696.270 kb on - strand, within OHPLBJKB_01619at 1696.328 kb on + strand, within OHPLBJKB_01619at 1696.328 kb on + strand, within OHPLBJKB_01619at 1696.329 kb on - strand, within OHPLBJKB_01619at 1696.329 kb on - strand, within OHPLBJKB_01619at 1696.333 kb on + strand, within OHPLBJKB_01619at 1696.412 kb on + strandat 1696.413 kb on - strandat 1696.515 kb on - strandat 1696.539 kb on + strandat 1696.539 kb on + strandat 1696.540 kb on - strandat 1696.631 kb on - strand, within OHPLBJKB_01620at 1696.631 kb on - strand, within OHPLBJKB_01620at 1696.868 kb on + strand, within OHPLBJKB_01620at 1697.323 kb on - strandat 1697.595 kb on + strand, within OHPLBJKB_01621at 1697.711 kb on + strand, within OHPLBJKB_01621at 1697.797 kb on - strand, within OHPLBJKB_01621at 1697.864 kb on + strand, within OHPLBJKB_01621at 1697.865 kb on - strand, within OHPLBJKB_01621at 1697.898 kb on - strand, within OHPLBJKB_01621at 1697.931 kb on + strand, within OHPLBJKB_01621at 1697.932 kb on - strand, within OHPLBJKB_01621at 1698.049 kb on - strand, within OHPLBJKB_01621at 1698.157 kb on + strand, within OHPLBJKB_01621at 1698.157 kb on + strand, within OHPLBJKB_01621at 1698.158 kb on - strand, within OHPLBJKB_01621at 1698.158 kb on - strand, within OHPLBJKB_01621at 1698.227 kb on + strandat 1698.227 kb on + strandat 1698.227 kb on + strandat 1698.228 kb on - strandat 1698.246 kb on + strandat 1698.309 kb on - strandat 1698.309 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Control_HSF
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1,695,593 + OHPLBJKB_01619 0.18 -0.8
1,695,593 + OHPLBJKB_01619 0.18 -0.2
1,695,760 - OHPLBJKB_01619 0.34 +1.8
1,695,760 - OHPLBJKB_01619 0.34 -1.1
1,695,896 + OHPLBJKB_01619 0.47 -0.4
1,695,980 + OHPLBJKB_01619 0.56 -0.4
1,695,980 + OHPLBJKB_01619 0.56 -0.3
1,695,980 + OHPLBJKB_01619 0.56 +0.6
1,695,980 + OHPLBJKB_01619 0.56 -0.6
1,695,981 - OHPLBJKB_01619 0.56 +0.8
1,696,031 + OHPLBJKB_01619 0.60 +1.3
1,696,032 - OHPLBJKB_01619 0.61 -0.5
1,696,204 + OHPLBJKB_01619 0.77 -0.3
1,696,204 + OHPLBJKB_01619 0.77 -1.2
1,696,205 - OHPLBJKB_01619 0.77 +0.5
1,696,229 - OHPLBJKB_01619 0.79 -2.7
1,696,236 - OHPLBJKB_01619 0.80 -0.4
1,696,269 + OHPLBJKB_01619 0.83 -0.1
1,696,270 - OHPLBJKB_01619 0.83 -0.5
1,696,328 + OHPLBJKB_01619 0.89 +0.2
1,696,328 + OHPLBJKB_01619 0.89 -0.8
1,696,329 - OHPLBJKB_01619 0.89 -2.0
1,696,329 - OHPLBJKB_01619 0.89 -0.5
1,696,333 + OHPLBJKB_01619 0.89 -1.4
1,696,412 + -1.6
1,696,413 - -0.4
1,696,515 - -0.5
1,696,539 + -0.1
1,696,539 + +0.6
1,696,540 - +0.0
1,696,631 - OHPLBJKB_01620 0.11 -1.9
1,696,631 - OHPLBJKB_01620 0.11 -0.5
1,696,868 + OHPLBJKB_01620 0.42 +0.1
1,697,323 - +0.4
1,697,595 + OHPLBJKB_01621 0.21 +0.6
1,697,711 + OHPLBJKB_01621 0.34 -0.1
1,697,797 - OHPLBJKB_01621 0.44 -0.6
1,697,864 + OHPLBJKB_01621 0.51 +0.1
1,697,865 - OHPLBJKB_01621 0.51 +0.0
1,697,898 - OHPLBJKB_01621 0.55 -0.9
1,697,931 + OHPLBJKB_01621 0.59 -2.4
1,697,932 - OHPLBJKB_01621 0.59 +1.2
1,698,049 - OHPLBJKB_01621 0.72 +0.2
1,698,157 + OHPLBJKB_01621 0.84 +0.1
1,698,157 + OHPLBJKB_01621 0.84 -0.9
1,698,158 - OHPLBJKB_01621 0.84 -0.8
1,698,158 - OHPLBJKB_01621 0.84 +0.0
1,698,227 + -0.2
1,698,227 + -0.4
1,698,227 + +0.4
1,698,228 - -0.3
1,698,246 + -0.5
1,698,309 - +0.1
1,698,309 - +0.1

Or see this region's nucleotide sequence