Strain Fitness in Escherichia coli HS(pFamp)R (ATCC 700891) around OHPLBJKB_01430

Experiment: Control_HSF

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntOHPLBJKB_01429 and OHPLBJKB_01430 are separated by 6 nucleotidesOHPLBJKB_01430 and OHPLBJKB_01431 are separated by 83 nucleotidesOHPLBJKB_01431 and OHPLBJKB_01432 are separated by 58 nucleotides OHPLBJKB_01429: OHPLBJKB_01429 - NADH-quinone oxidoreductase subunit M, at 1,476,014 to 1,477,543 _01429 OHPLBJKB_01430: OHPLBJKB_01430 - NADH-quinone oxidoreductase subunit N, at 1,477,550 to 1,479,007 _01430 OHPLBJKB_01431: OHPLBJKB_01431 - hypothetical protein, at 1,479,091 to 1,479,939 _01431 OHPLBJKB_01432: OHPLBJKB_01432 - hypothetical protein, at 1,479,998 to 1,480,420 _01432 Position (kb) 1477 1478 1479 1480Strain fitness (log2 ratio) -2 -1 0 1 2at 1476.602 kb on + strand, within OHPLBJKB_01429at 1476.649 kb on + strand, within OHPLBJKB_01429at 1476.674 kb on + strand, within OHPLBJKB_01429at 1476.681 kb on + strand, within OHPLBJKB_01429at 1476.884 kb on - strand, within OHPLBJKB_01429at 1476.884 kb on - strand, within OHPLBJKB_01429at 1476.962 kb on + strand, within OHPLBJKB_01429at 1476.963 kb on - strand, within OHPLBJKB_01429at 1476.963 kb on - strand, within OHPLBJKB_01429at 1477.004 kb on + strand, within OHPLBJKB_01429at 1477.004 kb on + strand, within OHPLBJKB_01429at 1477.109 kb on - strand, within OHPLBJKB_01429at 1477.237 kb on + strand, within OHPLBJKB_01429at 1477.332 kb on + strand, within OHPLBJKB_01429at 1477.516 kb on + strandat 1477.529 kb on - strandat 1477.841 kb on + strand, within OHPLBJKB_01430at 1477.879 kb on - strand, within OHPLBJKB_01430at 1478.025 kb on - strand, within OHPLBJKB_01430at 1478.082 kb on - strand, within OHPLBJKB_01430at 1478.137 kb on + strand, within OHPLBJKB_01430at 1478.238 kb on + strand, within OHPLBJKB_01430at 1478.238 kb on + strand, within OHPLBJKB_01430at 1478.238 kb on + strand, within OHPLBJKB_01430at 1478.239 kb on - strand, within OHPLBJKB_01430at 1478.239 kb on - strand, within OHPLBJKB_01430at 1478.240 kb on + strand, within OHPLBJKB_01430at 1478.327 kb on + strand, within OHPLBJKB_01430at 1478.328 kb on - strand, within OHPLBJKB_01430at 1478.455 kb on + strand, within OHPLBJKB_01430at 1478.456 kb on - strand, within OHPLBJKB_01430at 1478.456 kb on - strand, within OHPLBJKB_01430at 1478.456 kb on - strand, within OHPLBJKB_01430at 1478.738 kb on + strand, within OHPLBJKB_01430at 1478.819 kb on + strand, within OHPLBJKB_01430at 1478.823 kb on - strand, within OHPLBJKB_01430at 1479.005 kb on + strandat 1479.005 kb on + strandat 1479.005 kb on + strandat 1479.005 kb on + strandat 1479.005 kb on + strandat 1479.021 kb on - strandat 1479.074 kb on + strandat 1479.074 kb on + strandat 1479.074 kb on + strandat 1479.074 kb on + strandat 1479.074 kb on + strandat 1479.075 kb on - strandat 1479.075 kb on - strandat 1479.093 kb on - strandat 1479.105 kb on + strandat 1479.133 kb on + strandat 1479.134 kb on - strandat 1479.166 kb on - strandat 1479.176 kb on + strand, within OHPLBJKB_01431at 1479.221 kb on + strand, within OHPLBJKB_01431at 1479.226 kb on - strand, within OHPLBJKB_01431at 1479.230 kb on - strand, within OHPLBJKB_01431at 1479.303 kb on + strand, within OHPLBJKB_01431at 1479.304 kb on - strand, within OHPLBJKB_01431at 1479.331 kb on - strand, within OHPLBJKB_01431at 1479.458 kb on + strand, within OHPLBJKB_01431at 1479.466 kb on - strand, within OHPLBJKB_01431at 1479.572 kb on - strand, within OHPLBJKB_01431at 1479.721 kb on - strand, within OHPLBJKB_01431at 1479.739 kb on + strand, within OHPLBJKB_01431at 1479.775 kb on + strand, within OHPLBJKB_01431at 1479.776 kb on - strand, within OHPLBJKB_01431at 1479.776 kb on - strand, within OHPLBJKB_01431at 1479.777 kb on + strand, within OHPLBJKB_01431at 1479.777 kb on + strand, within OHPLBJKB_01431at 1479.777 kb on + strand, within OHPLBJKB_01431at 1479.777 kb on + strand, within OHPLBJKB_01431at 1479.778 kb on - strand, within OHPLBJKB_01431at 1479.778 kb on - strand, within OHPLBJKB_01431at 1479.778 kb on - strand, within OHPLBJKB_01431at 1479.778 kb on - strand, within OHPLBJKB_01431at 1479.778 kb on - strand, within OHPLBJKB_01431at 1479.781 kb on + strand, within OHPLBJKB_01431at 1479.786 kb on + strand, within OHPLBJKB_01431at 1479.787 kb on - strand, within OHPLBJKB_01431at 1479.787 kb on - strand, within OHPLBJKB_01431at 1479.787 kb on - strand, within OHPLBJKB_01431at 1479.787 kb on - strand, within OHPLBJKB_01431at 1479.809 kb on + strand, within OHPLBJKB_01431at 1479.810 kb on - strand, within OHPLBJKB_01431at 1479.836 kb on + strand, within OHPLBJKB_01431at 1479.849 kb on + strand, within OHPLBJKB_01431at 1479.849 kb on + strand, within OHPLBJKB_01431at 1479.849 kb on + strand, within OHPLBJKB_01431at 1479.849 kb on + strand, within OHPLBJKB_01431at 1479.850 kb on - strand, within OHPLBJKB_01431at 1479.913 kb on - strandat 1479.913 kb on - strandat 1479.931 kb on - strandat 1479.967 kb on - strandat 1479.987 kb on - strandat 1479.991 kb on - strandat 1480.000 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Control_HSF
remove
1,476,602 + OHPLBJKB_01429 0.38 -0.3
1,476,649 + OHPLBJKB_01429 0.42 -1.9
1,476,674 + OHPLBJKB_01429 0.43 -0.3
1,476,681 + OHPLBJKB_01429 0.44 -0.3
1,476,884 - OHPLBJKB_01429 0.57 -1.7
1,476,884 - OHPLBJKB_01429 0.57 -0.6
1,476,962 + OHPLBJKB_01429 0.62 -0.3
1,476,963 - OHPLBJKB_01429 0.62 -2.3
1,476,963 - OHPLBJKB_01429 0.62 -0.3
1,477,004 + OHPLBJKB_01429 0.65 -0.7
1,477,004 + OHPLBJKB_01429 0.65 -0.9
1,477,109 - OHPLBJKB_01429 0.72 +0.3
1,477,237 + OHPLBJKB_01429 0.80 -1.5
1,477,332 + OHPLBJKB_01429 0.86 -0.3
1,477,516 + -0.1
1,477,529 - +0.3
1,477,841 + OHPLBJKB_01430 0.20 +0.3
1,477,879 - OHPLBJKB_01430 0.23 -0.7
1,478,025 - OHPLBJKB_01430 0.33 -0.3
1,478,082 - OHPLBJKB_01430 0.36 -0.3
1,478,137 + OHPLBJKB_01430 0.40 -0.3
1,478,238 + OHPLBJKB_01430 0.47 -1.0
1,478,238 + OHPLBJKB_01430 0.47 +1.0
1,478,238 + OHPLBJKB_01430 0.47 +1.3
1,478,239 - OHPLBJKB_01430 0.47 +0.7
1,478,239 - OHPLBJKB_01430 0.47 +0.3
1,478,240 + OHPLBJKB_01430 0.47 -1.2
1,478,327 + OHPLBJKB_01430 0.53 -0.3
1,478,328 - OHPLBJKB_01430 0.53 -0.7
1,478,455 + OHPLBJKB_01430 0.62 -0.3
1,478,456 - OHPLBJKB_01430 0.62 +0.1
1,478,456 - OHPLBJKB_01430 0.62 -1.3
1,478,456 - OHPLBJKB_01430 0.62 -2.3
1,478,738 + OHPLBJKB_01430 0.81 +0.9
1,478,819 + OHPLBJKB_01430 0.87 -0.8
1,478,823 - OHPLBJKB_01430 0.87 -0.5
1,479,005 + -1.4
1,479,005 + -1.3
1,479,005 + -0.4
1,479,005 + +1.9
1,479,005 + -1.2
1,479,021 - -0.7
1,479,074 + -0.4
1,479,074 + +0.6
1,479,074 + +0.1
1,479,074 + +1.3
1,479,074 + -0.5
1,479,075 - -0.9
1,479,075 - +0.0
1,479,093 - +0.3
1,479,105 + -0.0
1,479,133 + +0.5
1,479,134 - -0.6
1,479,166 - -0.4
1,479,176 + OHPLBJKB_01431 0.10 +0.3
1,479,221 + OHPLBJKB_01431 0.15 -1.3
1,479,226 - OHPLBJKB_01431 0.16 +0.8
1,479,230 - OHPLBJKB_01431 0.16 +0.9
1,479,303 + OHPLBJKB_01431 0.25 -1.0
1,479,304 - OHPLBJKB_01431 0.25 +1.6
1,479,331 - OHPLBJKB_01431 0.28 +1.3
1,479,458 + OHPLBJKB_01431 0.43 +0.5
1,479,466 - OHPLBJKB_01431 0.44 +0.6
1,479,572 - OHPLBJKB_01431 0.57 +0.5
1,479,721 - OHPLBJKB_01431 0.74 -1.3
1,479,739 + OHPLBJKB_01431 0.76 +0.9
1,479,775 + OHPLBJKB_01431 0.81 -0.4
1,479,776 - OHPLBJKB_01431 0.81 +1.3
1,479,776 - OHPLBJKB_01431 0.81 -0.3
1,479,777 + OHPLBJKB_01431 0.81 -0.3
1,479,777 + OHPLBJKB_01431 0.81 -0.8
1,479,777 + OHPLBJKB_01431 0.81 +0.1
1,479,777 + OHPLBJKB_01431 0.81 -0.0
1,479,778 - OHPLBJKB_01431 0.81 -1.4
1,479,778 - OHPLBJKB_01431 0.81 +0.2
1,479,778 - OHPLBJKB_01431 0.81 -0.0
1,479,778 - OHPLBJKB_01431 0.81 +0.4
1,479,778 - OHPLBJKB_01431 0.81 +0.3
1,479,781 + OHPLBJKB_01431 0.81 -0.1
1,479,786 + OHPLBJKB_01431 0.82 +0.2
1,479,787 - OHPLBJKB_01431 0.82 +0.5
1,479,787 - OHPLBJKB_01431 0.82 -0.2
1,479,787 - OHPLBJKB_01431 0.82 +1.0
1,479,787 - OHPLBJKB_01431 0.82 +0.9
1,479,809 + OHPLBJKB_01431 0.85 -0.7
1,479,810 - OHPLBJKB_01431 0.85 +0.8
1,479,836 + OHPLBJKB_01431 0.88 +0.4
1,479,849 + OHPLBJKB_01431 0.89 +0.2
1,479,849 + OHPLBJKB_01431 0.89 +0.5
1,479,849 + OHPLBJKB_01431 0.89 +0.3
1,479,849 + OHPLBJKB_01431 0.89 +1.0
1,479,850 - OHPLBJKB_01431 0.89 +0.1
1,479,913 - +0.3
1,479,913 - +1.2
1,479,931 - +0.3
1,479,967 - -0.3
1,479,987 - -0.0
1,479,991 - -1.2
1,480,000 - +0.9

Or see this region's nucleotide sequence