Strain Fitness in Escherichia coli HS(pFamp)R (ATCC 700891) around OHPLBJKB_01423

Experiment: Control_HSF

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOHPLBJKB_01422 and OHPLBJKB_01423 are separated by 52 nucleotidesOHPLBJKB_01423 and OHPLBJKB_01424 overlap by 4 nucleotidesOHPLBJKB_01424 and OHPLBJKB_01425 are separated by 14 nucleotides OHPLBJKB_01422: OHPLBJKB_01422 - NADH-quinone oxidoreductase subunit F, at 1,467,500 to 1,468,837 _01422 OHPLBJKB_01423: OHPLBJKB_01423 - NADH-quinone oxidoreductase subunit G, at 1,468,890 to 1,471,616 _01423 OHPLBJKB_01424: OHPLBJKB_01424 - NADH-quinone oxidoreductase subunit H, at 1,471,613 to 1,472,590 _01424 OHPLBJKB_01425: OHPLBJKB_01425 - NADH-quinone oxidoreductase subunit I, at 1,472,605 to 1,473,147 _01425 Position (kb) 1468 1469 1470 1471 1472Strain fitness (log2 ratio) -2 -1 0 1 2at 1467.905 kb on + strand, within OHPLBJKB_01422at 1467.906 kb on - strand, within OHPLBJKB_01422at 1467.906 kb on - strand, within OHPLBJKB_01422at 1467.922 kb on - strand, within OHPLBJKB_01422at 1467.980 kb on - strand, within OHPLBJKB_01422at 1468.032 kb on - strand, within OHPLBJKB_01422at 1468.033 kb on + strand, within OHPLBJKB_01422at 1468.034 kb on - strand, within OHPLBJKB_01422at 1468.168 kb on + strand, within OHPLBJKB_01422at 1468.301 kb on - strand, within OHPLBJKB_01422at 1468.328 kb on + strand, within OHPLBJKB_01422at 1468.520 kb on - strand, within OHPLBJKB_01422at 1468.561 kb on + strand, within OHPLBJKB_01422at 1468.889 kb on - strandat 1468.889 kb on - strandat 1468.906 kb on + strandat 1468.906 kb on + strandat 1468.907 kb on - strandat 1468.907 kb on - strandat 1469.288 kb on + strand, within OHPLBJKB_01423at 1469.297 kb on + strand, within OHPLBJKB_01423at 1469.298 kb on - strand, within OHPLBJKB_01423at 1469.407 kb on - strand, within OHPLBJKB_01423at 1469.504 kb on - strand, within OHPLBJKB_01423at 1469.540 kb on + strand, within OHPLBJKB_01423at 1469.540 kb on + strand, within OHPLBJKB_01423at 1469.541 kb on - strand, within OHPLBJKB_01423at 1469.595 kb on - strand, within OHPLBJKB_01423at 1469.667 kb on + strand, within OHPLBJKB_01423at 1469.668 kb on - strand, within OHPLBJKB_01423at 1469.704 kb on - strand, within OHPLBJKB_01423at 1469.801 kb on + strand, within OHPLBJKB_01423at 1469.902 kb on - strand, within OHPLBJKB_01423at 1469.902 kb on - strand, within OHPLBJKB_01423at 1469.973 kb on + strand, within OHPLBJKB_01423at 1469.973 kb on + strand, within OHPLBJKB_01423at 1469.973 kb on + strand, within OHPLBJKB_01423at 1469.973 kb on + strand, within OHPLBJKB_01423at 1469.974 kb on - strand, within OHPLBJKB_01423at 1469.974 kb on - strand, within OHPLBJKB_01423at 1469.974 kb on - strand, within OHPLBJKB_01423at 1470.213 kb on - strand, within OHPLBJKB_01423at 1470.259 kb on + strand, within OHPLBJKB_01423at 1470.260 kb on - strand, within OHPLBJKB_01423at 1470.384 kb on - strand, within OHPLBJKB_01423at 1470.405 kb on - strand, within OHPLBJKB_01423at 1470.409 kb on + strand, within OHPLBJKB_01423at 1470.409 kb on + strand, within OHPLBJKB_01423at 1470.789 kb on + strand, within OHPLBJKB_01423at 1470.801 kb on + strand, within OHPLBJKB_01423at 1470.804 kb on + strand, within OHPLBJKB_01423at 1470.844 kb on + strand, within OHPLBJKB_01423at 1470.844 kb on + strand, within OHPLBJKB_01423at 1470.844 kb on + strand, within OHPLBJKB_01423at 1470.945 kb on - strand, within OHPLBJKB_01423at 1471.026 kb on - strand, within OHPLBJKB_01423at 1471.076 kb on + strand, within OHPLBJKB_01423at 1471.272 kb on + strand, within OHPLBJKB_01423at 1471.322 kb on + strand, within OHPLBJKB_01423at 1471.335 kb on + strand, within OHPLBJKB_01423at 1471.404 kb on + strandat 1471.405 kb on - strandat 1471.454 kb on + strandat 1471.551 kb on - strandat 1471.759 kb on + strand, within OHPLBJKB_01424at 1471.760 kb on - strand, within OHPLBJKB_01424at 1472.024 kb on - strand, within OHPLBJKB_01424at 1472.024 kb on - strand, within OHPLBJKB_01424at 1472.204 kb on - strand, within OHPLBJKB_01424at 1472.336 kb on + strand, within OHPLBJKB_01424at 1472.336 kb on + strand, within OHPLBJKB_01424at 1472.336 kb on + strand, within OHPLBJKB_01424at 1472.337 kb on - strand, within OHPLBJKB_01424at 1472.337 kb on - strand, within OHPLBJKB_01424at 1472.337 kb on - strand, within OHPLBJKB_01424

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Per-strain Table

Position Strand Gene LocusTag Fraction Control_HSF
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1,467,905 + OHPLBJKB_01422 0.30 -0.0
1,467,906 - OHPLBJKB_01422 0.30 +0.3
1,467,906 - OHPLBJKB_01422 0.30 +0.3
1,467,922 - OHPLBJKB_01422 0.32 -1.7
1,467,980 - OHPLBJKB_01422 0.36 -0.6
1,468,032 - OHPLBJKB_01422 0.40 -1.0
1,468,033 + OHPLBJKB_01422 0.40 -2.0
1,468,034 - OHPLBJKB_01422 0.40 -1.5
1,468,168 + OHPLBJKB_01422 0.50 +1.3
1,468,301 - OHPLBJKB_01422 0.60 +0.9
1,468,328 + OHPLBJKB_01422 0.62 +0.7
1,468,520 - OHPLBJKB_01422 0.76 -1.7
1,468,561 + OHPLBJKB_01422 0.79 -0.7
1,468,889 - +0.7
1,468,889 - -1.2
1,468,906 + -0.3
1,468,906 + -1.3
1,468,907 - +0.3
1,468,907 - +0.1
1,469,288 + OHPLBJKB_01423 0.15 +0.9
1,469,297 + OHPLBJKB_01423 0.15 -1.5
1,469,298 - OHPLBJKB_01423 0.15 -0.7
1,469,407 - OHPLBJKB_01423 0.19 -1.3
1,469,504 - OHPLBJKB_01423 0.23 -1.5
1,469,540 + OHPLBJKB_01423 0.24 -0.1
1,469,540 + OHPLBJKB_01423 0.24 -2.0
1,469,541 - OHPLBJKB_01423 0.24 -1.5
1,469,595 - OHPLBJKB_01423 0.26 -0.5
1,469,667 + OHPLBJKB_01423 0.28 -1.6
1,469,668 - OHPLBJKB_01423 0.29 -0.7
1,469,704 - OHPLBJKB_01423 0.30 +1.3
1,469,801 + OHPLBJKB_01423 0.33 -1.0
1,469,902 - OHPLBJKB_01423 0.37 -0.5
1,469,902 - OHPLBJKB_01423 0.37 +0.7
1,469,973 + OHPLBJKB_01423 0.40 -1.0
1,469,973 + OHPLBJKB_01423 0.40 -0.3
1,469,973 + OHPLBJKB_01423 0.40 +0.1
1,469,973 + OHPLBJKB_01423 0.40 -0.1
1,469,974 - OHPLBJKB_01423 0.40 -0.0
1,469,974 - OHPLBJKB_01423 0.40 +0.3
1,469,974 - OHPLBJKB_01423 0.40 -1.9
1,470,213 - OHPLBJKB_01423 0.49 -1.0
1,470,259 + OHPLBJKB_01423 0.50 -1.2
1,470,260 - OHPLBJKB_01423 0.50 +0.1
1,470,384 - OHPLBJKB_01423 0.55 +0.1
1,470,405 - OHPLBJKB_01423 0.56 -0.3
1,470,409 + OHPLBJKB_01423 0.56 -1.5
1,470,409 + OHPLBJKB_01423 0.56 +1.3
1,470,789 + OHPLBJKB_01423 0.70 -1.3
1,470,801 + OHPLBJKB_01423 0.70 -0.5
1,470,804 + OHPLBJKB_01423 0.70 +0.3
1,470,844 + OHPLBJKB_01423 0.72 +0.2
1,470,844 + OHPLBJKB_01423 0.72 +1.9
1,470,844 + OHPLBJKB_01423 0.72 +0.1
1,470,945 - OHPLBJKB_01423 0.75 +0.0
1,471,026 - OHPLBJKB_01423 0.78 -0.1
1,471,076 + OHPLBJKB_01423 0.80 -0.3
1,471,272 + OHPLBJKB_01423 0.87 +0.7
1,471,322 + OHPLBJKB_01423 0.89 -0.8
1,471,335 + OHPLBJKB_01423 0.90 +0.3
1,471,404 + +1.3
1,471,405 - +0.1
1,471,454 + -0.3
1,471,551 - -1.0
1,471,759 + OHPLBJKB_01424 0.15 +1.1
1,471,760 - OHPLBJKB_01424 0.15 -0.7
1,472,024 - OHPLBJKB_01424 0.42 -0.7
1,472,024 - OHPLBJKB_01424 0.42 -1.5
1,472,204 - OHPLBJKB_01424 0.60 +0.1
1,472,336 + OHPLBJKB_01424 0.74 +0.5
1,472,336 + OHPLBJKB_01424 0.74 +0.7
1,472,336 + OHPLBJKB_01424 0.74 +0.3
1,472,337 - OHPLBJKB_01424 0.74 +0.3
1,472,337 - OHPLBJKB_01424 0.74 -0.3
1,472,337 - OHPLBJKB_01424 0.74 -0.0

Or see this region's nucleotide sequence